Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1194 Cannabis sativa HOM05D003782 ORTHO05D004361 0.0e+00 1643.2 889 100.0
Cfa000411 Carpinus fangiana HOM05D003782 ORTHO05D004361 1.4e-274 949.9 917 61.4
Haze_06504 Corylus avellana HOM05D003782 ORTHO05D004361 2.1e-270 936.0 905 61.0
QL05p039400 Quercus lobata HOM05D003782 ORTHO05D004361 9.1e-266 920.6 927 60.7
CiPaw.09G056900 Carya illinoinensis HOM05D003782 ORTHO05D004361 3.0e-261 905.6 920 61.0
GSVIVG01006449001 Vitis vinifera HOM05D003782 ORTHO05D004361 2.6e-257 892.5 933 58.2
Prupe.4G043300 Prunus persica HOM05D003782 ORTHO05D004361 6.5e-256 887.9 943 59.3
CiPaw.10G046700 Carya illinoinensis HOM05D003782 ORTHO05D004361 1.3e-251 873.6 787 64.4
MD05G1316600 Malus domestica HOM05D003782 ORTHO05D004361 5.3e-250 868.2 934 58.0
MD10G1297100 Malus domestica HOM05D003782 ORTHO05D004361 2.0e-249 866.3 939 58.8
Hma1.2p1_0881F.1_g231940 Hydrangea macrophylla HOM05D003782 ORTHO05D004361 3.2e-247 859.0 920 57.9
Manes.17G043000 Manihot esculenta HOM05D003782 ORTHO05D004361 8.8e-245 850.9 931 56.6
Potri.011G049300 Populus trichocarpa HOM05D003782 ORTHO05D004361 5.7e-244 848.2 928 56.2
Dinv07533 Davidia involucrata HOM05D003782 ORTHO05D004361 1.3e-243 847.0 905 58.5
Manes.16G025200 Manihot esculenta HOM05D003782 ORTHO05D004361 1.3e-243 847.0 925 56.4
Potri.004G039900 Populus trichocarpa HOM05D003782 ORTHO05D004361 2.8e-243 845.9 937 55.7
Sabra11G0033700 Salix brachista HOM05D003782 ORTHO05D004361 9.1e-242 840.9 935 55.0
CSS0005863 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 4.5e-241 838.6 913 56.7
Glyma.13G181800 Glycine max HOM05D003782 ORTHO05D004361 4.2e-239 832.0 913 57.4
RcHm_v2.0_Chr5g0007891 Rosa chinensis HOM05D003782 ORTHO05D004361 1.5e-236 823.5 941 56.3
Actinidia05612 Actinidia chinensis HOM05D003782 ORTHO05D004361 9.8e-236 820.8 917 55.3
FAN11G2511 Fragaria x ananassa HOM05D003782 ORTHO05D004361 3.7e-235 818.9 976 54.1
Atru.chr10.1947 Acer truncatum HOM05D003782 ORTHO05D004361 2.4e-234 816.2 947 55.1
Glyma.07G194500 Glycine max HOM05D003782 ORTHO05D004361 2.4e-234 816.2 913 56.4
FvH4_3g04800 Fragaria vesca HOM05D003782 ORTHO05D004361 3.2e-234 815.8 972 53.8
ClCG03G005890 Citrullus lanatus HOM05D003782 ORTHO05D004361 5.9e-233 811.6 938 55.1
Ciclev10014178m.g Citrus clementina HOM05D003782 ORTHO05D004361 3.9e-232 808.9 967 53.9
FAN25G2149 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.9e-231 806.6 974 53.2
Thecc.06G191300 Theobroma cacao HOM05D003782 ORTHO05D004361 2.5e-231 806.2 936 55.3
FAN16G0824 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.1e-230 803.1 976 53.8
