Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1584 Cannabis sativa HOM05D005943 ORTHO05D007328 1.4e-99 366.3 182 100.0
Cpa.g.sc48.107 Carica papaya HOM05D005943 ORTHO05D007328 1.5e-95 352.8 182 95.1
Ciclev10002634m.g Citrus clementina HOM05D005943 ORTHO05D007328 1.1e-93 346.7 182 93.4
TWI56G0702 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.1e-93 346.7 182 93.4
CsaV3_1G038680 Cucumis sativus L. HOM05D005943 ORTHO05D007328 1.9e-93 345.9 182 93.4
Dinv40356 Davidia involucrata HOM05D005943 ORTHO05D007328 1.9e-93 345.9 182 92.9
Eucgr.L02935 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.5e-93 345.5 177 94.9
HanXRQChr11g0339821 Helianthus annuus HOM05D005943 ORTHO05D007328 3.2e-93 345.1 182 94.0
AUR62005222 Chenopodium quinoa HOM05D005943 ORTHO05D007328 4.2e-93 344.7 178 94.4
Ca_16733_v3 Cicer arietinum L. HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 92.3
ECA236G0332 Erigeron canadensis HOM05D005943 ORTHO05D007328 4.2e-93 344.7 182 93.4
CiPaw.07G023200 Carya illinoinensis HOM05D005943 ORTHO05D007328 5.5e-93 344.4 182 92.9
Psat3g152320 Pisum sativum HOM05D005943 ORTHO05D007328 5.5e-93 344.4 182 92.3
Duzib177G0451 Durio zibethinus HOM05D005943 ORTHO05D007328 7.2e-93 344.0 182 92.9
CSS0008719 Camellia sinensis var. sinensis HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.3
Dinv30834 Davidia involucrata HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 92.3
GSVIVG01031169001 Vitis vinifera HOM05D005943 ORTHO05D007328 9.4e-93 343.6 182 91.8
Glyma.06G132000 Glycine max HOM05D005943 ORTHO05D007328 1.2e-92 343.2 178 93.3
Phvul.009G047900 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 91.8
RcHm_v2.0_Chr3g0456101 Rosa chinensis HOM05D005943 ORTHO05D007328 1.2e-92 343.2 182 92.9
TPR.G33656 Trifolium pratense HOM05D005943 ORTHO05D007328 1.2e-92 343.2 181 91.7
Lj1g0013041 Lotus japonicus HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.3
PSO170G5805 Papaver somniferum HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.9
PSO407G0008 Papaver somniferum HOM05D005943 ORTHO05D007328 1.6e-92 342.8 182 92.9
Gohir.A11G269200 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.7e-92 342.0 178 93.8
Gohir.D11G279400 Gossypium hirsutum HOM05D005943 ORTHO05D007328 2.7e-92 342.0 178 93.8
Potri.005G023600 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 91.8
Potri.013G013700 Populus trichocarpa HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 91.8
PGR031G0471 Punica granatum HOM05D005943 ORTHO05D007328 2.7e-92 342.0 178 93.8
Thecc.05G315300 Theobroma cacao HOM05D005943 ORTHO05D007328 2.7e-92 342.0 182 91.8
Glyma.04G232900 Glycine max HOM05D005943 ORTHO05D007328 3.6e-92 341.7 178 93.3
Solyc01g099890.3 Solanum lycopersicum HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 92.9
Sopen01g043410 Solanum pennellii HOM05D005943 ORTHO05D007328 4.7e-92 341.3 182 92.9
Gorai.007G301600 Gossypium raimondii HOM05D005943 ORTHO05D007328 6.1e-92 340.9 178 93.3
Aqoxy5G00777 Aquilegia oxysepala HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 91.2
Manes.08G116100 Manihot esculenta HOM05D005943 ORTHO05D007328 1.0e-91 340.1 182 91.2
