Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 3.7e-168 595.5 493 100.0
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 3.3e-23 114.0 161 50.9
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 1.1e-21 109.0 200 42.5
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 1.5e-20 105.1 159 47.8
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.5e-20 105.1 163 47.9
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.6e-20 104.4 163 47.9
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 7.6e-20 102.8 143 47.6
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 1.3e-19 102.1 163 44.2
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.7e-19 101.7 154 47.4
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.7e-19 100.5 189 43.9
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 6.4e-19 99.8 144 52.1
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 6.4e-19 99.8 156 46.2
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 8.3e-19 99.4 142 49.3
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.1e-18 99.0 189 44.4
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.1e-18 99.0 141 47.5
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.1e-18 99.0 104 60.6
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.4e-18 96.7 144 51.4
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 5.4e-18 96.7 140 50.7
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 7.1e-18 96.3 142 47.9
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.2e-17 95.5 103 57.3
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 1.6e-17 95.1 163 46.0
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 1.6e-17 95.1 156 50.0
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 4.6e-17 93.6 122 54.9
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 7.8e-17 92.8 102 55.9
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.3e-16 92.0 136 45.6
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.3e-16 91.3 161 42.9
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 2.3e-16 91.3 140 45.7
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 2.3e-16 91.3 142 47.2
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 3.0e-16 90.9 170 41.8
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 3.0e-16 90.9 151 41.7
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 3.9e-16 90.5 102 58.8
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 6.6e-16 89.7 167 44.3
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 8.6e-16 89.4 110 59.1
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.5e-15 88.6 158 42.4
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 1.5e-15 88.6 114 54.4
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 2.5e-15 87.8 133 49.6
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 7.3e-15 86.3 143 44.1
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.2e-14 85.5 102 56.9
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.6e-14 85.1 168 40.5
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.6e-14 85.1 176 40.3
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 2.1e-14 84.7 158 39.9
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 2.1e-14 84.7 161 41.0
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 2.8e-14 84.3 175 39.4
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 2.8e-14 84.3 162 38.3
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 2.8e-14 84.3 144 47.2
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 3.6e-14 84.0 170 37.1
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.6e-14 84.0 137 44.5
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 4.7e-14 83.6 183 40.4
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 4.7e-14 83.6 103 56.3
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 6.2e-14 83.2 101 51.5
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 6.2e-14 83.2 134 48.5
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 8.1e-14 82.8 140 43.6
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.1e-13 82.4 183 39.9
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.4e-13 82.0 173 39.9
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 1.4e-13 82.0 175 40.0
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.4e-13 82.0 178 34.8
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 1.4e-13 82.0 143 45.5
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 1.8e-13 81.6 127 48.0
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.8e-13 81.6 151 43.0
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.8e-13 81.6 140 44.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 2.4e-13 81.3 175 35.4
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 2.4e-13 81.3 175 35.4
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 2.4e-13 81.3 148 44.6
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.4e-13 81.3 124 46.0
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 3.1e-13 80.9 133 44.4
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 3.1e-13 80.9 103 55.3
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 3.1e-13 80.9 116 50.0
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 5.2e-13 80.1 129 43.4
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 5.2e-13 80.1 121 49.6
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 5.2e-13 80.1 137 44.5
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 5.2e-13 80.1 137 44.5
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.2e-13 80.1 184 38.0
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.2e-13 80.1 184 38.0
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 6.8e-13 79.7 113 48.7
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 6.8e-13 79.7 176 36.9
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 8.9e-13 79.3 159 39.6
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 8.9e-13 79.3 98 54.1
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 1.2e-12 79.0 79 54.4
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.2e-12 79.0 185 36.8
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 1.5e-12 78.6 186 38.7
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 1.5e-12 78.6 113 46.9
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 2.0e-12 78.2 171 38.0
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 2.0e-12 78.2 147 44.2
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 2.6e-12 77.8 138 42.0
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.4e-12 77.4 145 43.4
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.4e-12 77.4 147 42.9
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 3.4e-12 77.4 112 51.8
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 4.4e-12 77.0 102 49.0
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 7.6e-12 76.3 164 39.6
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 9.9e-12 75.9 174 34.5
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.9e-12 75.9 152 42.8
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 1.3e-11 75.5 133 43.6
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.7e-11 75.1 140 40.7
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 2.2e-11 74.7 160 39.4
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 2.2e-11 74.7 171 37.4
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.2e-11 74.7 89 51.7
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 2.2e-11 74.7 100 49.0
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.2e-11 74.7 187 35.8
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 2.9e-11 74.3 178 37.6
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 3.8e-11 73.9 183 35.5
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 4.9e-11 73.6 143 41.3
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 6.4e-11 73.2 128 45.3
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 6.4e-11 73.2 150 41.3
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 8.4e-11 72.8 196 35.7
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.4e-10 72.0 102 47.1
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 1.4e-10 72.0 112 48.2
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 1.4e-10 72.0 164 38.4
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-10 71.6 52 69.2
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-10 71.6 52 69.2
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 1.9e-10 71.6 52 69.2
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 2.4e-10 71.2 53 67.9
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 2.4e-10 71.2 136 39.7
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 3.2e-10 70.9 140 39.3
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 4.2e-10 70.5 175 38.3
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 4.2e-10 70.5 175 38.3
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 5.4e-10 70.1 136 39.7
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 7.1e-10 69.7 181 37.0
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 9.3e-10 69.3 189 34.4
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 9.3e-10 69.3 139 36.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-09 68.9 144 36.8
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 1.2e-09 68.9 144 36.8
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 1.2e-09 68.9 141 41.8
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.2e-09 68.9 164 40.2
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 2.7e-09 67.8 148 37.8
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.5e-09 67.4 105 46.7
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 7.8e-09 66.2 120 43.3
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.8e-09 66.2 147 40.1
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 7.8e-09 66.2 198 33.8
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 7.8e-09 66.2 139 38.8
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.0e-08 65.9 183 36.6
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.3e-08 65.5 160 38.8
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 2.3e-08 64.7 134 36.6
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 2.3e-08 64.7 129 41.9
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 5.1e-08 63.5 125 40.0
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 8.7e-08 62.8 129 42.6
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 1.5e-07 62.0 167 32.3
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 1.9e-07 61.6 103 43.7
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 1.9e-07 61.6 140 38.6
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 2.5e-07 61.2 136 35.3
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 3.3e-07 60.8 95 42.1
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 3.3e-07 60.8 36 75.0
Pp3c2_18130 Physcomitrium patens HOM05D027683 ORTHO05D003557 3.3e-07 60.8 82 43.9
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 4.3e-07 60.5 37 75.7
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 5.6e-07 60.1 78 50.0
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 9.6e-07 59.3 44 68.2
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 1.3e-06 58.9 78 44.9
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 1.3e-06 58.9 194 31.4
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.3e-06 58.9 93 45.2
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 1.6e-06 58.5 98 41.8
PSO675G1109 Papaver somniferum HOM05D018639 ORTHO05D037265 1.6e-06 58.5 139 34.5
SEGI_05410 Sequoiadendron giganteum HOM05D027683 ORTHO05D018353 1.6e-06 58.5 37 73.0
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 2.1e-06 58.2 137 37.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.8e-06 57.0 47 59.6
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 4.8e-06 57.0 35 71.4
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 6.2e-06 56.6 144 32.6
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 6.2e-06 56.6 36 72.2
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 6.2e-06 56.6 36 72.2
PSO017G4482 Papaver somniferum HOM05D018639 ORTHO05D037265 8.1e-06 56.2 139 33.8


User provided reference genes

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