Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1357 Cannabis sativa HOM05D004381 ORTHO05D005200 3.2e-137 491.9 277 100.0
Atru.chr3.2598 Acer truncatum HOM05D004381 ORTHO05D005200 6.1e-128 461.1 277 92.8
Cfa009743 Carpinus fangiana HOM05D004381 ORTHO05D005200 1.0e-127 460.3 277 92.8
FvH4_3g43050 Fragaria vesca HOM05D004381 ORTHO05D005200 3.4e-126 455.3 277 92.8
FAN11G3745 Fragaria x ananassa HOM05D004381 ORTHO05D005200 3.4e-126 455.3 277 92.8
FAN16G2672 Fragaria x ananassa HOM05D004381 ORTHO05D005200 9.8e-126 453.8 277 92.4
RcHm_v2.0_Chr5g0077111 Rosa chinensis HOM05D004381 ORTHO05D005200 2.2e-125 452.6 277 91.7
FAN21G3999 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.9e-125 451.4 277 92.1
Migut.D00582 Erythranthe guttata HOM05D004381 ORTHO05D005200 8.3e-125 450.7 277 89.5
TAR623G1292 Trochodendron aralioides HOM05D004381 ORTHO05D005200 1.1e-124 450.3 277 89.5
Rhsim13G0223600 Rhododendron simsii HOM05D004381 ORTHO05D005200 1.8e-124 449.5 277 89.5
CSS0020783 Camellia sinensis var. sinensis HOM05D004381 ORTHO05D005200 2.4e-124 449.1 277 89.2
Prupe.6G023700 Prunus persica HOM05D004381 ORTHO05D005200 4.1e-124 448.4 277 89.9
Ca_01288_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 88.1
COL.COLO4_24848 Corchorus olitorius HOM05D004381 ORTHO05D005200 1.2e-123 446.8 277 88.4
Lalb_Chr22g0352331 Lupinus albus HOM05D004381 ORTHO05D005200 7.8e-123 444.1 277 87.7
CiPaw.13G163200 Carya illinoinensis HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 88.4
Thecc.09G228300 Theobroma cacao HOM05D004381 ORTHO05D005200 1.0e-122 443.7 277 88.4
Ciclev10016213m.g Citrus clementina HOM05D004381 ORTHO05D005200 1.3e-122 443.4 277 89.2
Manes.06G166500 Manihot esculenta HOM05D004381 ORTHO05D005200 1.7e-122 443.0 277 87.7
CiPaw.14G121000 Carya illinoinensis HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 88.1
TPR.G6819 Trifolium pratense HOM05D004381 ORTHO05D005200 2.3e-122 442.6 277 87.7
Gohir.A08G013200 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.1
Gorai.004G018900 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 88.1
MD11G1029400 Malus domestica HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 89.2
Medtr2g098150 Medicago truncatula HOM05D004381 ORTHO05D005200 3.9e-122 441.8 277 87.7
MSTRG.21391 Avicennia marina HOM05D004381 ORTHO05D005200 1.1e-121 440.3 277 87.4
Eucgr.J00789 Eucalyptus grandis HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 87.7
Potri.001G018800 Populus trichocarpa HOM05D004381 ORTHO05D005200 1.5e-121 439.9 277 87.0
Gohir.D08G023600 Gossypium hirsutum HOM05D004381 ORTHO05D005200 1.9e-121 439.5 277 87.7
QL01p005255 Quercus lobata HOM05D004381 ORTHO05D005200 1.9e-121 439.5 276 88.4
Phvul.L011443 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 2.5e-121 439.1 277 87.0
Glyma.13G340900 Glycine max HOM05D004381 ORTHO05D005200 3.3e-121 438.7 277 87.0
