Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 3170.9 1720 100.0
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2513.8 1730 74.9
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2508.8 1727 75.0
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2503.0 1728 76.2
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2495.7 1725 75.5
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2493.8 1721 73.7
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2493.4 1729 74.5
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2483.8 1732 75.3
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2468.7 1729 74.8
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2468.0 1728 74.7
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2443.3 1727 73.4
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2442.9 1729 74.4
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2436.8 1726 72.5
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2431.8 1726 73.0
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2427.5 1729 73.9
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2426.4 1730 72.8
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2422.9 1704 72.8
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2418.3 1729 72.6
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2415.6 1729 73.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2414.4 1730 71.7
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2399.0 1729 73.8
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2394.0 1729 70.6
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2390.1 1726 72.4
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2378.2 1729 73.5
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2375.9 1736 71.4
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2375.1 1723 71.3
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2374.4 1730 70.4
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2372.0 1731 73.0
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2371.3 1747 70.6
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2354.7 1749 70.4
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2354.3 1723 71.2
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2353.9 1787 72.2
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 2345.5 1732 70.5
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2337.0 1722 72.5
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 2329.3 1732 69.6
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2314.7 1742 68.0
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2304.6 1723 69.6
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2302.7 1752 67.5
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2295.8 1691 70.1
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2293.8 1491 76.1
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2286.5 1691 70.9
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2271.5 1748 67.0
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2271.1 1778 68.8
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2269.6 1706 67.5
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2269.2 1708 68.5
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2262.6 1719 68.8
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2259.6 1726 67.7
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2258.4 1724 66.9
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2251.9 1726 66.7
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2244.9 1758 65.4
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2244.2 1731 68.6
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2243.8 1767 68.1
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2233.0 1742 66.5
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 2231.8 1865 65.4
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2226.8 1766 65.1
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2218.7 1708 66.7
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2217.2 1683 67.8
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2216.0 1481 73.5
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2209.9 1722 67.1
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2207.9 1707 67.3
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2206.8 1723 66.7
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2205.6 1489 72.9
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2201.4 1719 68.0
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2191.0 1724 66.9
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2188.7 1780 65.0
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2186.0 1414 75.7
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2185.6 1757 64.7
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2178.7 1726 66.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2177.9 1724 67.1
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2174.4 1710 66.2
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2173.7 1733 65.6
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2173.7 1722 65.8
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2145.5 1714 64.2
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2111.6 1491 70.4
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2109.0 1684 66.7
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2098.9 1764 62.1
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2085.1 1759 63.6
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2065.0 1633 65.3
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2060.0 2155 54.7
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2057.0 1737 63.4
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 2053.9 1729 64.8
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2041.2 1722 63.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 2039.2 1296 74.9
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 2019.6 1292 74.4
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 2016.5 1745 62.3
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1976.8 1496 65.2
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1961.8 1160 81.5
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1953.7 1472 65.5
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1931.4 1460 67.8
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1902.5 1705 59.4
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1843.6 1836 56.0
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1752.3 1499 58.8
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1745.3 1458 67.0
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1738.8 1743 58.7
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1711.8 1484 57.8
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1704.1 1509 55.5
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1696.4 1509 57.2
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1655.6 1477 56.1
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1643.6 1045 75.8
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1528.1 936 78.6
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1517.3 1084 66.7
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1430.6 1147 67.9
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1367.4 1147 61.2
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1360.5 890 77.3
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1350.1 943 73.0
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1163.3 910 63.6
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1118.6 942 65.3
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 3.9e-297 1025.8 741 67.9
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.7e-292 1010.4 616 78.9
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 4.9e-268 929.1 681 64.3
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 1.0e-260 904.8 601 71.9
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 9.7e-256 888.3 552 79.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 8.2e-247 858.6 690 67.0
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.7e-231 807.7 1595 35.8
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 3.6e-202 710.3 847 41.4
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 1.8e-193 681.4 429 75.5
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 3.1e-161 574.3 376 74.5
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 2.9e-159 567.8 328 83.8
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 3.8e-151 540.8 604 59.6
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.3e-135 489.2 633 61.0
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 9.4e-126 456.4 904 33.1
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 2.4e-121 441.8 698 38.0
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 3.8e-111 407.9 336 65.5
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 1.2e-109 402.9 241 80.5
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 3.6e-109 401.4 429 44.8
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 5.7e-107 394.0 246 72.0
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 7.7e-104 383.6 312 69.6
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.9e-88 330.9 214 68.2
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.2e-82 312.4 190 81.6
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.4e-73 282.3 176 72.2
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 1.5e-70 273.1 402 47.0
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 1.1e-65 256.9 176 68.2
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 9.3e-57 227.3 152 70.4
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 3.4e-51 208.8 203 47.8
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 1.6e-48 199.9 115 85.2
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 2.1e-48 199.5 445 45.6
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 1.6e-45 189.9 130 66.2
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.8e-44 186.4 130 63.1
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 2.7e-40 172.6 99 84.8
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 1.0e-34 154.1 169 50.9
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 1.9e-30 139.8 206 44.7
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 1.9e-30 139.8 123 56.1
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.7e-26 126.7 104 60.6
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 3.8e-26 125.6 69 82.6
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 6.5e-26 124.8 73 84.9
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 2.1e-24 119.8 63 93.7
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 3.6e-24 119.0 93 65.6
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 3.9e-23 115.5 208 37.0
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 1.9e-22 113.2 61 80.3
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 2.5e-22 112.8 87 64.4
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 1.7e-21 110.2 75 78.7
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 1.7e-18 100.1 71 62.0
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 6.5e-18 98.2 98 46.9
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 1.4e-17 97.1 57 84.2
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 1.4e-15 90.5 298 38.6
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 1.8e-15 90.1 58 67.2
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 3.9e-15 89.0 51 78.4
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 6.7e-15 88.2 83 57.8
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.3e-13 84.0 94 50.0
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 2.8e-13 82.8 50 82.0
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 2.4e-12 79.7 52 75.0
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 1.0e-10 74.3 95 41.1
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 5.0e-10 72.0 293 32.1
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.1e-09 70.9 44 65.9
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 2.5e-09 69.7 73 49.3
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.2e-08 67.4 111 42.3
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 6.1e-08 65.1 35 82.9
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 8.0e-08 64.7 57 54.4
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 1.0e-07 64.3 126 34.1
HanXRQChr13g0412901 Helianthus annuus HOM05D000041 ORTHO05D000452 1.1e-06 60.8 228 27.2
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 2.6e-06 59.7 166 27.7
Actinidia04622 Actinidia chinensis HOM05D004072 ORTHO05D019491 4.4e-06 58.9 44 59.1
CBR_g34927 Chara braunii HOM05D000019 ORTHO05D000002 5.7e-06 58.5 101 30.7
Actinidia36003 Actinidia chinensis HOM05D004072 ORTHO05D021063 7.4e-06 58.2 66 53.0
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 7.4e-06 58.2 49 63.3
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 9.7e-06 57.8 68 44.1


User provided reference genes

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