Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1449 Cannabis sativa HOM05D005868 ORTHO05D006964 2.5e-137 492.3 275 100.0
CSS0026098 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.9e-93 345.9 273 67.0
COL.COLO4_11936 Corchorus olitorius HOM05D005868 ORTHO05D006964 1.9e-92 343.2 272 71.0
Duzib150G0047 Durio zibethinus HOM05D005868 ORTHO05D006964 4.1e-92 342.0 273 63.4
Thecc.09G124300 Theobroma cacao HOM05D005868 ORTHO05D006964 9.2e-92 340.9 272 63.2
Gorai.009G018600 Gossypium raimondii HOM05D005868 ORTHO05D006964 2.0e-91 339.7 273 63.4
Prupe.7G240900 Prunus persica HOM05D005868 ORTHO05D006964 1.0e-90 337.4 273 63.0
QL02p087973 Quercus lobata HOM05D005868 ORTHO05D006964 1.3e-90 337.0 274 62.8
Atru.chr7.1216 Acer truncatum HOM05D005868 ORTHO05D006964 6.6e-90 334.7 261 64.8
Ciclev10009129m.g Citrus clementina HOM05D005868 ORTHO05D006964 4.3e-89 332.0 252 64.7
MELO3C004517.2 Cucumis melo HOM05D005868 ORTHO05D006964 1.6e-88 330.1 272 62.9
FAN13G1606 Fragaria x ananassa HOM05D001017 ORTHO05D006964 2.1e-88 329.7 257 63.4
RcHm_v2.0_Chr2g0088741 Rosa chinensis HOM05D005868 ORTHO05D006964 3.6e-88 328.9 274 60.9
RcHm_v2.0_Chr2g0088971 Rosa chinensis HOM05D005868 ORTHO05D006964 6.2e-88 328.2 273 61.2
FAN08G1464 Fragaria x ananassa HOM05D005868 ORTHO05D006964 8.1e-88 327.8 258 63.2
FvH4_5g12980 Fragaria vesca HOM05D005868 ORTHO05D006964 1.1e-87 327.4 257 63.0
CsaV3_2G002760 Cucumis sativus L. HOM05D005868 ORTHO05D006964 2.3e-87 326.2 272 62.1
THA.LOC104808997 Tarenaya hassleriana HOM05D005868 ORTHO05D006964 2.3e-87 326.2 273 61.2
vmacro16514 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 2.3e-87 326.2 255 63.9
Gohir.A05G017300 Gossypium hirsutum HOM05D005868 ORTHO05D006964 3.1e-87 325.9 255 65.1
Rhsim01G0074500 Rhododendron simsii HOM05D005868 ORTHO05D006964 3.1e-87 325.9 274 62.0
Manes.07G113800 Manihot esculenta HOM05D005868 ORTHO05D006964 6.8e-87 324.7 273 65.6
Cpa.g.sc165.3 Carica papaya HOM05D005868 ORTHO05D006964 8.9e-87 324.3 273 60.4
Actinidia40461 Actinidia chinensis HOM05D005868 ORTHO05D006964 1.2e-86 323.9 273 60.8
FAN18G3119 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.2e-86 323.9 258 62.4
Dinv41522 Davidia involucrata HOM05D005868 ORTHO05D006964 2.0e-86 323.2 243 70.4
CiPaw.06G052800 Carya illinoinensis HOM05D005868 ORTHO05D006964 4.4e-86 322.0 255 63.5
MD02G1034400 Malus domestica HOM05D005868 ORTHO05D006964 5.8e-86 321.6 273 67.4
Gohir.D05G018200 Gossypium hirsutum HOM05D005868 ORTHO05D006964 1.7e-85 320.1 256 63.7
Sopen12g002620 Solanum pennellii HOM05D005868 ORTHO05D006964 2.9e-85 319.3 256 64.8
MD15G1175100 Malus domestica HOM05D005868 ORTHO05D006964 3.7e-85 318.9 273 60.4
VMungo0251G3516 Vigna mungo HOM05D005868 ORTHO05D006964 4.9e-85 318.5 268 61.9
Solyc12g006670.3 Solanum lycopersicum HOM05D005868 ORTHO05D006964 8.3e-85 317.8 256 64.5
