Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 3.4e-124 448.4 229 100.0
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 3.2e-82 308.9 236 72.0
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 4.7e-81 305.1 234 71.4
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 6.1e-81 304.7 236 71.2
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 1.0e-80 303.9 220 73.2
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 1.4e-80 303.5 220 74.1
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.1e-80 301.6 224 68.8
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 6.7e-80 301.2 231 72.3
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 1.5e-79 300.1 223 69.5
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 3.3e-79 298.9 223 69.1
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 4.4e-79 298.5 224 67.4
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 7.4e-79 297.7 229 68.1
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 7.4e-79 297.7 231 71.0
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 9.7e-79 297.4 227 69.2
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 2.8e-78 295.8 229 67.7
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 4.8e-78 295.0 223 71.3
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 8.2e-78 294.3 220 69.1
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 8.2e-78 294.3 221 66.5
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 1.4e-77 293.5 221 65.6
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 1.8e-77 293.1 232 68.1
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.8e-77 293.1 227 72.2
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 1.8e-77 293.1 226 67.3
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 4.1e-77 292.0 221 66.5
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 7.0e-77 291.2 234 67.1
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 7.0e-77 291.2 219 69.4
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 9.1e-77 290.8 219 67.1
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 1.2e-76 290.4 219 72.6
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 1.5e-76 290.0 228 71.1
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 2.0e-76 289.7 209 69.4
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 2.0e-76 289.7 221 65.6
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 4.5e-76 288.5 232 65.1
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 4.5e-76 288.5 233 66.5
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 1.0e-75 287.3 225 67.1
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 1.0e-75 287.3 225 67.1
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 1.3e-75 287.0 220 67.3
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 1.7e-75 286.6 221 67.4
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 2.2e-75 286.2 232 69.4
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 2.9e-75 285.8 185 75.1
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.9e-75 285.8 227 68.7
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.9e-75 285.8 231 62.3
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 2.9e-75 285.8 231 61.9
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.9e-75 285.8 228 65.8
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 3.8e-75 285.4 225 66.7
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 8.5e-75 284.3 228 71.5
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 1.1e-74 283.9 196 75.5
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.1e-74 283.9 183 74.3
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 2.5e-74 282.7 229 66.8
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.5e-74 282.7 230 65.2
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 3.2e-74 282.3 227 69.2
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 3.2e-74 282.3 231 64.5
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 5.5e-74 281.6 224 65.6
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 7.2e-74 281.2 227 63.4
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 2.1e-73 279.6 227 65.6
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 2.1e-73 279.6 227 68.3
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 2.7e-73 279.3 231 68.8
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 3.6e-73 278.9 233 63.5
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 3.6e-73 278.9 231 62.3
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 4.7e-73 278.5 230 67.0
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 4.7e-73 278.5 224 66.5
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 6.1e-73 278.1 224 67.0
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 8.0e-73 277.7 203 69.5
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 1.0e-72 277.3 206 66.5
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.8e-72 276.6 225 68.4
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.8e-72 276.6 231 68.0
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 2.3e-72 276.2 206 66.0
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 3.0e-72 275.8 225 61.3
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 3.9e-72 275.4 203 69.0
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 3.9e-72 275.4 203 69.0
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 6.7e-72 274.6 222 67.6
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 8.8e-72 274.2 231 62.8
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 8.8e-72 274.2 225 68.4
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 1.1e-71 273.9 228 64.0
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 2.0e-71 273.1 227 67.0
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 2.0e-71 273.1 225 68.0
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 2.0e-71 273.1 178 70.8
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 2.6e-71 272.7 235 66.4
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.6e-71 272.7 225 67.6