FAN21G1192 Fragaria x ananassa HOM05D003782 ORTHO05D004361 2.8e-230 802.7 972 53.2
Lalb_Chr05g0218361 Lupinus albus HOM05D003782 ORTHO05D004361 8.0e-230 801.2 922 55.2
CsaV3_1G012120 Cucumis sativus L. HOM05D003782 ORTHO05D004361 1.8e-229 800.0 918 55.6
CSS0007425 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 3.1e-229 799.3 890 56.1
arahy.Tifrunner.gnm1.ann1.2GZF7Z Arachis hypogaea HOM05D003782 ORTHO05D004361 4.0e-229 798.9 925 54.3
Sed0005800 Sechium edule HOM05D003782 ORTHO05D004361 4.0e-229 798.9 954 52.7
Lj4g0027811 Lotus japonicus HOM05D003782 ORTHO05D004361 2.0e-228 796.6 963 53.4
arahy.Tifrunner.gnm1.ann1.1A97AW Arachis hypogaea HOM05D003782 ORTHO05D004361 7.5e-228 794.7 925 54.1
Phvul.002G226800 Phaseolus vulgaris HOM05D003782 ORTHO05D004361 1.7e-227 793.5 918 54.5
VMungo0251G3691 Vigna mungo HOM05D003782 ORTHO05D004361 3.0e-224 782.7 904 54.3
TWI38G1173 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 2.5e-223 779.6 914 53.7
Duzib160G0524 Durio zibethinus HOM05D003782 ORTHO05D004361 2.8e-222 776.2 932 54.7
Gohir.D06G130600 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.3e-219 767.3 926 53.6
Nitab4.5_0011233g0010 Nicotiana tabacum HOM05D003782 ORTHO05D004361 1.3e-219 767.3 957 51.2
Dinv40534 Davidia involucrata HOM05D003782 ORTHO05D004361 3.7e-219 765.8 724 62.3
TPR.G12054 Trifolium pratense HOM05D003782 ORTHO05D004361 2.4e-218 763.1 1001 50.1
Sopen02g023410 Solanum pennellii HOM05D003782 ORTHO05D004361 3.2e-218 762.7 965 51.7
PGR042G3934 Punica granatum HOM05D003782 ORTHO05D004361 2.7e-217 759.6 928 52.8
Medtr4g089015 Medicago truncatula HOM05D003782 ORTHO05D004361 1.3e-216 757.3 1003 49.8
TAR624G0538 Trochodendron aralioides HOM05D003782 ORTHO05D003724 1.3e-216 757.3 805 57.5
CAN.G1627.12 Capsicum annuum HOM05D003782 ORTHO05D004361 1.7e-216 756.9 953 51.7
vmacro03847 Vaccinium macrocarpon HOM05D003782 ORTHO05D004361 2.3e-216 756.5 994 49.9
Solyc02g078560.4 Solanum lycopersicum HOM05D003782 ORTHO05D004361 6.6e-216 755.0 791 57.6
Peaxi162Scf00379g00065 Petunia axillaris HOM05D003782 ORTHO05D004361 2.5e-215 753.1 898 53.1
Lalb_Chr09g0327561 Lupinus albus HOM05D003782 ORTHO05D004361 5.6e-215 751.9 920 52.9
Gohir.A06G209800 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.1e-213 747.7 927 52.1
Sc05g0007840 Simmondsia chinensis HOM05D003782 ORTHO05D004361 3.1e-213 746.1 989 50.7
Gohir.A06G125300 Gossypium hirsutum HOM05D003782 ORTHO05D004361 5.2e-213 745.3 911 52.5
MBI17_g03751_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 1.7e-211 740.3 933 51.8
Psat7g113440 Pisum sativum HOM05D003782 ORTHO05D004361 3.2e-210 736.1 1037 47.8
