Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1510 Cannabis sativa HOM05D005657 ORTHO05D007104 6.9e-181 637.1 308 100.0
GSVIVG01021513001 Vitis vinifera HOM05D005657 ORTHO05D007104 6.2e-121 438.0 321 67.0
FAN21G3134 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.2e-119 433.7 317 67.8
MD05G1282500 Malus domestica HOM05D005657 ORTHO05D007104 1.5e-119 433.3 315 67.6
Cfa000932 Carpinus fangiana HOM05D005657 ORTHO05D007104 7.6e-119 431.0 326 65.0
FAN16G0196 Fragaria x ananassa HOM05D005657 ORTHO05D007104 7.6e-119 431.0 317 67.5
Hma1.2p1_0020F.1_g014110 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 6.4e-118 427.9 321 66.7
CiPaw.09G122400 Carya illinoinensis HOM05D005657 ORTHO05D007104 3.2e-117 425.6 324 64.8
FvH4_3g05380 Fragaria vesca HOM05D005657 ORTHO05D007104 1.6e-116 423.3 317 66.2
RcHm_v2.0_Chr5g0014371 Rosa chinensis HOM05D005657 ORTHO05D007104 1.6e-116 423.3 316 66.1
Prupe.4G082300 Prunus persica HOM05D005657 ORTHO05D007104 7.8e-116 421.0 317 65.3
Gohir.A05G147800 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.3e-115 419.5 318 65.4
Gohir.D05G150300 Gossypium hirsutum HOM05D005657 ORTHO05D007104 2.3e-115 419.5 318 65.4
Eucgr.E01441 Eucalyptus grandis HOM05D005657 ORTHO05D007104 3.9e-115 418.7 334 65.0
Gorai.009G154400 Gossypium raimondii HOM05D005657 ORTHO05D007104 1.1e-114 417.2 318 65.1
arahy.Tifrunner.gnm1.ann1.1GZ3A6 Arachis hypogaea HOM05D005657 ORTHO05D007104 1.2e-113 413.7 315 63.5
Haze_05617 Corylus avellana HOM05D005657 ORTHO05D007104 1.2e-113 413.7 359 59.3
arahy.Tifrunner.gnm1.ann1.PL5EIV Arachis hypogaea HOM05D005657 ORTHO05D007104 4.7e-113 411.8 315 63.5
CsaV3_6G051800 Cucumis sativus L. HOM05D005657 ORTHO05D007104 8.1e-113 411.0 323 62.5
Actinidia39582 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.4e-112 410.2 318 63.8
SalBow8G0891 Salvia bowleyana HOM05D005657 ORTHO05D007104 1.8e-112 409.8 317 65.6
Ciclev10015992m.g Citrus clementina HOM05D005657 ORTHO05D007104 9.0e-112 407.5 319 64.3
Lj6g0016438 Lotus japonicus HOM05D005657 ORTHO05D007104 9.0e-112 407.5 325 61.5
Ca_00535_v3 Cicer arietinum L. HOM05D005657 ORTHO05D007104 1.2e-111 407.1 324 60.8
AT1G30130 Arabidopsis thaliana HOM05D005657 ORTHO05D007104 1.5e-111 406.8 318 62.9
PGR031G0971 Punica granatum HOM05D005657 ORTHO05D007104 2.0e-111 406.4 320 64.4
Thecc.06G148800 Theobroma cacao HOM05D005657 ORTHO05D007104 2.6e-111 406.0 322 62.7
MSTRG.16252 Avicennia marina HOM05D005657 ORTHO05D007104 4.4e-111 405.2 321 64.5
Psat1g188200 Pisum sativum HOM05D005657 ORTHO05D007104 1.3e-110 403.7 324 62.0
QL05p057428 Quercus lobata HOM05D005657 ORTHO05D007104 1.3e-110 403.7 324 62.0
Duzib192G0691 Durio zibethinus HOM05D005657 ORTHO05D007104 3.8e-110 402.1 338 60.7
MELO3C007126.2 Cucumis melo HOM05D005657 ORTHO05D007104 4.9e-110 401.7 327 62.1
Medtr2g019220 Medicago truncatula HOM05D005657 ORTHO05D007104 4.9e-110 401.7 324 60.8