Medtr3g091920 Medicago truncatula HOM05D005943 ORTHO05D007328 1.8e-91 339.3 179 92.2
Lalb_Chr11g0067091 Lupinus albus HOM05D005943 ORTHO05D007328 2.3e-91 339.0 182 89.6
Sed0012379 Sechium edule HOM05D005943 ORTHO05D007328 2.3e-91 339.0 178 93.3
COL.COLO4_10548 Corchorus olitorius HOM05D005943 ORTHO05D007328 3.0e-91 338.6 179 92.7
Lalb_Chr23g0271691 Lupinus albus HOM05D005943 ORTHO05D007328 3.9e-91 338.2 178 91.6
QL03p019642 Quercus lobata HOM05D005943 ORTHO05D007328 3.9e-91 338.2 181 91.2
Haze_04120 Corylus avellana HOM05D005943 ORTHO05D007328 6.7e-91 337.4 178 92.7
Sed0027178 Sechium edule HOM05D005943 ORTHO05D007328 8.8e-91 337.0 182 90.7
unitig_0.g32 Utricularia gibba HOM05D005943 ORTHO05D007328 8.8e-91 337.0 178 91.0
MSTRG.4510 Avicennia marina HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 90.1
Migut.E01764 Erythranthe guttata HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 90.1
MD12G1211900 Malus domestica HOM05D005943 ORTHO05D007328 1.5e-90 336.3 182 89.6
MD04G1198400 Malus domestica HOM05D005943 ORTHO05D007328 2.6e-90 335.5 182 89.0
Prupe.6G319400 Prunus persica HOM05D005943 ORTHO05D007328 3.3e-90 335.1 182 90.1
Cc02_g34350 Coffea canephora HOM05D005943 ORTHO05D007328 5.7e-90 334.3 182 88.5
Nn3g21529 Nelumbo nucifera HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 87.4
Os01g0314300 Oryza sativa ssp. japonica HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 89.6
PGSC0003DMG400024722 Solanum tuberosum HOM05D005943 ORTHO05D007328 9.7e-90 333.6 182 90.7
Lsat_1_v5_gn_7_72860 Lactuca sativa HOM05D005943 ORTHO05D007328 1.3e-89 333.2 179 90.5
HPP92_018258 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.3e-89 333.2 182 87.9
ATR0796G119 Amborella trichopoda HOM05D005943 ORTHO05D007328 1.7e-89 332.8 176 92.0
MELO3C015293.2 Cucumis melo HOM05D001727 ORTHO05D001758 1.7e-89 332.8 173 93.6
Nn4g25770 Nelumbo nucifera HOM05D005943 ORTHO05D007328 3.7e-89 331.6 176 90.9
Sc06g0003910 Simmondsia chinensis HOM05D005943 ORTHO05D007328 3.7e-89 331.6 182 88.5
CDE02G2801 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 8.2e-89 330.5 182 87.4
Duzib128G1848 Durio zibethinus HOM05D005943 ORTHO05D007328 1.4e-88 329.7 176 92.6
Sabra13G0012200 Salix brachista HOM05D001727 ORTHO05D007328 1.4e-88 329.7 176 90.9
Hund07108 Selenicereus undatus HOM05D005943 ORTHO05D007328 1.8e-88 329.3 178 90.4
TWI12G0949 Tripterygium wilfordii HOM05D005943 ORTHO05D007328 1.8e-88 329.3 172 94.8
Atru.chr2.102 Acer truncatum HOM05D001727 ORTHO05D001758 5.3e-88 327.8 172 93.0
DCAR_022176 Daucus carota HOM05D005943 ORTHO05D007328 9.1e-88 327.0 190 85.8
Rhsim05G0137500 Rhododendron simsii HOM05D005943 ORTHO05D007328 2.6e-87 325.5 202 81.2
Mapoly0028s0141 Marchantia polymorpha HOM05D005943 ORTHO05D007328 3.5e-87 325.1 182 86.3
Sabra05G0029200 Salix brachista HOM05D001727 ORTHO05D050481 3.5e-87 325.1 173 91.3
AagrBONN_evm.TU.Sc2ySwM_228.5507 Anthoceros agrestis HOM05D005943 ORTHO05D007328 7.7e-87 323.9 182 86.8
Thhalv10008886m.g Eutrema salsugineum HOM05D005943 ORTHO05D007328 2.2e-86 322.4 182 87.4