Cc02_g13030 Coffea canephora HOM05D003782 ORTHO05D004361 5.4e-210 735.3 914 49.7
Gorai.010G255000 Gossypium raimondii HOM05D003782 ORTHO05D004361 5.4e-210 735.3 927 51.7
Eucgr.E03352 Eucalyptus grandis HOM05D003782 ORTHO05D004361 1.2e-209 734.2 934 52.4
Gohir.D06G211200 Gossypium hirsutum HOM05D003782 ORTHO05D004361 1.6e-209 733.8 927 51.6
MELO3C002586.2 Cucumis melo HOM05D003782 ORTHO05D004361 1.0e-208 731.1 984 51.0
COL.COLO4_31507 Corchorus olitorius HOM05D003782 ORTHO05D004361 2.3e-208 729.9 1039 48.9
RhsimUnG0044200 Rhododendron simsii HOM05D003782 ORTHO05D004361 1.6e-206 723.8 1105 45.3
Ca_18527_v3 Cicer arietinum L. HOM05D003782 ORTHO05D004361 2.8e-206 723.0 902 52.7
DCAR_008048 Daucus carota HOM05D003782 ORTHO05D004361 1.2e-204 717.6 785 54.0
Aqoxy4G01073 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 1.7e-203 713.8 948 49.3
Migut.H01508 Erythranthe guttata HOM05D003782 ORTHO05D004361 3.8e-203 712.6 777 55.6
Lj1C1208G1 Lonicera japonica HOM05D003782 ORTHO05D004361 1.7e-200 703.7 931 50.9
arahy.Tifrunner.gnm1.ann1.HPML60 Arachis hypogaea HOM05D003782 ORTHO05D004361 9.6e-199 698.0 857 50.6
Gorai.010G152400 Gossypium raimondii HOM05D003782 ORTHO05D004361 2.1e-198 696.8 924 50.5
MSTRG.14684 Avicennia marina HOM05D003782 ORTHO05D004361 2.4e-197 693.3 777 54.1
Nitab4.5_0003668g0120 Nicotiana tabacum HOM05D003782 ORTHO05D004361 3.4e-196 689.5 954 47.6
arahy.Tifrunner.gnm1.ann1.AS4EHM Arachis hypogaea HOM05D003782 ORTHO05D004361 5.8e-196 688.7 859 50.1
Lsat_1_v5_gn_7_19080 Lactuca sativa HOM05D003782 ORTHO05D004361 4.9e-195 685.6 900 49.4
CDE02G2556 Ceratophyllum demersum HOM05D003782 ORTHO05D004361 6.4e-195 685.3 914 49.7
BraA06t23977Z Brassica rapa HOM05D003782 ORTHO05D004361 8.4e-195 684.9 912 49.0
A06p07760 Brassica napus HOM05D003782 ORTHO05D004361 2.4e-194 683.3 912 48.8
HanXRQChr04g0124181 Helianthus annuus HOM05D003782 ORTHO05D004361 9.3e-194 681.4 914 48.1
C05p09350 Brassica napus HOM05D003782 ORTHO05D004361 6.6e-192 675.2 913 48.6
Sed0026382 Sechium edule HOM05D003782 ORTHO05D004361 3.3e-191 672.9 909 48.6
EL10Ac8g20337 Beta vulgaris HOM05D003782 ORTHO05D004361 4.3e-191 672.5 809 52.5
CARHR011250 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.3e-190 671.0 920 47.4
HanXRQChr08g0209481 Helianthus annuus HOM05D003782 ORTHO05D004361 2.1e-190 670.2 923 48.0
AUR62014785 Chenopodium quinoa HOM05D003782 ORTHO05D004361 2.8e-190 669.8 835 51.4
Oeu014694.1 Olea europaea HOM05D003782 ORTHO05D004361 2.8e-190 669.8 780 53.1
BcaC05g24980 Brassica carinata HOM05D003782 ORTHO05D004361 4.8e-190 669.1 790 52.7
