Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1437 Cannabis sativa HOM05D007059 ORTHO05D009155 2.5e-125 452.2 247 100.0
Rhsim04G0168700 Rhododendron simsii HOM05D007059 ORTHO05D009155 1.5e-64 250.4 145 84.8
Gohir.D01G138500 Gossypium hirsutum HOM05D007059 ORTHO05D009155 1.2e-63 247.3 133 90.2
Gorai.002G167400 Gossypium raimondii HOM05D007059 ORTHO05D009155 1.2e-63 247.3 133 90.2
Potri.010G169700 Populus trichocarpa HOM05D007059 ORTHO05D009155 1.2e-63 247.3 157 78.3
Thecc.02G295400 Theobroma cacao HOM05D007059 ORTHO05D009155 1.2e-63 247.3 150 81.3
Sabra10G0129500 Salix brachista HOM05D007059 ORTHO05D009155 1.6e-63 246.9 126 93.7
vmacro08590 Vaccinium macrocarpon HOM05D007059 ORTHO05D009155 1.6e-63 246.9 133 87.2
Nn4g24915 Nelumbo nucifera HOM05D007059 ORTHO05D009155 2.1e-63 246.5 150 81.3
CSS0038027 Camellia sinensis var. sinensis HOM05D007059 ORTHO05D009155 2.8e-63 246.1 141 83.7
Gohir.A01G145900 Gossypium hirsutum HOM05D007059 ORTHO05D009155 3.6e-63 245.7 133 89.5
Lj3g0001367 Lotus japonicus HOM05D007059 ORTHO05D009155 3.6e-63 245.7 136 86.0
MBI06_g22349_MAGBIO Magnolia biondii HOM05D007059 ORTHO05D009155 4.7e-63 245.4 146 84.9
CAN.G624.23 Capsicum annuum HOM05D007059 ORTHO05D009155 6.2e-63 245.0 144 84.0
Ciclev10033522m.g Citrus clementina HOM05D007059 ORTHO05D009155 6.2e-63 245.0 142 85.2
COL.COLO4_16620 Corchorus olitorius HOM05D007059 ORTHO05D009155 6.2e-63 245.0 150 80.7
Nitab4.5_0002113g0150 Nicotiana tabacum HOM05D007059 ORTHO05D009155 6.2e-63 245.0 147 80.3
Nitab4.5_0007261g0020 Nicotiana tabacum HOM05D007059 ORTHO05D009155 6.2e-63 245.0 147 80.3
Prupe.1G344600 Prunus persica HOM05D007059 ORTHO05D009155 6.2e-63 245.0 246 57.3
RcHm_v2.0_Chr4g0446371 Rosa chinensis HOM05D007059 ORTHO05D009155 8.1e-63 244.6 251 56.2
FvH4_4g36660 Fragaria vesca HOM05D007059 ORTHO05D009155 1.1e-62 244.2 256 53.9
FAN12G0665 Fragaria x ananassa HOM05D007059 ORTHO05D009155 1.1e-62 244.2 257 53.7
PSO063G1277 Papaver somniferum HOM05D007059 ORTHO05D009155 1.1e-62 244.2 189 67.2
Phvul.011G032300 Phaseolus vulgaris HOM05D007059 ORTHO05D009155 1.1e-62 244.2 143 84.6
MD16G1006000 Malus domestica HOM05D007059 ORTHO05D009155 1.4e-62 243.8 146 80.8
Peaxi162Scf01172g00004 Petunia axillaris HOM05D007059 ORTHO05D009155 1.4e-62 243.8 147 80.3
PGSC0003DMG400032539 Solanum tuberosum HOM05D007059 ORTHO05D009155 1.8e-62 243.4 144 82.6
TAR629G1440 Trochodendron aralioides HOM05D007059 ORTHO05D009155 1.8e-62 243.4 136 86.8
VMungo1127G1389 Vigna mungo HOM05D007059 ORTHO05D009155 1.8e-62 243.4 143 84.6
CiPaw.05G167400 Carya illinoinensis HOM05D007059 ORTHO05D009155 2.3e-62 243.0 150 80.0
Glyma.11G104100 Glycine max HOM05D007059 ORTHO05D009155 2.3e-62 243.0 143 83.2
HanXRQChr01g0028541 Helianthus annuus HOM05D007059 ORTHO05D009155 2.3e-62 243.0 126 92.1
PSO782G1004 Papaver somniferum HOM05D007059 ORTHO05D009155 2.3e-62 243.0 141 83.7
MSTRG.2053 Avicennia marina HOM05D007059 ORTHO05D009155 3.1e-62 242.7 130 89.2
Glyma.12G029100 Glycine max HOM05D007059 ORTHO05D009155 3.1e-62 242.7 143 83.2
Sopen04g004490 Solanum pennellii HOM05D007059 ORTHO05D009155 3.1e-62 242.7 147 80.3
Actinidia38411 Actinidia chinensis HOM05D007059 ORTHO05D009155 4.0e-62 242.3 133 85.7
