Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 5.5e-151 537.7 296 100.0
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 9.4e-50 201.4 301 47.2
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 9.1e-45 184.9 299 43.8
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 5.9e-44 182.2 303 42.9
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 5.5e-42 175.6 307 44.6
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.6e-41 174.1 307 44.3
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 2.7e-41 173.3 298 41.9
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 1.8e-40 170.6 328 41.2
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 5.2e-40 169.1 302 42.1
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 1.3e-38 164.5 298 41.6
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 6.3e-38 162.2 304 41.1
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 1.1e-37 161.4 300 40.7
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 3.1e-37 159.8 296 40.5
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 9.1e-37 158.3 300 41.3
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 2.0e-36 157.1 303 41.3
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 4.5e-36 156.0 255 41.6
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 4.5e-36 156.0 305 39.3
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 2.9e-35 153.3 295 40.7
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 8.5e-35 151.8 303 39.6
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.1e-34 151.4 277 41.5
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 4.2e-34 149.4 295 40.3
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 7.2e-34 148.7 296 38.2
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 6.1e-33 145.6 296 40.9
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 1.0e-32 144.8 310 36.1
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.0e-32 144.8 303 40.3
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.4e-32 144.4 302 38.1
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 5.2e-32 142.5 306 40.5
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 5.2e-32 142.5 304 40.5
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 2.0e-31 140.6 304 39.5
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 2.6e-31 140.2 294 38.8
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 3.3e-31 139.8 297 38.0
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 1.7e-30 137.5 306 38.2
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 1.7e-30 137.5 303 37.6
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 4.1e-29 132.9 302 38.7
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.2e-28 131.3 301 38.2
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 5.9e-28 129.0 315 34.9
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 1.7e-27 127.5 298 35.6
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 2.2e-27 127.1 297 35.0
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.2e-27 127.1 292 37.0
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.8e-27 126.3 309 37.5
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 5.0e-27 125.9 302 37.1
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 1.5e-26 124.4 308 36.4
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 1.9e-26 124.0 313 34.5
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 1.9e-26 124.0 305 33.8
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 7.2e-26 122.1 305 34.8
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 9.4e-26 121.7 275 40.7
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 2.1e-25 120.6 292 37.3
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 2.7e-25 120.2 301 35.5
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 3.6e-25 119.8 301 33.6
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 4.7e-25 119.4 304 35.5
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 6.1e-25 119.0 303 35.3
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 8.0e-25 118.6 293 36.2
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.0e-24 118.2 293 35.8
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 3.0e-24 116.7 299 33.8
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 4.0e-24 116.3 306 33.7
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 4.0e-24 116.3 297 35.7
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 6.8e-24 115.5 281 35.6
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 8.8e-24 115.2 298 36.6
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 8.8e-24 115.2 298 36.6
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.5e-23 114.4 302 31.8
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 2.0e-23 114.0 298 35.9
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 2.0e-23 114.0 304 33.9
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 4.4e-23 112.8 302 34.1
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 5.7e-23 112.5 305 35.1
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 5.7e-23 112.5 309 32.4
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 5.7e-23 112.5 294 32.7
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 7.5e-23 112.1 301 36.2
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.7e-22 110.9 296 36.5
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.2e-22 110.5 296 32.1
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 2.8e-22 110.2 304 32.9
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 4.8e-22 109.4 303 33.0
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 6.3e-22 109.0 305 33.1
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 8.3e-22 108.6 304 31.6
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.4e-21 107.8 293 34.1
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.4e-21 107.8 295 32.2
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.4e-21 107.8 297 32.7
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.4e-21 107.8 297 32.7
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.4e-21 107.1 302 33.1
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 5.4e-21 105.9 296 33.4
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 9.1e-21 105.1 293 34.1
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.6e-20 104.4 296 35.5
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.7e-20 103.6 294 33.3
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 7.7e-20 102.1 291 30.6
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 1.0e-19 101.7 344 31.7
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 1.0e-19 101.7 297 32.3
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 1.3e-19 101.3 231 34.6
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 2.3e-19 100.5 299 31.4
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 2.9e-19 100.1 172 39.0
