Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1570 Cannabis sativa HOM05D000876 ORTHO05D000285 3.8e-114 414.8 210 100.0
CANSAT35G0018 Cannabis sativa HOM05D000876 ORTHO05D000285 3.9e-82 308.5 163 95.7
CANSAT56G2973 Cannabis sativa HOM05D000876 ORTHO05D000285 1.8e-79 299.7 174 87.4
CANSAT78G1247 Cannabis sativa HOM05D000876 ORTHO05D000285 1.3e-77 293.5 174 86.2
CANSAT01G0041 Cannabis sativa HOM05D000876 ORTHO05D000285 1.9e-76 289.7 174 84.5
CANSAT54G1231 Cannabis sativa HOM05D000876 ORTHO05D000285 1.9e-73 279.6 174 82.8
CANSAT64G0872 Cannabis sativa HOM05D000876 ORTHO05D000285 1.4e-52 210.3 138 82.6
Atru.chr11.998 Acer truncatum HOM05D000876 ORTHO05D000285 4.2e-52 208.8 169 63.3
Atru.chr2.2393 Acer truncatum HOM05D000034 ORTHO05D000037 2.7e-51 206.1 192 55.7
Atru.chr5.3371 Acer truncatum HOM05D000876 ORTHO05D000285 7.9e-35 151.4 136 58.1
Atru.chr2.1367 Acer truncatum HOM05D000876 ORTHO05D000285 6.2e-32 141.7 114 60.5
CANSAT78G1001 Cannabis sativa HOM05D000876 ORTHO05D000285 1.0e-29 134.4 84 81.0
Atru.chr10.1596 Acer truncatum HOM05D000034 ORTHO05D000037 1.1e-20 104.4 117 50.4
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 6.3e-16 88.6 175 36.6
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 1.2e-14 84.3 181 32.0
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 2.0e-14 83.6 179 32.4
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 3.4e-14 82.8 183 32.2
Prupe.5G207000 Prunus persica HOM05D000876 ORTHO05D000285 3.4e-14 82.8 183 32.2
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 5.9e-14 82.0 180 31.7
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 5.9e-14 82.0 180 31.7
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 1.0e-13 81.3 179 33.0
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 3.8e-13 79.3 179 31.8
QL08p029247 Quercus lobata HOM05D013302 ORTHO05D015047 3.8e-13 79.3 177 31.1
Actinidia38818 Actinidia chinensis HOM05D000876 ORTHO05D000285 5.0e-13 79.0 204 26.5
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 5.0e-13 79.0 172 32.6
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 1.1e-12 77.8 179 33.5
Ciclev10027235m.g Citrus clementina HOM05D000876 ORTHO05D000285 4.2e-12 75.9 112 42.9
RcHm_v2.0_Chr2g0128681 Rosa chinensis HOM05D000876 ORTHO05D000285 5.5e-12 75.5 165 31.5
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 7.2e-12 75.1 179 32.4
arahy.Tifrunner.gnm1.ann1.D3784E Arachis hypogaea HOM05D000034 ORTHO05D000037 1.2e-11 74.3 167 31.7
CANSAT64G2926 Cannabis sativa HOM05D000034 ORTHO05D000037 1.6e-11 73.9 44 77.3
FAN02G2707 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.0e-10 71.2 164 32.3
FAN09G4256 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.0e-10 71.2 164 32.3
FAN17G0428 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.0e-10 71.2 164 32.3
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.8e-10 70.5 164 31.7
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 1.8e-10 70.5 176 34.1
Lj2g0008174 Lotus japonicus HOM05D000876 ORTHO05D000285 1.8e-10 70.5 191 26.7
CANSAT01G2537 Cannabis sativa HOM05D000034 ORTHO05D000037 2.3e-10 70.1 39 87.2
CANSAT01G2719 Cannabis sativa HOM05D000034 ORTHO05D000037 2.3e-10 70.1 39 87.2
CANSAT78G0685 Cannabis sativa HOM05D000034 ORTHO05D000037 2.3e-10 70.1 39 87.2
CANSAT78G1769 Cannabis sativa HOM05D000034 ORTHO05D000037 2.3e-10 70.1 39 87.2
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 2.3e-10 70.1 164 31.7
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 2.3e-10 70.1 164 31.7
FAN02G3048 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.3e-10 70.1 164 32.3
Actinidia36308 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.0e-10 69.7 186 26.9
FAN23G0201 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.0e-10 69.7 162 30.9
FAN23G2351 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.0e-10 69.7 162 30.9
Atru.chr4.1880 Acer truncatum HOM05D000876 ORTHO05D000285 3.9e-10 69.3 59 59.3
Actinidia04386 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.9e-10 69.3 186 26.9
Actinidia07377 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.9e-10 69.3 186 26.9
Actinidia15148 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.9e-10 69.3 186 26.9
FAN07G1275 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.9e-10 69.3 164 31.7
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 3.9e-10 69.3 185 28.1
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 6.7e-10 68.6 176 31.2
FvH4_7g12221 Fragaria vesca HOM05D000876 ORTHO05D000285 6.7e-10 68.6 164 31.1
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 1.1e-09 67.8 200 29.0
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 1.1e-09 67.8 200 29.0
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.5e-09 67.4 163 32.5
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 1.5e-09 67.4 185 27.6
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 1.5e-09 67.4 185 27.6
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 2.0e-09 67.0 208 26.4