unitig_27.g25281 Utricularia gibba HOM05D007059 ORTHO05D009155 4.0e-62 242.3 129 89.1
GSVIVG01010187001 Vitis vinifera HOM05D007059 ORTHO05D009155 5.2e-62 241.9 205 63.4
Eucgr.G02016 Eucalyptus grandis HOM05D007059 ORTHO05D009155 6.8e-62 241.5 142 81.0
ECA234G4546 Erigeron canadensis HOM05D007059 ORTHO05D009155 8.9e-62 241.1 142 81.0
Manes.16G044801 Manihot esculenta HOM05D007059 ORTHO05D009155 8.9e-62 241.1 132 87.9
Sc10g0008670 Simmondsia chinensis HOM05D007059 ORTHO05D009155 8.9e-62 241.1 129 89.1
Atru.chr11.1222 Acer truncatum HOM05D007059 ORTHO05D009155 1.2e-61 240.7 126 90.5
Medtr4g074210 Medicago truncatula HOM05D007059 ORTHO05D009155 1.2e-61 240.7 142 83.1
Solyc04g009370.4 Solanum lycopersicum HOM05D007059 ORTHO05D009155 1.5e-61 240.4 147 79.6
Aqoxy3G04246 Aquilegia oxysepala HOM05D007059 ORTHO05D009155 2.0e-61 240.0 133 87.2
Lsat_1_v5_gn_4_26421 Lactuca sativa HOM05D007059 ORTHO05D009155 2.0e-61 240.0 126 89.7
FAN07G2854 Fragaria x ananassa HOM05D007059 ORTHO05D009155 2.6e-61 239.6 257 52.9
BcaC09g48947 Brassica carinata HOM05D007059 ORTHO05D009155 5.8e-61 238.4 145 81.4
C01p44250 Brassica napus HOM05D007059 ORTHO05D009155 5.8e-61 238.4 145 81.4
BolC1t04385H Brassica oleracea HOM05D007059 ORTHO05D009155 5.8e-61 238.4 145 81.4
A01p34850 Brassica napus HOM05D007059 ORTHO05D009155 2.9e-60 236.1 125 91.2
BraA01t03568Z Brassica rapa HOM05D007059 ORTHO05D009155 2.9e-60 236.1 125 91.2
Carub.0003s1980 Capsella rubella HOM05D007059 ORTHO05D009155 2.9e-60 236.1 125 91.2
Ca_03042_v3 Cicer arietinum L. HOM05D007059 ORTHO05D009155 2.9e-60 236.1 130 86.9
Migut.E00704 Erythranthe guttata HOM05D007059 ORTHO05D009155 2.9e-60 236.1 143 80.4
Lalb_Chr01g0001591 Lupinus albus HOM05D007059 ORTHO05D009155 2.9e-60 236.1 146 79.5
Sp3g17910 Schrenkiella parvula HOM05D007059 ORTHO05D009155 2.9e-60 236.1 125 91.2
Thhalv10021482m.g Eutrema salsugineum HOM05D007059 ORTHO05D009155 3.7e-60 235.7 125 91.2
Psat7g174240 Pisum sativum HOM05D007059 ORTHO05D009155 3.7e-60 235.7 140 80.7
AL3G33460 Arabidopsis lyrata HOM05D007059 ORTHO05D009155 6.4e-60 235.0 125 90.4
CARHR095430 Cardamine hirsuta HOM05D007059 ORTHO05D009155 6.4e-60 235.0 125 90.4
TPR.G21564 Trifolium pratense HOM05D007059 ORTHO05D009155 6.4e-60 235.0 130 86.9
Aa31LG8G6740 Aethionema arabicum HOM05D007059 ORTHO05D009155 8.3e-60 234.6 125 89.6
AUR62017646 Chenopodium quinoa HOM05D007059 ORTHO05D009155 1.1e-59 234.2 133 85.0
Lj3A851T65 Lonicera japonica HOM05D007059 ORTHO05D009155 1.1e-59 234.2 219 59.4
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 1.4e-59 233.8 150 77.3
AUR62012864 Chenopodium quinoa HOM05D007059 ORTHO05D009155 1.4e-59 233.8 130 86.9
Cc11_g00200 Coffea canephora HOM05D007059 ORTHO05D009155 1.4e-59 233.8 136 83.8
ATR0124G031 Amborella trichopoda HOM05D007059 ORTHO05D009155 1.9e-59 233.4 125 87.2
ClCG11G001160 Citrullus lanatus HOM05D007059 ORTHO05D009155 5.4e-59 231.9 126 86.5
MELO3C020030.2 Cucumis melo HOM05D007059 ORTHO05D009155 5.4e-59 231.9 126 86.5
Sed0015909 Sechium edule HOM05D007059 ORTHO05D009155 2.1e-58 229.9 142 78.2
EL10Ac9g22903 Beta vulgaris HOM05D007059 ORTHO05D009155 3.5e-58 229.2 133 83.5