SGA_v2.0_scaffold42G16032 Striga asiatica HOM05D005943 ORTHO05D007328 2.2e-86 322.4 199 81.4
Sp1g07730 Schrenkiella parvula HOM05D005943 ORTHO05D007328 3.8e-86 321.6 182 86.8
THA.LOC104805894 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 3.8e-86 321.6 182 85.2
CARHR009020 Cardamine hirsuta HOM05D005943 ORTHO05D007328 8.5e-86 320.5 182 86.3
BcaC05g24766 Brassica carinata HOM05D005943 ORTHO05D007328 1.1e-85 320.1 182 86.8
Pp3c25_690 Physcomitrium patens HOM05D005943 ORTHO05D007328 3.2e-85 318.5 182 84.1
Oeu048875.1 Olea europaea HOM05D005943 ORTHO05D007328 5.5e-85 317.8 182 86.3
AL1G19590 Arabidopsis lyrata HOM05D005943 ORTHO05D007328 1.2e-84 316.6 182 85.7
EL10Ac4g09897 Beta vulgaris HOM05D005943 ORTHO05D007328 1.2e-84 316.6 182 87.4
AT1G09150 Arabidopsis thaliana HOM05D005943 ORTHO05D007328 1.6e-84 316.2 182 85.2
BraA06t23801Z Brassica rapa HOM05D005943 ORTHO05D007328 2.1e-84 315.8 177 87.6
THA.LOC104820740 Tarenaya hassleriana HOM05D005943 ORTHO05D007328 3.6e-84 315.1 178 87.1
Carub.0001s0844 Capsella rubella HOM05D005943 ORTHO05D007328 6.1e-84 314.3 182 84.6
C08p12460 Brassica napus HOM05D005943 ORTHO05D007328 2.3e-83 312.4 174 87.4
BolC8t48886H Brassica oleracea HOM05D005943 ORTHO05D007328 4.0e-83 311.6 173 87.9
Peaxi162Scf00037g01419 Petunia axillaris HOM05D005943 ORTHO05D007328 4.0e-83 311.6 178 87.1
A08p34800 Brassica napus HOM05D005943 ORTHO05D007328 2.0e-82 309.3 174 86.8
A06p05940 Brassica napus HOM05D005943 ORTHO05D007328 2.6e-82 308.9 174 86.8
C05p07140 Brassica napus HOM05D005943 ORTHO05D007328 2.6e-82 308.9 174 86.8
C08p12470 Brassica napus HOM05D005943 ORTHO05D007328 4.4e-82 308.1 174 86.2
MD04G1083700 Malus domestica HOM05D005943 ORTHO05D007328 4.8e-81 304.7 208 75.0
Nitab4.5_0003113g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 1.0e-78 297.0 182 83.0
VMungo1309G2765 Vigna mungo HOM05D005943 ORTHO05D007328 9.4e-77 290.4 153 89.5
FAN02G3650 Fragaria x ananassa HOM05D005943 ORTHO05D007328 1.2e-76 290.0 182 79.1
AUR62000742 Chenopodium quinoa HOM05D005943 ORTHO05D007328 3.6e-76 288.5 155 91.0
Nitab4.5_0003497g0010 Nicotiana tabacum HOM05D005943 ORTHO05D007328 3.6e-76 288.5 155 91.6
arahy.Tifrunner.gnm1.ann1.KZ6QJ9 Arachis hypogaea HOM05D005943 ORTHO05D007328 4.7e-76 288.1 155 90.3
Lj7A623G46 Lonicera japonica HOM05D005943 ORTHO05D007328 4.7e-76 288.1 151 94.7
BcaC07g38477 Brassica carinata HOM05D005943 ORTHO05D007328 8.0e-76 287.3 183 80.3
FAN09G2521 Fragaria x ananassa HOM05D005943 ORTHO05D007328 4.0e-75 285.0 177 80.2
SMO169G0068 Selaginella moellendorffii HOM05D005943 ORTHO05D007328 4.0e-75 285.0 182 78.0
CDE09G0522 Ceratophyllum demersum HOM05D005943 ORTHO05D007328 1.4e-72 276.6 149 87.2
Aa31sc55G100 Aethionema arabicum HOM05D005943 ORTHO05D007328 6.5e-70 267.7 155 85.2
BraA08t35391Z Brassica rapa HOM05D005943 ORTHO05D007328 8.8e-67 257.3 139 88.5
FvH4_6g06770 Fragaria vesca HOM05D005943 ORTHO05D007328 9.8e-66 253.8 184 74.5
Atru.chr6.2339 Acer truncatum HOM05D005943 ORTHO05D007328 1.7e-65 253.1 181 73.5
vmacro19698 Vaccinium macrocarpon HOM05D005943 ORTHO05D007328 1.0e-62 243.8 128 89.8