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 2.6e-09 66.6 218 26.1
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 3.3e-09 66.2 163 31.9
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.3e-09 66.2 181 29.8
Ciclev10013387m.g Citrus clementina HOM05D000876 ORTHO05D034797 4.4e-09 65.9 185 31.4
Gorai.011G116300 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.7e-09 65.5 177 30.5
FAN05G0722 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.4e-09 65.1 175 29.7
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 7.4e-09 65.1 171 33.3
Hund23719 Selenicereus undatus HOM05D000876 ORTHO05D000285 9.7e-09 64.7 215 25.1
CiPaw.10G065300 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.3e-08 64.3 174 29.3
CiPaw.15G017800 Carya illinoinensis HOM05D000876 ORTHO05D000285 1.3e-08 64.3 174 28.2
FAN09G1076 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-08 63.9 157 31.8
Glyma.18G110601 Glycine max HOM05D000876 ORTHO05D000285 2.2e-08 63.5 176 33.0
Gorai.012G070700 Gossypium raimondii HOM05D000876 ORTHO05D000285 2.8e-08 63.2 187 28.9
PSO507G0009 Papaver somniferum HOM05D000876 ORTHO05D000285 2.8e-08 63.2 167 25.7
CANSAT80G1843 Cannabis sativa HOM05D000034 ORTHO05D000037 3.7e-08 62.8 39 79.5
Ciclev10023896m.g Citrus clementina HOM05D000876 ORTHO05D000285 3.7e-08 62.8 67 50.7
Lj1g0007225 Lotus japonicus HOM05D000034 ORTHO05D000037 4.8e-08 62.4 158 27.2
Lj2g0028060 Lotus japonicus HOM05D000034 ORTHO05D000037 4.8e-08 62.4 158 27.2
Gorai.004G102900 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.2e-08 61.6 186 28.5
Gorai.007G190400 Gossypium raimondii HOM05D000876 ORTHO05D000285 8.2e-08 61.6 192 28.6
Gorai.010G149000 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.1e-07 61.2 186 29.0
Gorai.N004200 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.1e-07 61.2 175 27.4
FAN05G3178 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.8e-07 60.5 176 28.4
Gorai.002G171500 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.8e-07 60.5 178 29.8
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 1.8e-07 60.5 185 26.5
RcHm_v2.0_Chr6g0254701 Rosa chinensis HOM05D000876 ORTHO05D000285 1.8e-07 60.5 159 25.2
CiPaw.04G117800 Carya illinoinensis HOM05D000876 ORTHO05D000285 2.4e-07 60.1 186 28.0
Medtr2g435870 Medicago truncatula HOM05D000876 ORTHO05D000285 2.4e-07 60.1 185 29.7
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 2.4e-07 60.1 189 25.9
Ah.01g014380 Amaranthus hybridus HOM05D000876 ORTHO05D002662 3.1e-07 59.7 193 25.9
Gorai.001G159400 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.1e-07 59.7 197 26.9
Gorai.006G019900 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.1e-07 59.3 187 27.8
QL07p002445 Quercus lobata HOM05D000876 ORTHO05D000285 4.1e-07 59.3 166 29.5
Sed0005915 Sechium edule HOM05D000876 ORTHO05D000285 4.1e-07 59.3 170 31.8
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 5.3e-07 58.9 197 28.9
FAN08G3019 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.3e-07 58.9 173 30.1
Gorai.007G232100 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.3e-07 58.9 171 27.5
RcHm_v2.0_Chr2g0103961 Rosa chinensis HOM05D000876 ORTHO05D000285 5.3e-07 58.9 159 25.2
Hma1.2p1_2073F.1_g313200 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 7.0e-07 58.5 127 35.4
Hund14971 Selenicereus undatus HOM05D000876 ORTHO05D000285 9.1e-07 58.2 206 23.8
Gorai.002G171600 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.2e-06 57.8 189 28.6
Gorai.006G056900 Gossypium raimondii HOM05D000876 ORTHO05D000285 1.2e-06 57.8 197 28.4
CSS0024396 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 2.0e-06 57.0 161 31.7
Atru.chr5.1610 Acer truncatum HOM05D000034 ORTHO05D000037 2.6e-06 56.6 161 28.6
arahy.Tifrunner.gnm1.ann1.T11VTH Arachis hypogaea HOM05D000034 ORTHO05D000037 2.6e-06 56.6 184 28.8
Actinidia40454 Actinidia chinensis HOM05D000876 ORTHO05D000285 3.5e-06 56.2 96 28.1
Gorai.005G210400 Gossypium raimondii HOM05D000876 ORTHO05D000285 3.5e-06 56.2 171 28.7
Hma1.2p1_1035F.1_g250490 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 3.5e-06 56.2 38 60.5
SGA_v2.0_scaffold136G35048 Striga asiatica HOM05D045704 ORTHO05D000285 3.5e-06 56.2 184 24.5
FAN02G2262 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.5e-06 55.8 165 26.7
Gorai.012G109800 Gossypium raimondii HOM05D000876 ORTHO05D000285 4.5e-06 55.8 201 26.4
arahy.Tifrunner.gnm1.ann1.01IP25 Arachis hypogaea HOM05D000034 ORTHO05D000037 5.9e-06 55.5 178 29.8
Gorai.009G359600 Gossypium raimondii HOM05D000876 ORTHO05D000285 5.9e-06 55.5 191 26.7
FAN15G0148 Fragaria x ananassa HOM05D000876 ORTHO05D000285 7.7e-06 55.1 193 25.9
Gorai.013G094800 Gossypium raimondii HOM05D000876 ORTHO05D000285 7.7e-06 55.1 201 26.9
Hma1.2p1_0148F.1_g066070 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 7.7e-06 55.1 163 26.4
Hma1.2p1_0148F.1_g066080 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 7.7e-06 55.1 163 26.4


User provided reference genes

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