Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 3.5e-53 211.5 115 100.0
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.2e-45 186.4 115 88.7
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 9.0e-41 170.2 112 84.8
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 4.8e-34 147.9 112 67.0
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 1.4e-33 146.4 112 67.9
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 3.1e-33 145.2 112 68.8
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 4.0e-33 144.8 112 69.6
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.3e-33 144.4 112 66.1
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 5.3e-33 144.4 112 67.9
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 5.3e-33 144.4 112 66.1
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.2e-32 143.3 112 67.0
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 1.2e-32 143.3 112 67.0
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.2e-32 143.3 112 66.1
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 4.5e-32 141.4 112 66.1
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 5.8e-32 141.0 112 67.0
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 7.6e-32 140.6 111 64.9
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 1.3e-31 139.8 111 65.8
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-31 139.4 112 63.4
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 2.9e-31 138.7 112 65.2
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 3.8e-31 138.3 112 65.2
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.9e-31 137.9 112 64.3
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.9e-31 137.9 111 64.9
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 6.5e-31 137.5 112 64.3
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 6.5e-31 137.5 111 64.0
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.4e-31 137.1 112 63.4
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 1.4e-30 136.3 111 64.9
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.4e-30 136.3 112 63.4
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.4e-30 136.3 111 64.0
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.4e-30 136.3 112 63.4
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-30 136.0 112 63.4
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.9e-30 136.0 112 63.4
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 2.5e-30 135.6 112 63.4
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 3.2e-30 135.2 112 63.4
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.5e-30 134.4 112 62.5
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 7.1e-30 134.0 112 63.4
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 9.3e-30 133.7 114 65.8
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 1.2e-29 133.3 112 62.5
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.6e-29 132.9 110 62.7
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.7e-29 132.1 112 61.6
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 1.0e-28 130.2 112 63.4
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.3e-28 129.8 112 62.5
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 1.8e-28 129.4 112 62.5
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.0e-28 128.6 112 62.5
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 3.9e-28 128.3 112 61.6
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 3.9e-28 128.3 111 63.1
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 8.7e-28 127.1 112 60.7
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 8.7e-28 127.1 112 61.6
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 8.7e-28 127.1 112 59.8
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 1.5e-27 126.3 112 58.9
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.5e-27 126.3 114 62.3
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 1.9e-27 125.9 112 61.6
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 5.7e-27 124.4 112 59.8
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 5.7e-27 124.4 112 59.8
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 1.3e-26 123.2 112 60.7
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.6e-26 122.9 112 62.5
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.6e-26 122.9 112 58.9
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.8e-26 122.1 112 58.0
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 3.7e-26 121.7 112 56.2
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.7e-26 121.7 112 58.9
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.8e-26 121.3 112 55.4
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 6.3e-26 120.9 112 58.9
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 8.2e-26 120.6 112 60.7
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 1.1e-25 120.2 112 60.7
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 1.8e-25 119.4 111 59.5
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 1.8e-25 119.4 112 59.8
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.4e-25 119.0 112 56.2
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 2.4e-25 119.0 112 56.2
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 3.1e-25 118.6 112 56.2
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 4.1e-25 118.2 112 55.4
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 4.1e-25 118.2 111 56.8
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 4.1e-25 118.2 112 59.8
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 6.9e-25 117.5 112 56.2
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 9.0e-25 117.1 112 59.8
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 9.0e-25 117.1 112 57.1
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.5e-24 116.3 112 55.4
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.0e-24 115.9 112 57.1
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.0e-24 115.9 112 60.7
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 7.6e-24 114.0 112 58.0
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.7e-23 112.8 112 58.9
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 3.8e-23 111.7 116 56.9
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.5e-22 107.8 112 56.2
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.5e-21 105.1 112 51.8
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 3.0e-20 102.1 112 54.5
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 3.9e-20 101.7 105 52.4
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 8.7e-20 100.5 112 51.8
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 8.7e-20 100.5 112 51.8
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 8.7e-20 100.5 112 52.7
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.1e-19 100.1 112 51.8
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 1.1e-19 100.1 112 51.8
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 1.1e-19 100.1 112 51.8
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 1.1e-19 100.1 112 51.8
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.1e-19 100.1 112 53.6
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 1.5e-19 99.8 109 46.8
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 2.5e-19 99.0 112 50.9
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 3.3e-19 98.6 112 51.8
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 7.4e-19 97.4 112 49.1
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.3e-18 96.7 112 51.8
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 6.3e-18 94.4 112 47.3
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 6.3e-18 94.4 112 47.3
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.1e-17 93.6 84 58.3
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.4e-17 93.2 84 58.3
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.8e-17 92.8 105 48.6
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 2.4e-17 92.4 112 46.4
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 3.1e-17 92.0 112 50.9
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 3.1e-17 92.0 83 56.6
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-17 91.7 83 57.8
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-17 91.7 83 57.8
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 4.1e-17 91.7 83 57.8
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.1e-17 91.7 79 58.2
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 4.1e-17 91.7 112 52.7
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 9.0e-17 90.5 112 47.3
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.5e-16 89.7 112 49.1
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 2.6e-16 89.0 83 56.6
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.6e-16 89.0 112 46.4
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 3.4e-16 88.6 105 45.7
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 4.5e-16 88.2 112 46.4
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 3.8e-15 85.1 86 55.8
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.0e-15 84.7 103 47.6
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.2e-14 82.0 103 47.6
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.0e-12 75.5 112 45.5
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 6.7e-12 74.3 62 64.5
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 3.3e-11 72.0 82 50.0
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 4.5e-08 61.6 59 50.8
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 4.5e-08 61.6 77 44.2
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.7e-07 59.7 93 49.5
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.7e-07 59.7 93 49.5


User provided reference genes

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