TAR626G1592 Trochodendron aralioides HOM05D005657 ORTHO05D007104 4.9e-110 401.7 323 62.5
ClCG01G024690 Citrullus lanatus HOM05D005657 ORTHO05D007104 8.4e-110 401.0 319 61.4
TWI53G0207 Tripterygium wilfordii HOM05D005657 ORTHO05D007104 1.1e-109 400.6 317 61.2
Glyma.13G219000 Glycine max HOM05D005657 ORTHO05D007104 1.4e-109 400.2 326 60.7
Cc07_g20130 Coffea canephora HOM05D005657 ORTHO05D007104 1.9e-109 399.8 313 62.3
VMungo0540G0312 Vigna mungo HOM05D005657 ORTHO05D007104 1.9e-109 399.8 323 61.0
Potri.011G084000 Populus trichocarpa HOM05D005657 ORTHO05D007104 3.2e-109 399.1 314 65.3
Oeu042460.1 Olea europaea HOM05D005657 ORTHO05D007104 4.2e-109 398.7 318 62.3
Thhalv10008271m.g Eutrema salsugineum HOM05D005657 ORTHO05D007104 7.1e-109 397.9 318 61.9
Lalb_Chr18g0055371 Lupinus albus HOM05D005657 ORTHO05D007104 9.3e-109 397.5 326 58.9
CARHR029280 Cardamine hirsuta HOM05D005657 ORTHO05D007104 1.2e-108 397.1 319 61.8
A08p24690 Brassica napus HOM05D005657 ORTHO05D007104 3.5e-108 395.6 319 62.1
Sp1g25990 Schrenkiella parvula HOM05D005657 ORTHO05D007104 3.5e-108 395.6 318 61.6
Sed0002032 Sechium edule HOM05D005657 ORTHO05D007104 5.1e-107 391.7 320 61.2
DCAR_007885 Daucus carota HOM05D005657 ORTHO05D007104 6.6e-107 391.3 311 62.7
FAN25G2659 Fragaria x ananassa HOM05D005657 ORTHO05D007104 1.5e-106 390.2 272 70.2
BraA08t34424Z Brassica rapa HOM05D005657 ORTHO05D007104 1.9e-106 389.8 319 61.1
BolC3t19896H Brassica oleracea HOM05D005657 ORTHO05D007104 3.3e-106 389.0 317 61.2
Aa31LG6G5550 Aethionema arabicum HOM05D005657 ORTHO05D007104 5.6e-106 388.3 319 61.8
Carub.0001s2836 Capsella rubella HOM05D005657 ORTHO05D007104 5.6e-106 388.3 317 61.5
BcaC01g00157 Brassica carinata HOM05D005657 ORTHO05D007104 7.3e-106 387.9 320 60.6
C03p76410 Brassica napus HOM05D005657 ORTHO05D007104 2.8e-105 386.0 320 60.0
Nn4g26588 Nelumbo nucifera HOM05D005657 ORTHO05D007104 8.1e-105 384.4 319 59.6
BcaB03g12197 Brassica carinata HOM05D005657 ORTHO05D007104 1.1e-104 384.0 318 60.1
HanXRQChr16g0525711 Helianthus annuus HOM05D005657 ORTHO05D007104 1.2e-103 380.6 311 61.1
Sc24g0001740 Simmondsia chinensis HOM05D005657 ORTHO05D007104 1.5e-103 380.2 311 61.7
Sopen05g032420 Solanum pennellii HOM05D005657 ORTHO05D007104 2.0e-103 379.8 323 61.0
PGSC0003DMG401013075 Solanum tuberosum HOM05D005657 ORTHO05D007104 2.0e-103 379.8 325 60.3
CSS0046586 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 4.5e-103 378.6 308 60.7
Sabra11G0066600 Salix brachista HOM05D005657 ORTHO05D007104 4.5e-103 378.6 314 61.1
TPR.G26242 Trifolium pratense HOM05D005657 ORTHO05D007104 7.6e-103 377.9 278 62.9
CAN.G1744.1 Capsicum annuum HOM05D005657 ORTHO05D007104 9.9e-103 377.5 320 59.7
Solyc05g053950.4 Solanum lycopersicum HOM05D005657 ORTHO05D007104 9.9e-103 377.5 325 60.3
Manes.17G071500 Manihot esculenta HOM05D005657 ORTHO05D007104 1.7e-102 376.7 329 59.9