SGA_v2.0_scaffold49G18282 Striga asiatica HOM05D003782 ORTHO05D004361 4.8e-190 669.1 803 51.2
BolC5t29675H Brassica oleracea HOM05D003782 ORTHO05D004361 2.4e-189 666.8 941 47.6
Hund23698 Selenicereus undatus HOM05D003782 ORTHO05D004361 4.0e-189 666.0 897 48.8
PSO210G1870 Papaver somniferum HOM05D003782 ORTHO05D004361 3.4e-188 662.9 1024 45.3
SalBow8G2382 Salvia bowleyana HOM05D003782 ORTHO05D004361 9.9e-188 661.4 798 52.4
AUR62016973 Chenopodium quinoa HOM05D003782 ORTHO05D004361 1.3e-187 661.0 800 52.1
Carub.0001s1062 Capsella rubella HOM05D003782 ORTHO05D004361 2.9e-187 659.8 930 47.2
Sp1g09750 Schrenkiella parvula HOM05D003782 ORTHO05D004361 6.4e-187 658.7 930 47.3
Lj6g0013812 Lotus japonicus HOM05D003782 ORTHO05D004361 8.4e-187 658.3 783 51.1
AL1G22040 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 2.4e-186 656.8 920 46.7
Sp2g03490 Schrenkiella parvula HOM05D003782 ORTHO05D004361 4.6e-185 652.5 913 46.8
C08p48360 Brassica napus HOM05D003782 ORTHO05D004361 7.9e-185 651.7 908 47.6
BolC8t52375H Brassica oleracea HOM05D003782 ORTHO05D004361 7.9e-185 651.7 908 47.6
Aa31LG1G3850 Aethionema arabicum HOM05D003782 ORTHO05D004361 3.3e-183 646.4 948 46.3
Ah.14g089260 Amaranthus hybridus HOM05D003782 ORTHO05D004361 7.4e-183 645.2 947 46.3
Thhalv10006765m.g Eutrema salsugineum HOM05D003782 ORTHO05D004361 9.6e-183 644.8 918 46.5
PSO832G0898 Papaver somniferum HOM05D003782 ORTHO05D004361 4.8e-182 642.5 1022 44.6
AT1G11060 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 1.4e-181 641.0 924 46.1
Sabra04G0024600 Salix brachista HOM05D003782 ORTHO05D004361 2.4e-181 640.2 809 51.3
BraA09t41812Z Brassica rapa HOM05D003782 ORTHO05D004361 4.9e-179 632.5 984 45.2
CARHR052160 Cardamine hirsuta HOM05D003782 ORTHO05D004361 8.4e-179 631.7 791 49.2
ATR0680G033 Amborella trichopoda HOM05D003782 ORTHO05D004361 3.2e-178 629.8 943 46.1
AT1G61030 Arabidopsis thaliana HOM05D003782 ORTHO05D004361 4.2e-178 629.4 797 48.8
A09p64830 Brassica napus HOM05D003782 ORTHO05D004361 2.7e-177 626.7 974 45.1
SalBow7G0271 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.0e-177 625.5 815 48.7
SalBow7G0940 Salvia bowleyana HOM05D003782 ORTHO05D004361 6.0e-177 625.5 815 48.7
AL2G15410 Arabidopsis lyrata HOM05D003782 ORTHO05D004361 8.7e-176 621.7 790 49.5
Carub.0002s0417 Capsella rubella HOM05D003782 ORTHO05D004361 3.3e-175 619.8 905 45.4
Lalb_Chr20g0122011 Lupinus albus HOM05D003782 ORTHO05D004361 1.2e-172 611.3 759 50.6
HPP92_014533 Vanilla planifolia HOM05D003782 ORTHO05D004361 1.2e-172 611.3 795 47.9
Aa31LG2G9560 Aethionema arabicum HOM05D003782 ORTHO05D004361 1.4e-170 604.4 897 44.8
