Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 1.4e-116 422.9 208 100.0
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 2.4e-20 103.2 173 44.5
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.6e-19 100.5 173 42.8
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 2.3e-18 96.7 171 41.5
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 6.6e-18 95.1 186 40.3
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 8.7e-18 94.7 158 39.9
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.9e-17 93.6 167 36.5
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 3.3e-17 92.8 170 38.2
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 3.3e-17 92.8 185 40.0
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 4.3e-17 92.4 159 38.4
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 4.3e-17 92.4 145 42.8
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 5.6e-17 92.0 158 39.9
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 9.6e-17 91.3 175 38.3
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.3e-16 90.9 175 38.3
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 1.6e-16 90.5 143 43.4
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 6.2e-16 88.6 165 38.2
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 3.1e-15 86.3 180 34.4
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 3.1e-15 86.3 184 38.6
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 9.0e-15 84.7 179 36.9
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 4.5e-14 82.4 147 39.5
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 7.6e-14 81.6 154 40.3
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 7.6e-14 81.6 169 37.3
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 9.9e-14 81.3 159 37.1
Sabra17G0109400 Salix brachista HOM05D008015 ORTHO05D009180 9.9e-14 81.3 173 37.6
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 9.9e-14 81.3 157 42.0
Actinidia28799 Actinidia chinensis HOM05D008015 ORTHO05D009180 1.3e-13 80.9 171 35.7
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 1.3e-13 80.9 180 35.6
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 1.3e-13 80.9 181 35.4
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 2.9e-13 79.7 196 33.7
Phvul.008G237600 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 3.8e-13 79.3 127 45.7
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 6.4e-13 78.6 165 34.5
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 8.4e-13 78.2 145 39.3
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 8.4e-13 78.2 152 34.2
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.1e-12 77.8 174 36.8
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 1.1e-12 77.8 174 36.8
ATR0753G067 Amborella trichopoda HOM05D008015 ORTHO05D009180 3.2e-12 76.3 164 32.9
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 3.2e-12 76.3 160 35.0
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 3.2e-12 76.3 175 35.4
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 5.4e-12 75.5 140 35.7
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 7.1e-12 75.1 143 38.5
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 9.3e-12 74.7 171 38.6
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 9.3e-12 74.7 102 47.1
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 9.3e-12 74.7 136 37.5
Eucgr.F02874 Eucalyptus grandis HOM05D008015 ORTHO05D009180 1.2e-11 74.3 186 34.9
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 1.6e-11 73.9 119 44.5
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 2.7e-11 73.2 100 46.0
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 1.0e-10 71.2 153 34.0
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 1.0e-10 71.2 223 29.6
TWI74G1025 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.8e-10 70.5 161 35.4
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 3.0e-10 69.7 180 33.9
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 3.9e-10 69.3 124 34.7
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 3.9e-10 69.3 122 40.2
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 5.1e-10 68.9 165 35.8
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 6.7e-10 68.6 183 31.1
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 6.7e-10 68.6 189 31.7
Actinidia17202 Actinidia chinensis HOM05D008015 ORTHO05D009180 8.7e-10 68.2 154 33.8
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 1.1e-09 67.8 145 38.6
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 1.1e-09 67.8 100 41.0
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 1.5e-09 67.4 161 31.1
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.5e-09 67.4 167 33.5
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 1.5e-09 67.4 167 33.5
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 1.9e-09 67.0 170 34.1
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 1.9e-09 67.0 155 32.9
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 3.3e-09 66.2 198 29.8
FAN26G1918 Fragaria x ananassa HOM05D008015 ORTHO05D009180 4.3e-09 65.9 124 35.5
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 5.6e-09 65.5 154 37.0
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 5.6e-09 65.5 154 37.0
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 7.4e-09 65.1 175 30.3
SGA_v2.0_scaffold45G17152 Striga asiatica HOM05D008015 ORTHO05D009180 7.4e-09 65.1 154 30.5
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 9.6e-09 64.7 174 35.6
VMungo1383G2632 Vigna mungo HOM05D008015 ORTHO05D009180 9.6e-09 64.7 124 39.5
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.6e-08 63.9 145 36.6
Phvul.001G229400 Phaseolus vulgaris HOM05D008015 ORTHO05D009180 2.8e-08 63.2 122 38.5
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 4.8e-08 62.4 137 31.4
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 4.8e-08 62.4 137 31.4
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 4.8e-08 62.4 137 31.4
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 6.2e-08 62.0 117 38.5
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 8.1e-08 61.6 161 32.3
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.1e-07 61.2 168 29.8
unitig_32.g11793 Utricularia gibba HOM05D008015 ORTHO05D009180 1.4e-07 60.8 155 35.5
PGR004G2766 Punica granatum HOM05D009275 ORTHO05D009180 6.9e-07 58.5 82 40.2
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 1.2e-06 57.8 159 30.8
Dinv28182 Davidia involucrata HOM05D008015 ORTHO05D009180 1.2e-06 57.8 151 34.4
Glyma.11G215300 Glycine max HOM05D008015 ORTHO05D009180 1.2e-06 57.8 135 34.8
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 4.5e-06 55.8 152 32.9
MBI13_g24899_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 4.5e-06 55.8 66 45.5
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 9.9e-06 54.7 150 37.3


User provided reference genes

Program Settings