CAN.G377.18 Capsicum annuum HOM05D005868 ORTHO05D006964 1.1e-84 317.4 253 64.0
Lj2A993T36 Lonicera japonica HOM05D005868 ORTHO05D006964 1.1e-84 317.4 246 64.2
Sp4g04970 Schrenkiella parvula HOM05D005868 ORTHO05D006964 1.1e-84 317.4 253 62.5
Sed0015563 Sechium edule HOM05D005868 ORTHO05D006964 1.9e-84 316.6 253 70.8
PGSC0003DMG402020668 Solanum tuberosum HOM05D005868 ORTHO05D006964 1.9e-84 316.6 256 64.1
Lj3g0005718 Lotus japonicus HOM05D005868 ORTHO05D006964 7.1e-84 314.7 276 61.2
Phvul.003G286500 Phaseolus vulgaris HOM05D005868 ORTHO05D006964 7.1e-84 314.7 271 60.5
AL4G17010 Arabidopsis lyrata HOM05D005868 ORTHO05D006964 9.2e-84 314.3 253 62.1
MSTRG.20108 Avicennia marina HOM05D005868 ORTHO05D006964 1.2e-83 313.9 274 59.5
Carub.0004s0528 Capsella rubella HOM05D005868 ORTHO05D006964 1.2e-83 313.9 272 58.8
Peaxi162Scf00984g00020 Petunia axillaris HOM05D005868 ORTHO05D006964 1.6e-83 313.5 281 64.8
Lalb_Chr12g0197851 Lupinus albus HOM05D005868 ORTHO05D006964 2.7e-83 312.8 273 59.3
Zm00001eb205580 Zea mays HOM05D005868 ORTHO05D006964 3.5e-83 312.4 251 62.5
AT2G25570 Arabidopsis thaliana HOM05D005868 ORTHO05D006964 4.6e-83 312.0 260 61.2
BcaC07g40857 Brassica carinata HOM05D005868 ORTHO05D006964 1.0e-82 310.8 254 59.4
Migut.N02220 Erythranthe guttata HOM05D005868 ORTHO05D006964 1.0e-82 310.8 275 60.4
C08p38550 Brassica napus HOM05D005868 ORTHO05D006964 1.3e-82 310.5 254 59.4
BolC8t51427H Brassica oleracea HOM05D005868 ORTHO05D006964 1.3e-82 310.5 254 59.4
Nitab4.5_0005139g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.7e-82 310.1 287 59.6
arahy.Tifrunner.gnm1.ann1.1Z3A91 Arachis hypogaea HOM05D005868 ORTHO05D006964 2.3e-82 309.7 256 60.9
QL93p0150_0012 Quercus lobata HOM05D005868 ORTHO05D006964 2.3e-82 309.7 240 65.0
ATR0322G055 Amborella trichopoda HOM05D005868 ORTHO05D006964 3.0e-82 309.3 248 62.9
BcaB08g35195 Brassica carinata HOM05D005868 ORTHO05D006964 3.0e-82 309.3 254 59.1
A09p55560 Brassica napus HOM05D005868 ORTHO05D006964 5.1e-82 308.5 253 59.3
BraA09t40958Z Brassica rapa HOM05D005868 ORTHO05D006964 5.1e-82 308.5 253 59.3
Medtr8g073315 Medicago truncatula HOM05D005868 ORTHO05D006964 6.6e-82 308.1 251 63.7
Aa31LG6G5930 Aethionema arabicum HOM05D005868 ORTHO05D006964 1.1e-81 307.4 289 56.1
Nn2g12624 Nelumbo nucifera HOM05D005868 ORTHO05D006964 1.1e-81 307.4 248 62.9
Os02g0202600 Oryza sativa ssp. japonica HOM05D005868 ORTHO05D006964 1.1e-81 307.4 249 62.7
Eucgr.C04189 Eucalyptus grandis HOM05D005868 ORTHO05D006964 2.5e-81 306.2 261 60.5
DCAR_009552 Daucus carota HOM05D005868 ORTHO05D006964 9.5e-81 304.3 250 61.6
TAR383G0149 Trochodendron aralioides HOM05D005868 ORTHO05D006964 2.1e-80 303.1 276 63.4
Glyma.08G274300 Glycine max HOM05D005868 ORTHO05D006964 1.1e-79 300.8 274 58.0
Glyma.18G237200 Glycine max HOM05D005868 ORTHO05D006964 1.4e-79 300.4 274 58.0