BcaC07g41789 Brassica carinata HOM05D003782 ORTHO05D004361 1.3e-168 597.8 931 45.4
Os10g0497000 Oryza sativa ssp. japonica HOM05D003782 ORTHO05D004361 1.4e-157 561.2 814 45.0
Duzib192G0241 Durio zibethinus HOM05D003782 ORTHO05D004361 1.0e-155 555.1 938 44.1
Duzib235G1248 Durio zibethinus HOM05D003782 ORTHO05D004361 1.3e-155 554.7 930 44.8
Zm00001eb220930 Zea mays HOM05D003782 ORTHO05D004361 5.0e-155 552.7 782 44.0
Ah.09g235740 Amaranthus hybridus HOM05D003782 ORTHO05D004361 1.1e-151 541.6 951 42.9
unitig_26.g9369 Utricularia gibba HOM05D003782 ORTHO05D004361 5.9e-132 476.1 771 43.8
Migut.M01185 Erythranthe guttata HOM05D003782 ORTHO05D004361 1.0e-128 465.3 749 42.9
Mapoly0014s0099 Marchantia polymorpha HOM05D003782 ORTHO05D004361 5.9e-124 449.5 878 38.5
Pp3c9_20340 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.9e-115 420.2 796 37.8
Pp3c9_20349 Physcomitrium patens HOM05D003782 ORTHO05D004361 3.9e-115 420.2 796 37.8
Zm00001eb044640 Zea mays HOM05D003782 ORTHO05D004361 5.0e-107 393.3 672 39.4
SMO169G0190 Selaginella moellendorffii HOM05D003782 ORTHO05D004361 4.1e-101 373.6 764 36.9
Cpa.g.sc27.74 Carica papaya HOM05D003782 ORTHO05D004361 5.1e-99 366.7 381 58.3
ECA236G4595 Erigeron canadensis HOM05D003782 ORTHO05D004361 1.1e-98 365.5 531 47.3
Aqoxy6G00197 Aquilegia oxysepala HOM05D003782 ORTHO05D004361 6.0e-92 343.2 332 59.6
FAN07G0886 Fragaria x ananassa HOM05D003782 ORTHO05D004361 4.4e-87 327.0 287 63.4
Lj6g0001672 Lotus japonicus HOM05D003782 ORTHO05D004361 1.9e-77 295.0 320 56.9
CBR_g19729 Chara braunii HOM05D003782 ORTHO05D004361 4.8e-73 280.4 972 28.5
CSS0036804 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.5e-71 275.4 363 50.4
SEGI_34470 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 2.1e-65 255.0 250 60.0
SHI01818 Sapria himalayana HOM05D003782 ORTHO05D004361 1.1e-64 252.7 488 39.3
Oeu043706.1 Olea europaea HOM05D003782 ORTHO05D004361 1.4e-64 252.3 386 47.4
Lj6g0027699 Lotus japonicus HOM05D003782 ORTHO05D004361 2.6e-55 221.5 260 48.8
Sabra04G0024500 Salix brachista HOM05D003782 ORTHO05D004361 2.9e-46 191.4 139 73.4
Cpa.g.sc27.75 Carica papaya HOM05D003782 ORTHO05D004361 5.5e-37 160.6 476 32.1
SEGI_13110 Sequoiadendron giganteum HOM05D003782 ORTHO05D004361 5.7e-34 150.6 208 42.8
ECA236G3594 Erigeron canadensis HOM05D003782 ORTHO05D004361 2.2e-33 148.7 229 45.0
FAN28G2813 Fragaria x ananassa HOM05D003782 ORTHO05D004361 1.8e-32 145.6 92 80.4
BcaC05g24978 Brassica carinata HOM05D003782 ORTHO05D004361 1.6e-31 142.5 218 44.5
arahy.Tifrunner.gnm1.ann1.04J95Q Arachis hypogaea HOM05D003782 ORTHO05D004361 1.7e-30 139.0 111 60.4