Duzib150G0594 Durio zibethinus HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.0
Lsat_1_v5_gn_6_48200 Lactuca sativa HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.0
GSVIVG01025302001 Vitis vinifera HOM05D004381 ORTHO05D005200 4.3e-121 438.3 277 87.4
Cc06_g22560 Coffea canephora HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 86.3
PSO210G6888 Papaver somniferum HOM05D004381 ORTHO05D005200 5.6e-121 438.0 277 86.6
Glyma.15G033500 Glycine max HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 86.6
Solyc11g062020.2 Solanum lycopersicum HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 86.3
Sopen11g023990 Solanum pennellii HOM05D004381 ORTHO05D005200 9.5e-121 437.2 277 86.3
Hund22064 Selenicereus undatus HOM05D004381 ORTHO05D005200 1.6e-120 436.4 277 86.3
Aqoxy7G00799 Aquilegia oxysepala HOM05D004381 ORTHO05D005200 2.1e-120 436.0 277 87.4
ECA233G0542 Erigeron canadensis HOM05D004381 ORTHO05D005200 2.8e-120 435.6 277 85.9
Lj3g0004330 Lotus japonicus HOM05D004381 ORTHO05D005200 3.6e-120 435.3 277 86.6
PSO210G5188 Papaver somniferum HOM05D004381 ORTHO05D005200 4.7e-120 434.9 277 86.3
Sp3g18900 Schrenkiella parvula HOM05D004381 ORTHO05D005200 1.4e-119 433.3 277 86.3
HanXRQChr02g0056281 Helianthus annuus HOM05D004381 ORTHO05D005200 4.0e-119 431.8 277 85.2
Potri.003G205100 Populus trichocarpa HOM05D004381 ORTHO05D005200 6.8e-119 431.0 277 86.3
THA.LOC104817902 Tarenaya hassleriana HOM05D004381 ORTHO05D005200 1.2e-118 430.3 277 85.9
Migut.O00580 Erythranthe guttata HOM05D004381 ORTHO05D005200 1.5e-118 429.9 276 85.9
Thhalv10021300m.g Eutrema salsugineum HOM05D004381 ORTHO05D005200 2.0e-118 429.5 277 84.5
A05p27840 Brassica napus HOM05D004381 ORTHO05D005200 2.6e-118 429.1 274 85.8
Os02g0196000 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 2.6e-118 429.1 277 84.5
MSTRG.18417 Avicennia marina HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 85.9
MD03G1024300 Malus domestica HOM05D004381 ORTHO05D005200 3.4e-118 428.7 277 88.4
DCAR_031567 Daucus carota HOM05D004381 ORTHO05D005200 4.4e-118 428.3 277 85.6
Peaxi162Scf00029g02914 Petunia axillaris HOM05D004381 ORTHO05D005200 5.8e-118 427.9 277 84.1
Ah.06g193660 Amaranthus hybridus HOM05D004381 ORTHO05D005200 9.8e-118 427.2 278 84.9
BraA05t21671Z Brassica rapa HOM05D004381 ORTHO05D005200 9.8e-118 427.2 274 85.4
MELO3C014607.2 Cucumis melo HOM05D004381 ORTHO05D005200 1.7e-117 426.4 277 85.6
AL3G34820 Arabidopsis lyrata HOM05D004381 ORTHO05D005200 3.7e-117 425.2 277 84.1
Oeu035739.1 Olea europaea HOM05D004381 ORTHO05D005200 4.9e-117 424.9 261 88.5
Haze_23102 Corylus avellana HOM05D004381 ORTHO05D005200 8.3e-117 424.1 277 82.3
Sed0000340 Sechium edule HOM05D004381 ORTHO05D005200 8.3e-117 424.1 277 85.9
CAN.G71.8 Capsicum annuum HOM05D004381 ORTHO05D005200 1.1e-116 423.7 283 82.7