Potri.001G219400 Populus trichocarpa HOM05D005868 ORTHO05D006964 4.0e-79 298.9 249 67.1
RcHm_v2.0_Chr2g0089021 Rosa chinensis HOM05D005868 ORTHO05D006964 6.8e-79 298.1 247 61.1
Lsat_1_v5_gn_2_95580 Lactuca sativa HOM05D005868 ORTHO05D006964 1.2e-78 297.4 273 56.4
ClCG11G002940 Citrullus lanatus HOM05D005868 ORTHO05D006964 1.5e-78 297.0 318 52.5
Aqoxy6G01600 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.0e-78 296.6 269 59.9
Aqoxy7G02135 Aquilegia oxysepala HOM05D005868 ORTHO05D006964 2.0e-78 296.6 269 59.9
PSO455G0232 Papaver somniferum HOM05D005868 ORTHO05D006964 5.8e-78 295.0 271 57.2
DCAR_023114 Daucus carota HOM05D005868 ORTHO05D006964 6.4e-77 291.6 267 57.3
Sabra16G0124800 Salix brachista HOM05D005868 ORTHO05D006964 8.4e-77 291.2 256 59.8
PSO170G5445 Papaver somniferum HOM05D005868 ORTHO05D006964 1.1e-76 290.8 269 56.1
ECA238G3092 Erigeron canadensis HOM05D005868 ORTHO05D006964 2.4e-76 289.7 273 54.6
Haze_25605 Corylus avellana HOM05D005868 ORTHO05D006964 5.4e-76 288.5 293 54.6
unitig_37.g12428 Utricularia gibba HOM05D005868 ORTHO05D006964 5.4e-76 288.5 248 58.9
SHI18654 Sapria himalayana HOM05D005868 ORTHO05D006964 7.1e-76 288.1 249 59.0
Medtr0040s0110 Medicago truncatula HOM05D005868 ORTHO05D006964 4.6e-75 285.4 250 60.4
GSVIVG01015515001 Vitis vinifera HOM05D000032 ORTHO05D001620 6.0e-75 285.0 249 59.4
HPP92_000663 Vanilla planifolia HOM05D005868 ORTHO05D006964 1.3e-74 283.9 271 55.0
TPR.G21777 Trifolium pratense HOM05D005868 ORTHO05D006964 3.9e-74 282.3 272 55.9
HPP92_000683 Vanilla planifolia HOM05D005868 ORTHO05D006964 3.3e-73 279.3 270 53.7
PGR102G1613 Punica granatum HOM05D005868 ORTHO05D006964 7.3e-73 278.1 273 63.0
Cc06_g08680 Coffea canephora HOM05D005868 ORTHO05D006964 3.6e-72 275.8 175 75.4
HanXRQChr07g0197781 Helianthus annuus HOM05D005868 ORTHO05D006964 4.7e-72 275.4 240 58.8
CSS0040694 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 1.1e-71 274.2 302 59.3
CSS0035520 Camellia sinensis var. sinensis HOM05D005868 ORTHO05D006964 2.4e-71 273.1 305 59.7
EL10Ac8g18635 Beta vulgaris HOM05D005868 ORTHO05D006964 2.6e-70 269.6 273 53.8
arahy.Tifrunner.gnm1.ann1.T37JIE Arachis hypogaea HOM05D005868 ORTHO05D006964 5.8e-70 268.5 256 55.5
Ca_25916_v3 Cicer arietinum L. HOM05D005868 ORTHO05D006964 9.9e-70 267.7 254 66.5
Hund09137 Selenicereus undatus HOM05D005868 ORTHO05D006964 3.2e-68 262.7 273 62.3
TWI32G0760 Tripterygium wilfordii HOM05D005868 ORTHO05D006964 1.6e-67 260.4 260 65.0
Sc08g0006690 Simmondsia chinensis HOM05D005868 ORTHO05D006964 2.3e-66 256.5 267 62.5
Prupe.6G277700 Prunus persica HOM05D005868 ORTHO05D006964 3.0e-66 256.1 273 51.6
Thhalv10023629m.g Eutrema salsugineum HOM05D005868 ORTHO05D006964 3.9e-66 255.8 175 69.1
CARHR115770 Cardamine hirsuta HOM05D005868 ORTHO05D006964 7.3e-65 251.5 155 74.8