Zm00001eb006190 Zea mays HOM05D003782 ORTHO05D004361 3.8e-30 137.9 157 45.9
TWI12G0412 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 4.7e-28 131.0 183 49.2
arahy.Tifrunner.gnm1.ann1.M5G8HU Arachis hypogaea HOM05D003782 ORTHO05D004361 4.4e-26 124.4 84 73.8
MD09G1213100 Malus domestica HOM05D003782 ORTHO05D004361 1.4e-24 119.4 73 76.7
TWI12G0828 Tripterygium wilfordii HOM05D003782 ORTHO05D004361 1.2e-23 116.3 164 48.8
arahy.Tifrunner.gnm1.ann1.S76ADD Arachis hypogaea HOM05D001687 ORTHO05D001608 1.7e-22 112.5 77 74.0
VMungo0251G1485 Vigna mungo HOM05D003782 ORTHO05D004361 8.0e-20 103.6 68 77.9
Zm00001eb335960 Zea mays HOM05D003782 ORTHO05D004361 8.0e-20 103.6 119 47.9
VMungo0331G2027 Vigna mungo HOM05D003782 ORTHO05D004361 1.4e-19 102.8 63 79.4
arahy.Tifrunner.gnm1.ann1.IMK82Y Arachis hypogaea HOM05D003782 ORTHO05D004361 2.3e-19 102.1 71 70.4
Zm00001eb432110 Zea mays HOM05D003782 ORTHO05D004361 2.3e-19 102.1 89 58.4
QL05p013418 Quercus lobata HOM05D003782 ORTHO05D004361 4.0e-19 101.3 57 89.5
arahy.Tifrunner.gnm1.ann1.R5EEB5 Arachis hypogaea HOM05D003782 ORTHO05D004361 9.8e-18 96.7 106 47.2
Zm00001eb179180 Zea mays HOM05D003782 ORTHO05D004361 9.8e-18 96.7 89 56.2
CSS0006007 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 1.0e-14 86.7 62 75.8
arahy.Tifrunner.gnm1.ann1.IG0W9M Arachis hypogaea HOM05D003782 ORTHO05D004361 2.9e-14 85.1 95 44.2
Nn1g04009 Nelumbo nucifera HOM05D003782 ORTHO05D004361 1.5e-13 82.8 76 57.9
TAR626G0244 Trochodendron aralioides HOM05D003782 ORTHO05D004361 1.5e-13 82.8 68 66.2
Glyma.04G160500 Glycine max HOM05D003782 ORTHO05D004361 4.2e-13 81.3 91 53.8
ATR0561G103 Amborella trichopoda HOM05D003782 ORTHO05D004361 1.6e-12 79.3 126 41.3
Zm00001eb208870 Zea mays HOM05D000229 ORTHO05D004361 1.2e-10 73.2 126 39.7
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.5e-10 72.8 44 84.1
Zm00001eb174580 Zea mays HOM05D003782 ORTHO05D004361 3.4e-10 71.6 68 52.9
CARHR034020 Cardamine hirsuta HOM05D003782 ORTHO05D004361 1.3e-09 69.7 96 46.9
SHI01816 Sapria himalayana HOM05D005377 ORTHO05D003034 1.7e-09 69.3 78 55.1
CSS0040150 Camellia sinensis var. sinensis HOM05D003782 ORTHO05D004361 5.4e-08 64.3 49 69.4
Zm00001eb032810 Zea mays HOM05D003782 ORTHO05D004361 2.0e-07 62.4 60 50.0
MBI19_g13594_MAGBIO Magnolia biondii HOM05D003782 ORTHO05D004361 7.7e-07 60.5 60 45.0
Zm00001eb274810 Zea mays HOM05D003782 ORTHO05D004361 1.7e-06 59.3 55 56.4
MCO02G174 Micromonas commoda HOM05D003782 ORTHO05D004361 5.0e-06 57.8 309 26.5


User provided reference genes

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