AT3G20870 Arabidopsis thaliana HOM05D004381 ORTHO05D005200 1.9e-116 422.9 277 83.4
TWI60G0262 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 7.0e-116 421.0 277 84.8
VMungo1080G0554 Vigna mungo HOM05D004381 ORTHO05D005200 1.2e-115 420.2 301 79.4
Nn2g15439 Nelumbo nucifera HOM05D004381 ORTHO05D005200 1.6e-115 419.9 277 83.4
HPP92_020510 Vanilla planifolia HOM05D004381 ORTHO05D005200 1.7e-114 416.4 277 84.1
CARHR096750 Cardamine hirsuta HOM05D004381 ORTHO05D005200 2.3e-114 416.0 275 83.6
C05p43180 Brassica napus HOM05D004381 ORTHO05D005200 1.1e-113 413.7 275 84.0
BolC5t33048H Brassica oleracea HOM05D004381 ORTHO05D005200 1.1e-113 413.7 275 84.0
Sabra01G0013400 Salix brachista HOM05D004381 ORTHO05D005200 1.9e-113 412.9 321 74.5
arahy.Tifrunner.gnm1.ann1.E88S00 Arachis hypogaea HOM05D004381 ORTHO05D005200 5.6e-113 411.4 320 73.1
Aa31LG8G7690 Aethionema arabicum HOM05D004381 ORTHO05D005200 7.3e-113 411.0 280 83.2
SEGI_07837 Sequoiadendron giganteum HOM05D004381 ORTHO05D005200 7.3e-113 411.0 278 81.3
Nitab4.5_0002026g0030 Nicotiana tabacum HOM05D004381 ORTHO05D005200 1.6e-112 409.8 261 85.1
Nitab4.5_0000492g0060 Nicotiana tabacum HOM05D004381 ORTHO05D005200 4.7e-112 408.3 261 84.7
EL10Ac4g10297 Beta vulgaris HOM05D004381 ORTHO05D005200 1.8e-111 406.4 270 84.4
AUR62000098 Chenopodium quinoa HOM05D004381 ORTHO05D005200 5.2e-111 404.8 274 82.8
Lalb_Chr19g0138141 Lupinus albus HOM05D004381 ORTHO05D005200 3.4e-110 402.1 278 79.1
Phvul.011G058500 Phaseolus vulgaris HOM05D004381 ORTHO05D005200 5.8e-110 401.4 275 80.4
SGA_v2.0_scaffold247G44855 Striga asiatica HOM05D004381 ORTHO05D005200 5.8e-110 401.4 299 72.2
MSTRG.21390 Avicennia marina HOM05D004381 ORTHO05D005200 2.2e-109 399.4 277 80.9
Psat7g213080 Pisum sativum HOM05D004381 ORTHO05D005200 3.7e-109 398.7 273 80.6
Sabra03G0151600 Salix brachista HOM05D004381 ORTHO05D005200 6.4e-109 397.9 318 71.4
ATR0605G196 Amborella trichopoda HOM05D004381 ORTHO05D005200 1.1e-108 397.1 264 84.5
Actinidia16315 Actinidia chinensis HOM05D004381 ORTHO05D005200 1.9e-108 396.4 318 68.2
ClCG02G023360 Citrullus lanatus HOM05D004381 ORTHO05D005200 7.1e-108 394.4 255 86.7
Carub.0003s2085 Capsella rubella HOM05D004381 ORTHO05D005200 7.8e-107 391.0 277 79.4
MBI04_g13625_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 1.0e-106 390.6 278 77.7
AUR62019272 Chenopodium quinoa HOM05D004381 ORTHO05D005200 1.3e-106 390.2 269 76.6
BcaC05g28200 Brassica carinata HOM05D004381 ORTHO05D005200 1.9e-105 386.3 274 74.5
Lj3g0009499 Lotus japonicus HOM05D004381 ORTHO05D005200 3.3e-105 385.6 278 77.7
arahy.Tifrunner.gnm1.ann1.LPI13M Arachis hypogaea HOM05D004381 ORTHO05D005200 9.5e-105 384.0 273 78.8
vmacro04193 Vaccinium macrocarpon HOM05D004381 ORTHO05D005200 3.6e-104 382.1 256 82.8
Nn7g36163 Nelumbo nucifera HOM05D004381 ORTHO05D005200 2.3e-103 379.4 277 77.3