Zm00001eb339860 Zea mays HOM05D005943 ORTHO05D007328 2.3e-62 242.7 130 89.2
arahy.Tifrunner.gnm1.ann1.2NZ4WG Arachis hypogaea HOM05D000716 ORTHO05D004822 7.3e-61 237.7 126 88.1
PRCOL_00003880 Prasinoderma coloniale HOM05D005943 ORTHO05D007328 9.8e-58 227.3 180 61.1
Haze_26177 Corylus avellana HOM05D005943 ORTHO05D007328 3.2e-56 222.2 177 58.8
SalBow1G5257 Salvia bowleyana HOM05D005943 ORTHO05D007328 1.2e-55 220.3 181 66.3
MCO12G098 Micromonas commoda HOM05D005943 ORTHO05D007328 8.6e-54 214.2 184 58.2
Phvul.009G047833 Phaseolus vulgaris HOM05D005943 ORTHO05D007328 4.4e-50 201.8 105 92.4
Eucgr.H03253 Eucalyptus grandis HOM05D005943 ORTHO05D007328 7.5e-50 201.1 105 91.4
MBI18_g25341_MAGBIO Magnolia biondii HOM05D005943 ORTHO05D007328 1.9e-48 196.4 105 90.5
TAR362G1289 Trochodendron aralioides HOM05D005943 ORTHO05D007328 5.4e-48 194.9 105 89.5
SEGI_36457 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 1.7e-46 189.9 101 88.1
Duzib106G1343 Durio zibethinus HOM05D005943 ORTHO05D007328 9.5e-45 184.1 179 59.8
HPP92_018260 Vanilla planifolia HOM05D005943 ORTHO05D007328 1.5e-42 176.8 100 85.0
TAR633G1587 Trochodendron aralioides HOM05D005943 ORTHO05D007328 9.8e-42 174.1 154 62.3
Eucgr.H03249 Eucalyptus grandis HOM05D005943 ORTHO05D007328 9.2e-40 167.5 86 91.9
Eucgr.H03239 Eucalyptus grandis HOM05D005943 ORTHO05D007328 1.6e-39 166.8 92 88.0
BcaC07g38474 Brassica carinata HOM05D005943 ORTHO05D007328 2.1e-39 166.4 88 89.8
CBR_g36436 Chara braunii HOM05D005943 ORTHO05D007328 1.2e-36 157.1 91 76.9
Cre50.g761397 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.4e-34 149.1 127 59.1
CBR_g20980 Chara braunii HOM05D005943 ORTHO05D007328 9.2e-32 141.0 87 78.2
Eucgr.H03245 Eucalyptus grandis HOM05D005943 ORTHO05D007328 3.0e-30 136.0 92 76.1
ClCG03G017220 Citrullus lanatus HOM05D001727 ORTHO05D001758 8.1e-28 127.9 66 89.4
EL10Ac5g11162 Beta vulgaris HOM05D005943 ORTHO05D007328 2.6e-26 122.9 77 81.8
Eucgr.H03250 Eucalyptus grandis HOM05D005943 ORTHO05D007328 2.2e-25 119.8 70 85.7
Nn1g03974 Nelumbo nucifera HOM05D005943 ORTHO05D007328 7.6e-18 94.7 48 89.6
SEGI_40081 Sequoiadendron giganteum HOM05D005943 ORTHO05D007328 5.6e-13 78.6 49 75.5
Phvul.011G215800 Phaseolus vulgaris HOM05D005117 ORTHO05D005956 2.1e-12 76.6 182 30.8
Cre03.g168605 Chlamydomonas reinhardtii HOM05D005943 ORTHO05D007328 3.6e-12 75.9 58 62.1
VMungo1127G0019 Vigna mungo HOM05D005117 ORTHO05D005956 1.1e-11 74.3 182 29.7
TWI12G0486 Tripterygium wilfordii HOM05D005117 ORTHO05D005956 2.4e-11 73.2 182 28.6
SMO364G0365 Selaginella moellendorffii HOM05D005117 ORTHO05D005956 5.3e-11 72.0 182 29.7
Ciclev10019359m.g Citrus clementina HOM05D005117 ORTHO05D005956 9.0e-11 71.2 181 28.2
MSTRG.25503 Avicennia marina HOM05D005117 ORTHO05D005956 1.2e-10 70.9 182 28.6
Manes.18G111600 Manihot esculenta HOM05D005117 ORTHO05D005956 1.5e-10 70.5 182 26.9
CBR_g6708 Chara braunii HOM05D005117 ORTHO05D005956 2.9e-09 66.2 180 31.1
Glyma.09G001900 Glycine max HOM05D005117 ORTHO05D005956 4.2e-08 62.4 137 30.7
Lj9A696G55 Lonicera japonica HOM05D005117 ORTHO05D005956 4.2e-08 62.4 198 24.2


User provided reference genes

Program Settings