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 6.5e-19 99.0 294 31.3
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 6.5e-19 99.0 300 31.0
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 1.9e-18 97.4 302 32.1
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 3.2e-18 96.7 348 31.6
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 5.5e-18 95.9 276 34.4
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 5.5e-18 95.9 294 29.9
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 7.2e-18 95.5 299 30.1
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 9.5e-18 95.1 293 32.4
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 1.2e-17 94.7 296 32.8
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.1e-17 94.0 297 30.3
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.7e-17 92.8 303 30.0
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 4.7e-17 92.8 348 31.3
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.0e-16 91.7 294 31.3
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 1.4e-16 91.3 295 30.2
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 4.0e-16 89.7 297 32.0
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 1.5e-15 87.8 304 28.0
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 2.0e-15 87.4 307 29.0
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 3.4e-15 86.7 308 30.8
Potri.006G244600 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.7e-15 85.9 264 33.0
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 2.2e-14 84.0 304 30.6
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 4.9e-14 82.8 291 28.2
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 6.3e-14 82.4 130 40.8
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.3e-14 82.4 291 28.2
Sabra06G0191500 Salix brachista HOM05D003500 ORTHO05D003919 6.3e-14 82.4 134 47.0
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 1.1e-13 81.6 304 26.6
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 1.4e-13 81.3 303 28.4
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.8e-13 80.9 289 28.0
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 2.4e-13 80.5 200 34.0
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 2.4e-13 80.5 304 28.3
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 4.1e-13 79.7 194 34.0
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 4.1e-13 79.7 305 29.8
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 4.1e-13 79.7 299 30.1
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 5.4e-13 79.3 200 35.0
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 5.4e-13 79.3 244 30.3
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 9.2e-13 78.6 302 28.8
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 9.2e-13 78.6 305 29.5
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 2.7e-12 77.0 306 30.7
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 4.5e-12 76.3 302 28.8
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 5.9e-12 75.9 149 35.6
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 1.3e-11 74.7 299 29.4
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 1.7e-11 74.3 314 27.7
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 2.3e-11 73.9 273 28.2
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 2.9e-11 73.6 314 27.7
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 3.3e-10 70.1 292 28.8
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 3.3e-10 70.1 298 28.2
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 3.3e-10 70.1 291 27.5
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.3e-10 69.7 299 27.8
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 5.6e-10 69.3 304 28.9
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 5.6e-10 69.3 306 29.4
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 5.6e-10 69.3 321 27.4
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 5.6e-10 69.3 294 29.9
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 7.3e-10 68.9 291 28.5
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 7.3e-10 68.9 228 28.9
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 2.1e-09 67.4 301 26.2
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 2.8e-09 67.0 160 31.2
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 3.6e-09 66.6 290 29.3
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 4.7e-09 66.2 290 24.8
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 1.0e-08 65.1 223 30.9
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 1.4e-08 64.7 294 27.6
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 1.4e-08 64.7 285 26.0
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 1.8e-08 64.3 165 31.5
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.8e-08 64.3 264 28.0
Lsat_1_v5_gn_6_63900 Lactuca sativa HOM05D003500 ORTHO05D003919 1.8e-08 64.3 271 29.2
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 2.3e-08 63.9 291 26.5
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 3.0e-08 63.5 293 26.6
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 3.0e-08 63.5 288 29.5
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 4.0e-08 63.2 306 27.8
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 5.2e-08 62.8 310 27.1
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 6.8e-08 62.4 135 31.9
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.2e-07 61.6 291 26.1
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 2.0e-07 60.8 289 26.0
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.0e-07 60.8 289 27.0
Manes.11G047100 Manihot esculenta HOM05D003500 ORTHO05D003919 2.0e-07 60.8 297 26.6
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 2.6e-07 60.5 293 26.3
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 3.4e-07 60.1 289 26.0
Gohir.A02G121400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 5.7e-07 59.3 306 24.2
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 7.5e-07 58.9 129 32.6
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 9.8e-07 58.5 129 32.6
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 9.8e-07 58.5 189 28.0
MELO3C012963.2 Cucumis melo HOM05D003500 ORTHO05D003919 1.7e-06 57.8 245 31.4
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 2.2e-06 57.4 290 26.6
Gohir.D03G063800 Gossypium hirsutum HOM05D003500 ORTHO05D003919 2.9e-06 57.0 306 24.2
Solyc03g120180.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 2.9e-06 57.0 159 28.9
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 3.7e-06 56.6 292 27.7
Gorai.002G059400 Gossypium raimondii HOM05D003500 ORTHO05D003919 4.9e-06 56.2 305 23.3
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 4.9e-06 56.2 291 25.8
Sabra03G0031200 Salix brachista HOM05D003500 ORTHO05D003919 8.3e-06 55.5 78 38.5


User provided reference genes

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