VMungo1127G1882 Vigna mungo HOM05D004381 ORTHO05D005200 2.3e-103 379.4 262 80.2
CDE10G0019 Ceratophyllum demersum HOM05D004381 ORTHO05D005200 1.2e-102 377.1 256 80.5
Medtr4g065640 Medicago truncatula HOM05D004381 ORTHO05D005200 4.4e-102 375.2 275 77.5
Zm00001eb205960 Zea mays HOM05D004381 ORTHO05D005200 7.6e-102 374.4 282 75.9
MBI01_g27615_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 2.9e-101 372.5 353 60.3
arahy.Tifrunner.gnm1.ann1.T21L4I Arachis hypogaea HOM05D004381 ORTHO05D005200 5.4e-100 368.2 335 66.9
CsaV3_4G024140 Cucumis sativus L. HOM05D004381 ORTHO05D005200 1.0e-98 364.0 230 87.8
Duzib168G0673 Durio zibethinus HOM05D004381 ORTHO05D005200 2.8e-96 355.9 230 83.0
Dinv08032 Davidia involucrata HOM05D004381 ORTHO05D005200 4.0e-95 352.1 222 88.3
Zm00001eb213530 Zea mays HOM05D004381 ORTHO05D005200 7.6e-94 347.8 278 66.5
SMO347G0569 Selaginella moellendorffii HOM05D004381 ORTHO05D005200 8.4e-93 344.4 267 72.3
Sc06g0004510 Simmondsia chinensis HOM05D004381 ORTHO05D005200 7.1e-92 341.3 222 86.5
Mapoly0039s0091 Marchantia polymorpha HOM05D004381 ORTHO05D005200 1.5e-89 333.6 277 66.8
FAN25G0848 Fragaria x ananassa HOM05D004381 ORTHO05D005200 4.3e-89 332.0 313 67.1
Ca_20572_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.3e-88 330.5 250 75.6
Ca_30507_v3 Cicer arietinum L. HOM05D004381 ORTHO05D005200 1.3e-88 330.5 250 75.6
AagrBONN_evm.TU.Sc2ySwM_362.691 Anthoceros agrestis HOM05D004381 ORTHO05D005200 1.8e-87 326.6 281 67.6
Lj1A348T17 Lonicera japonica HOM05D004381 ORTHO05D005200 6.9e-87 324.7 224 82.1
Pp3c16_16530 Physcomitrium patens HOM05D004381 ORTHO05D005200 2.6e-86 322.8 283 67.1
arahy.Tifrunner.gnm1.ann1.BUZ3KN Arachis hypogaea HOM05D004381 ORTHO05D005200 3.4e-86 322.4 274 68.6
Glyma.11G132500 Glycine max HOM05D004381 ORTHO05D005200 1.3e-85 320.5 274 64.2
arahy.Tifrunner.gnm1.ann1.N626J4 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.8e-85 318.9 274 68.2
HanXRQChr17g0534131 Helianthus annuus HOM05D004381 ORTHO05D005200 2.4e-71 273.1 258 60.9
Glyma.12G056900 Glycine max HOM05D004381 ORTHO05D005200 4.5e-70 268.9 187 80.7
Os08g0100200 Oryza sativa ssp. japonica HOM05D004381 ORTHO05D005200 1.6e-67 260.4 287 53.3
arahy.Tifrunner.gnm1.ann1.H592TP Arachis hypogaea HOM05D004381 ORTHO05D005200 1.6e-64 250.4 278 53.2
unitig_26.g10133 Utricularia gibba HOM05D004381 ORTHO05D005200 2.5e-57 226.5 155 73.5
Psat1g173960 Pisum sativum HOM05D004381 ORTHO05D005200 1.6e-56 223.8 145 88.3
TPR.G39903 Trifolium pratense HOM05D004381 ORTHO05D005200 1.4e-55 220.7 181 74.6
Dinv36275 Davidia involucrata HOM05D004381 ORTHO05D005200 2.6e-54 216.5 129 85.3
Dinv36273 Davidia involucrata HOM05D004381 ORTHO05D005200 1.0e-53 214.5 138 79.7
Cpa.g.sc84.75 Carica papaya HOM05D004381 ORTHO05D005200 1.1e-49 201.1 132 77.3