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 3.3e-71 272.3 225 67.6
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 3.3e-71 272.3 188 75.5
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 4.4e-71 271.9 225 67.6
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 4.4e-71 271.9 204 70.1
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 9.7e-71 270.8 203 69.0
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 9.7e-71 270.8 203 69.0
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 1.7e-70 270.0 229 66.4
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 2.2e-70 269.6 225 67.6
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 2.8e-70 269.2 229 64.2
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 4.8e-70 268.5 232 63.8
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 6.3e-70 268.1 216 66.7
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 8.2e-70 267.7 188 74.5
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 5.3e-69 265.0 204 67.6
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 1.2e-68 263.8 232 65.1
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.6e-68 262.7 219 63.0
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 3.8e-67 258.8 205 67.3
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 5.0e-67 258.5 183 72.7
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 5.0e-67 258.5 207 66.7
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 2.5e-66 256.1 212 64.6
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 3.2e-66 255.8 223 61.9
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 7.2e-66 254.6 184 69.6
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.1e-65 253.1 216 63.0
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 1.3e-62 243.8 218 63.8
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 4.8e-62 241.9 177 71.2
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 2.4e-61 239.6 185 67.0
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 5.3e-61 238.4 186 66.1
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 7.7e-60 234.6 175 69.1
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 3.8e-59 232.3 180 66.7
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.1e-58 230.7 200 64.0
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 2.0e-52 209.9 140 71.4
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 1.0e-48 197.6 134 67.2
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 2.0e-44 183.3 186 52.2
AT3G12370 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 2.3e-43 179.9 141 61.0
AL3G24020 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 6.6e-43 178.3 141 60.3
Thhalv10022434m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 8.6e-43 177.9 141 59.6
C01p52890 Brassica napus HOM05D004659 ORTHO05D005547 1.5e-42 177.2 141 58.9
Carub.0003s1173 Capsella rubella HOM05D004659 ORTHO05D005547 1.9e-42 176.8 139 60.4
Sp3g10560 Schrenkiella parvula HOM05D004659 ORTHO05D005547 2.5e-42 176.4 141 58.9
BolC1t05226H Brassica oleracea HOM05D004659 ORTHO05D005547 4.3e-42 175.6 141 58.2
BcaC05g29267 Brassica carinata HOM05D004659 ORTHO05D005547 9.5e-42 174.5 141 58.2
C05p55460 Brassica napus HOM05D004659 ORTHO05D005547 9.5e-42 174.5 141 58.2
BolC5t34212H Brassica oleracea HOM05D004659 ORTHO05D005547 9.5e-42 174.5 141 58.2
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 9.5e-42 174.5 141 58.9
A05p37030 Brassica napus HOM05D004659 ORTHO05D005547 1.2e-41 174.1 141 58.2
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 1.2e-41 174.1 141 58.2
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.6e-41 173.7 133 60.9
Zm00001eb355270 Zea mays HOM05D004659 ORTHO05D005547 2.1e-41 173.3 184 47.8
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 4.7e-41 172.2 141 57.4
SMO306G0014 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 6.8e-40 168.3 103 80.6
Os05g0121500 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 2.6e-39 166.4 162 50.6
Haze_16952 Corylus avellana HOM05D004659 ORTHO05D005547 2.9e-38 162.9 226 44.7
HPP92_012064 Vanilla planifolia HOM05D004659 ORTHO05D005547 2.3e-35 153.3 159 48.4
A02p02000 Brassica napus HOM05D004659 ORTHO05D005547 1.7e-30 137.1 104 68.3
Rhsim07G0202500 Rhododendron simsii HOM05D004659 ORTHO05D005547 6.0e-28 128.6 131 59.5
Hund23274 Selenicereus undatus HOM05D004659 ORTHO05D005547 1.7e-27 127.1 152 43.4
Sc01g0005590 Simmondsia chinensis HOM05D004659 ORTHO05D005547 2.3e-27 126.7 178 43.8
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 6.6e-27 125.2 102 64.7
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 3.3e-26 122.9 156 41.0
Sc26g0002120 Simmondsia chinensis HOM05D004659 ORTHO05D005547 7.3e-26 121.7 191 40.8
BcaB01g05353 Brassica carinata HOM05D004659 ORTHO05D005547 2.1e-25 120.2 132 53.8
Cfa001576 Carpinus fangiana HOM05D004659 ORTHO05D005547 8.1e-25 118.2 225 40.9
MD17G1117700 Malus domestica HOM05D004659 ORTHO05D005547 2.6e-23 113.2 88 65.9
GSVIVG01032650001 Vitis vinifera HOM05D004659 ORTHO05D005547 9.9e-23 111.3 228 39.5
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 3.2e-21 106.3 186 32.3
Sc01g0009170 Simmondsia chinensis HOM05D004659 ORTHO05D005547 3.2e-21 106.3 201 38.3
EL10Ac6g15306 Beta vulgaris HOM05D004659 ORTHO05D005547 6.6e-19 98.6 195 35.4
Ah.09g233850 Amaranthus hybridus HOM05D004659 ORTHO05D005547 7.3e-18 95.1 200 34.0
Actinidia38237 Actinidia chinensis HOM05D004659 ORTHO05D005547 1.2e-17 94.4 105 55.2
Zm00001eb342870 Zea mays HOM05D004659 ORTHO05D005547 3.6e-17 92.8 72 59.7
Pp3c11_2850 Physcomitrium patens HOM05D004659 ORTHO05D005547 8.1e-17 91.7 68 66.2
MBI05_g35481_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 9.3e-13 78.2 96 45.8
Medtr3g058560 Medicago truncatula HOM05D004659 ORTHO05D005547 1.7e-11 73.9 48 70.8
AUR62043493 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.0e-11 73.2 101 40.6


User provided reference genes

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