Ah.09g232540 Amaranthus hybridus HOM05D005657 ORTHO05D007104 2.2e-102 376.3 321 60.7
EL10Ac8g19662 Beta vulgaris HOM05D005657 ORTHO05D007104 1.1e-101 374.0 321 59.5
Nitab4.5_0000484g0050 Nicotiana tabacum HOM05D005657 ORTHO05D007104 1.4e-101 373.6 318 60.1
CSS0036233 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.4e-101 372.9 308 59.7
THA.LOC104812673 Tarenaya hassleriana HOM05D005657 ORTHO05D007104 1.6e-100 370.2 324 58.3
Aqoxy1G01688 Aquilegia oxysepala HOM05D005657 ORTHO05D007104 6.7e-99 364.8 328 55.2
vmacro10957 Vaccinium macrocarpon HOM05D005657 ORTHO05D007104 2.8e-97 359.4 367 52.6
MBI18_g24473_MAGBIO Magnolia biondii HOM05D005657 ORTHO05D007104 4.8e-97 358.6 318 57.9
PSO339G2615 Papaver somniferum HOM05D005657 ORTHO05D007104 1.1e-96 357.5 326 55.8
TPR.G26236 Trifolium pratense HOM05D005657 ORTHO05D007104 1.4e-96 357.1 320 54.7
PSO384G4094 Papaver somniferum HOM05D005657 ORTHO05D007104 2.4e-96 356.3 326 56.1
ECA234G1983 Erigeron canadensis HOM05D005657 ORTHO05D007104 1.2e-95 354.0 312 57.7
Lsat_1_v5_gn_4_29400 Lactuca sativa HOM05D005657 ORTHO05D007104 5.8e-95 351.7 319 57.1
FAN11G2536 Fragaria x ananassa HOM05D005657 ORTHO05D007104 8.4e-94 347.8 317 57.7
AUR62002729 Chenopodium quinoa HOM05D005657 ORTHO05D007104 1.2e-92 344.0 225 71.1
HPP92_012186 Vanilla planifolia HOM05D005657 ORTHO05D007104 1.2e-92 344.0 325 58.2
ATR1098G050 Amborella trichopoda HOM05D005657 ORTHO05D007104 2.1e-92 343.2 333 54.1
Dinv30768 Davidia involucrata HOM05D005657 ORTHO05D007104 1.3e-91 340.5 241 72.2
SEGI_34988 Sequoiadendron giganteum HOM05D005657 ORTHO05D007104 1.3e-91 340.5 330 54.8
Zm00001eb300160 Zea mays HOM05D005657 ORTHO05D007104 5.1e-91 338.6 331 56.2
Phvul.006G165700 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.0e-86 324.3 324 52.5
Peaxi162Scf00394g00119 Petunia axillaris HOM05D005657 ORTHO05D007104 3.8e-86 322.4 255 63.1
Rhsim02G0159200 Rhododendron simsii HOM05D005657 ORTHO05D007104 4.9e-86 322.0 317 54.9
Migut.D01761 Erythranthe guttata HOM05D005657 ORTHO05D007104 3.2e-85 319.3 240 67.9
Nitab4.5_0000717g0030 Nicotiana tabacum HOM05D005657 ORTHO05D007104 2.5e-82 309.7 256 62.9
Hund15862 Selenicereus undatus HOM05D005657 ORTHO05D007104 3.1e-80 302.8 318 52.8
Lj2A319G39 Lonicera japonica HOM05D005657 ORTHO05D007104 2.5e-77 293.1 254 57.9
DCAR_027907 Daucus carota HOM05D005657 ORTHO05D007104 3.6e-76 289.3 306 49.7
DCAR_027906 Daucus carota HOM05D005657 ORTHO05D007104 9.7e-74 281.2 309 48.2
Mapoly0156s0023 Marchantia polymorpha HOM05D005657 ORTHO05D007104 9.7e-74 281.2 317 49.5
Actinidia07705 Actinidia chinensis HOM05D005657 ORTHO05D007104 1.3e-73 280.8 319 49.8
CDE01G0002 Ceratophyllum demersum HOM05D005657 ORTHO05D007104 3.1e-72 276.2 249 58.2
Atru.chr10.1193 Acer truncatum HOM05D005657 ORTHO05D007104 5.3e-72 275.4 213 62.4
Pp3c19_5890 Physcomitrium patens HOM05D005657 ORTHO05D007104 9.1e-72 274.6 321 48.6