Cre03.g189550 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.4e-47 194.1 300 44.7
Psat5g287120 Pisum sativum HOM05D004381 ORTHO05D005200 2.3e-42 176.8 97 91.8
TPR.G35036 Trifolium pratense HOM05D004381 ORTHO05D005200 3.9e-42 176.0 106 84.0
Oeu052046.2 Olea europaea HOM05D004381 ORTHO05D005200 7.0e-39 165.2 90 90.0
Hma1.2p1_0118F.1_g056480 Hydrangea macrophylla HOM05D004381 ORTHO05D005200 2.7e-35 153.3 84 89.3
TWI34G1572 Tripterygium wilfordii HOM05D004381 ORTHO05D005200 2.3e-34 150.2 152 56.6
Rhsim13G0223400 Rhododendron simsii HOM05D004381 ORTHO05D005200 2.2e-29 133.7 80 80.0
Gohir.D11G292000 Gossypium hirsutum HOM05D004381 ORTHO05D005200 3.2e-28 129.8 74 85.1
Gorai.007G316100 Gossypium raimondii HOM05D004381 ORTHO05D005200 3.2e-28 129.8 74 85.1
unitig_26.g10132 Utricularia gibba HOM05D004381 ORTHO05D005200 2.7e-27 126.7 80 76.2
MCO07G525 Micromonas commoda HOM05D004381 ORTHO05D005200 2.0e-22 110.5 258 36.8
CBR_g19660 Chara braunii HOM05D004381 ORTHO05D005200 3.8e-21 106.3 158 46.2
CBR_g37790 Chara braunii HOM05D004381 ORTHO05D005200 6.1e-19 99.0 158 43.0
PRCOL_00002167 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 2.3e-18 97.1 156 40.4
CBR_g35021 Chara braunii HOM05D004381 ORTHO05D005200 4.0e-18 96.3 150 38.7
arahy.Tifrunner.gnm1.ann1.XL2GL1 Arachis hypogaea HOM05D004381 ORTHO05D005200 2.0e-17 94.0 71 84.5
Glyma.08G063100 Glycine max HOM05D004381 ORTHO05D005200 2.6e-17 93.6 57 75.4
arahy.Tifrunner.gnm1.ann1.9W75VL Arachis hypogaea HOM05D004381 ORTHO05D005200 4.4e-17 92.8 121 49.6
CBR_g37792 Chara braunii HOM05D004381 ORTHO05D005200 5.7e-17 92.4 160 39.4
MCO07G169 Micromonas commoda HOM05D004381 ORTHO05D005200 5.7e-17 92.4 157 41.4
arahy.Tifrunner.gnm1.ann1.0JWP28 Arachis hypogaea HOM05D004381 ORTHO05D005200 6.3e-16 89.0 71 77.5
Psat5g287160 Pisum sativum HOM05D004381 ORTHO05D005200 1.4e-15 87.8 74 67.6
Cre01.g066187 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.6e-14 84.3 155 34.8
MBI09_g41969_MAGBIO Magnolia biondii HOM05D004381 ORTHO05D005200 3.8e-13 79.7 46 84.8
arahy.Tifrunner.gnm1.ann1.W9WT0A Arachis hypogaea HOM05D000602 ORTHO05D011536 1.1e-12 78.2 46 78.3
arahy.Tifrunner.gnm1.ann1.T6H5I3 Arachis hypogaea HOM05D004381 ORTHO05D005200 3.3e-12 76.6 44 84.1
Cre12.g530350 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 7.3e-12 75.5 156 38.5
TPR.G33171 Trifolium pratense HOM05D004381 ORTHO05D005200 1.2e-11 74.7 43 83.7
PRCOL_00005627 Prasinoderma coloniale HOM05D004381 ORTHO05D005200 6.1e-11 72.4 268 30.6
Cre12.g530400 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 1.4e-10 71.2 333 27.0
Cre09.g392060 Chlamydomonas reinhardtii HOM05D004381 ORTHO05D005200 6.4e-08 62.4 140 41.4
TAR636G1592 Trochodendron aralioides HOM05D004381 ORTHO05D415991 2.0e-06 57.4 60 55.0


User provided reference genes

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