Ah.09g226020 Amaranthus hybridus HOM05D005868 ORTHO05D006964 1.3e-64 250.8 251 63.3
AUR62013373 Chenopodium quinoa HOM05D005868 ORTHO05D006964 1.6e-64 250.4 253 64.0
SGA_v2.0_scaffold120G32883 Striga asiatica HOM05D005868 ORTHO05D006964 2.8e-64 249.6 250 67.6
Eucgr.C04191 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.2e-62 244.2 210 59.0
SEGI_01723 Sequoiadendron giganteum HOM05D005868 ORTHO05D006964 5.6e-57 225.3 276 46.7
HanXRQChr14g0452021 Helianthus annuus HOM05D005868 ORTHO05D006964 6.2e-56 221.9 242 50.8
CAN.G377.12 Capsicum annuum HOM05D005868 ORTHO05D006964 4.5e-54 215.7 256 49.6
SalBow5G0777 Salvia bowleyana HOM05D005868 ORTHO05D006964 4.9e-53 212.2 292 45.9
CDE04G0864 Ceratophyllum demersum HOM05D005868 ORTHO05D006964 5.6e-49 198.7 213 62.4
Nitab4.5_0010819g0020 Nicotiana tabacum HOM05D005868 ORTHO05D006964 1.5e-41 174.1 170 55.9
Mapoly0058s0058 Marchantia polymorpha HOM05D005868 ORTHO05D006964 1.2e-38 164.5 253 39.5
vmacro20542 Vaccinium macrocarpon HOM05D005868 ORTHO05D006964 1.7e-37 160.6 356 36.5
Nitab4.5_0002556g0090 Nicotiana tabacum HOM05D005868 ORTHO05D006964 3.8e-37 159.5 160 53.8
MBI04_g07645_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 2.7e-35 153.3 173 50.3
AUR62033475 Chenopodium quinoa HOM05D005868 ORTHO05D006964 3.7e-32 142.9 239 37.7
FAN23G1471 Fragaria x ananassa HOM05D005868 ORTHO05D006964 1.4e-31 141.0 114 62.3
Pp3c21_8470 Physcomitrium patens HOM05D005868 ORTHO05D006964 4.1e-31 139.4 152 48.7
RcHm_v2.0_Chr2g0088781 Rosa chinensis HOM05D005868 ORTHO05D006964 7.7e-30 135.2 88 72.7
FvH4_1g05000 Fragaria vesca HOM05D005868 ORTHO05D006964 3.0e-26 123.2 76 76.3
RcHm_v2.0_Chr2g0088941 Rosa chinensis HOM05D005868 ORTHO05D006964 3.1e-23 113.2 131 48.1
RcHm_v2.0_Chr2g0088921 Rosa chinensis HOM05D005868 ORTHO05D006964 3.7e-16 89.7 157 36.3
MBI04_g07643_MAGBIO Magnolia biondii HOM05D005868 ORTHO05D006964 7.7e-14 82.0 39 92.3
Eucgr.C03944 Eucalyptus grandis HOM05D005868 ORTHO05D006964 1.0e-13 81.6 113 41.6
CBR_g783 Chara braunii HOM05D005868 ORTHO05D006964 4.2e-12 76.3 155 35.5
RcHm_v2.0_Chr2g0088761 Rosa chinensis HOM05D005868 ORTHO05D006964 9.4e-12 75.1 71 49.3
CARHR115780 Cardamine hirsuta HOM05D005868 ORTHO05D006964 3.6e-11 73.2 71 50.7
FAN02G0970 Fragaria x ananassa HOM05D023359 ORTHO05D006964 3.0e-10 70.1 69 49.3
Eucgr.L03701 Eucalyptus grandis HOM05D005868 ORTHO05D006964 8.8e-10 68.6 57 61.4
RcHm_v2.0_Chr3g0491871 Rosa chinensis HOM05D005868 ORTHO05D006964 6.3e-08 62.4 71 46.5
RcHm_v2.0_Chr2g0088771 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-07 61.2 37 75.7
RcHm_v2.0_Chr2g0088931 Rosa chinensis HOM05D005868 ORTHO05D006964 1.4e-07 61.2 37 75.7
Psat7g152720 Pisum sativum HOM05D005868 ORTHO05D006964 2.0e-06 57.4 60 51.7


User provided reference genes

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