SMO364G0117 Selaginella moellendorffii HOM05D005657 ORTHO05D007104 9.1e-72 274.6 315 50.8
DCAR_027905 Daucus carota HOM05D005657 ORTHO05D007104 1.5e-71 273.9 254 53.9
AUR62030180 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.0e-71 273.5 173 71.1
AagrBONN_evm.TU.Sc2ySwM_117.1613 Anthoceros agrestis HOM05D001134 ORTHO05D001035 6.5e-70 268.5 236 55.5
SalBow2G3627 Salvia bowleyana HOM05D005657 ORTHO05D007104 9.4e-69 264.6 321 46.7
BcaB03g12196 Brassica carinata HOM05D005657 ORTHO05D007104 6.5e-62 241.9 174 64.9
Rhsim02G0159300 Rhododendron simsii HOM05D005657 ORTHO05D007104 3.9e-59 232.6 226 50.9
Hma1.2p1_0020F.1_g014100 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 1.5e-58 230.7 176 69.3
Os07g0153300 Oryza sativa ssp. japonica HOM05D005657 ORTHO05D007104 2.6e-58 229.9 237 54.4
SGA_v2.0_scaffold333G48980 Striga asiatica HOM05D005657 ORTHO05D007104 7.5e-50 201.8 128 74.2
Hma1.2p1_0020F.1_g014120 Hydrangea macrophylla HOM05D005657 ORTHO05D007104 9.7e-50 201.4 144 63.2
Glyma.15G093200 Glycine max HOM05D005657 ORTHO05D007104 8.3e-49 198.4 191 57.6
SalBow2G2566 Salvia bowleyana HOM05D005657 ORTHO05D007104 2.7e-47 193.4 321 37.4
AUR62002725 Chenopodium quinoa HOM05D005657 ORTHO05D007104 2.9e-46 189.9 227 44.9
MCO14G385 Micromonas commoda HOM05D005657 ORTHO05D007104 9.1e-40 168.3 234 41.5
PGSC0003DMG400002455 Solanum tuberosum HOM05D005657 ORTHO05D007104 9.1e-40 168.3 145 53.8
CBR_g39195 Chara braunii HOM05D005657 ORTHO05D007104 7.2e-37 158.7 436 28.4
PRCOL_00005919 Prasinoderma coloniale HOM05D005657 ORTHO05D007104 6.1e-36 155.6 253 36.8
Cre06.g269300 Chlamydomonas reinhardtii HOM05D005657 ORTHO05D007104 1.8e-35 154.1 236 39.4
unitig_26.g9756 Utricularia gibba HOM05D005657 ORTHO05D007104 2.6e-34 150.2 147 59.9
TPR.G26247 Trifolium pratense HOM05D005657 ORTHO05D007104 4.7e-28 129.4 116 56.9
SalBow2G0785 Salvia bowleyana HOM05D005657 ORTHO05D007104 4.6e-23 112.8 174 42.5
SGA_v2.0_scaffold37G14914 Striga asiatica HOM05D005657 ORTHO05D007104 3.6e-20 103.2 62 75.8
unitig_26.g9757 Utricularia gibba HOM05D005657 ORTHO05D007104 1.3e-17 94.7 67 59.7
TPR.G7274 Trifolium pratense HOM05D005657 ORTHO05D007104 2.8e-12 77.0 63 55.6
Glyma.08G293333 Glycine max HOM05D005657 ORTHO05D007104 3.6e-12 76.6 52 65.4
Phvul.007G245866 Phaseolus vulgaris HOM05D005657 ORTHO05D007104 1.8e-11 74.3 47 66.0
COL.COLO4_31053 Corchorus olitorius HOM05D005657 ORTHO05D007104 1.2e-10 71.6 56 64.3
Duzib160G0546 Durio zibethinus HOM05D005657 ORTHO05D007104 1.7e-09 67.8 47 59.6
SGA_v2.0_scaffold119G32786 Striga asiatica HOM05D005657 ORTHO05D007104 2.9e-09 67.0 31 93.5
SGA_v2.0_scaffold118G32549 Striga asiatica HOM05D005657 ORTHO05D007104 4.1e-08 63.2 31 90.3
CSS0012720 Camellia sinensis var. sinensis HOM05D005657 ORTHO05D007104 2.7e-07 60.5 38 65.8
MCO01G569 Micromonas commoda HOM05D005657 ORTHO05D007104 5.1e-06 56.2 42 59.5


User provided reference genes

Program Settings