HPP92_002491 Vanilla planifolia HOM05D007059 ORTHO05D009155 1.7e-57 226.9 125 86.4
HPP92_002544 Vanilla planifolia HOM05D007059 ORTHO05D009155 1.7e-57 226.9 125 86.4
arahy.Tifrunner.gnm1.ann1.NRJ0Q8 Arachis hypogaea HOM05D007059 ORTHO05D009155 6.6e-57 224.9 139 81.3
arahy.Tifrunner.gnm1.ann1.PC0HA4 Arachis hypogaea HOM05D007059 ORTHO05D009155 6.6e-57 224.9 139 81.3
Zm00001eb259420 Zea mays HOM05D007059 ORTHO05D009155 9.5e-56 221.1 126 82.5
Oeu027905.1 Olea europaea HOM05D007059 ORTHO05D009155 5.2e-54 215.3 133 79.7
Pp3c2_14430 Physcomitrium patens HOM05D007059 ORTHO05D009155 9.9e-53 211.1 144 70.1
Hund08500 Selenicereus undatus HOM05D007059 ORTHO05D009155 3.2e-51 206.1 114 88.6
SMO114G0039 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 7.1e-51 204.9 125 77.6
Cpa.g.sc298.2 Carica papaya HOM05D007059 ORTHO05D009155 1.2e-50 204.1 133 77.4
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.2e-50 204.1 113 86.7
Pp3c10_16080 Physcomitrium patens HOM05D007059 ORTHO05D009155 3.5e-50 202.6 138 71.0
AagrBONN_evm.TU.Sc2ySwM_344.1288 Anthoceros agrestis HOM05D007059 ORTHO05D009155 7.8e-50 201.4 133 70.7
Duzib251G0490 Durio zibethinus HOM05D007059 ORTHO05D009155 1.7e-49 200.3 143 72.7
SGA_v2.0_scaffold88G27235 Striga asiatica HOM05D007059 ORTHO05D009155 1.7e-49 200.3 125 77.6
THA.LOC104801903 Tarenaya hassleriana HOM05D007059 ORTHO05D009155 6.6e-49 198.4 145 71.0
TWI77G0260 Tripterygium wilfordii HOM05D007059 ORTHO05D009155 1.1e-48 197.6 114 84.2
Migut.E00613 Erythranthe guttata HOM05D007059 ORTHO05D009155 2.5e-48 196.4 114 82.5
Mapoly0055s0010 Marchantia polymorpha HOM05D007059 ORTHO05D009155 2.4e-46 189.9 132 66.7
Haze_11738 Corylus avellana HOM05D007059 ORTHO05D009155 3.1e-46 189.5 128 74.2
Actinidia13703 Actinidia chinensis HOM05D007059 ORTHO05D009155 5.8e-37 158.7 133 61.7
CBR_g48375 Chara braunii HOM05D007059 ORTHO05D009155 3.2e-35 152.9 131 54.2
CDE04G0067 Ceratophyllum demersum HOM05D007059 ORTHO05D009155 7.9e-34 148.3 122 65.6
Dinv01917 Davidia involucrata HOM05D007059 ORTHO05D009155 4.8e-31 139.0 150 54.0
PGR031G0357 Punica granatum HOM05D007059 ORTHO05D009155 5.3e-30 135.6 136 55.1
Actinidia14379 Actinidia chinensis HOM05D007059 ORTHO05D009155 3.7e-23 112.8 56 92.9
BolC5t33201H Brassica oleracea HOM05D007059 ORTHO05D009155 8.1e-23 111.7 84 71.4
CsaV3_5G013210 Cucumis sativus L. HOM05D007059 ORTHO05D009155 1.8e-22 110.5 75 73.3
SEGI_27177 Sequoiadendron giganteum HOM05D007059 ORTHO05D009155 3.4e-21 106.3 66 75.8
AT3G19900 Arabidopsis thaliana HOM05D007059 ORTHO05D009155 4.9e-20 102.4 58 82.8
Cre01.g007050 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D009155 1.8e-17 94.0 115 43.5
SMO364G0884 Selaginella moellendorffii HOM05D007059 ORTHO05D009155 1.5e-16 90.9 67 65.7
Cre03.g197850 Chlamydomonas reinhardtii HOM05D007059 ORTHO05D034487 3.4e-13 79.7 113 33.6
BraA05t21808Z Brassica rapa HOM05D007059 ORTHO05D040342 1.2e-10 71.2 45 80.0
MCO14G049 Micromonas commoda HOM05D007059 ORTHO05D009155 6.1e-10 68.9 101 35.6
A05p29230 Brassica napus HOM05D007059 ORTHO05D040342 1.0e-09 68.2 45 77.8


User provided reference genes

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