Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-84 316.6 159 100.0
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 3.1e-68 261.9 138 94.9
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.6e-67 259.6 137 96.4
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 1.7e-66 256.1 137 93.4
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 4.2e-57 224.9 136 84.6
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.2e-56 223.4 136 83.1
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.8e-56 222.2 136 83.1
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 2.8e-56 222.2 136 82.4
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 6.1e-56 221.1 136 82.4
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.0e-55 220.3 136 81.6
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 1.4e-55 219.9 138 79.7
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 1.8e-55 219.5 136 81.6
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.0e-55 218.8 136 81.6
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 3.0e-55 218.8 136 82.4
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 4.0e-55 218.4 136 80.9
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 8.9e-55 217.2 136 80.9
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.5e-54 216.5 136 80.9
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 5.7e-54 214.5 139 81.3
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 1.7e-53 213.0 136 80.1
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 2.2e-53 212.6 136 80.9
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 2.2e-53 212.6 136 80.9
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 2.9e-53 212.2 135 75.6
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 3.7e-53 211.8 136 80.1
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 4.9e-53 211.5 135 79.3
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 6.3e-53 211.1 136 79.4
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 6.3e-53 211.1 136 80.9
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 6.3e-53 211.1 136 77.2
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 8.3e-53 210.7 138 78.3
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 3.2e-52 208.8 136 78.7
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 3.2e-52 208.8 137 75.9
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 4.1e-52 208.4 135 77.8
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 5.4e-52 208.0 135 77.0
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 7.0e-52 207.6 136 79.4
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 7.0e-52 207.6 136 79.4
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 7.0e-52 207.6 136 78.7
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 9.2e-52 207.2 135 77.0
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 9.2e-52 207.2 136 78.7
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.2e-51 206.8 136 78.7
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 2.0e-51 206.1 136 78.7
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.7e-51 205.7 136 78.7
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.7e-51 205.7 136 75.7
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 3.5e-51 205.3 136 77.9
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 3.5e-51 205.3 136 76.5
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 4.6e-51 204.9 135 75.6
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 7.8e-51 204.1 136 76.5
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 7.8e-51 204.1 135 75.6
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.0e-50 203.8 136 77.2
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.3e-50 203.4 136 76.5
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.7e-50 203.0 165 67.9
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 5.0e-50 201.4 135 74.1
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 8.6e-50 200.7 135 75.6
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 8.6e-50 200.7 136 76.5
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.1e-49 200.3 136 73.5
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 1.1e-49 200.3 136 75.0
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.9e-49 199.5 136 75.0
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.9e-49 199.5 135 73.3
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 4.3e-49 198.4 136 75.0
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 5.6e-49 198.0 136 77.2
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 7.3e-49 197.6 136 74.3
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.2e-48 196.8 135 71.9
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 2.8e-48 195.7 136 73.5
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 4.7e-48 194.9 136 72.1
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.7e-48 194.9 135 73.3
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 1.0e-47 193.7 186 59.7
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.4e-47 193.4 139 68.3
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.4e-47 193.4 135 70.4
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-47 192.6 136 71.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 3.1e-47 192.2 137 71.5
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.0e-47 191.8 137 73.0
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 4.0e-47 191.8 144 70.1
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 5.2e-47 191.4 135 71.9
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 6.8e-47 191.0 136 72.1
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 6.8e-47 191.0 136 72.1
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 6.8e-47 191.0 136 72.1
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.8e-47 191.0 139 69.8
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 8.9e-47 190.7 135 69.6
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 1.2e-46 190.3 136 69.1
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.5e-46 189.9 137 70.1
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.0e-46 189.5 136 68.4
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.0e-46 189.5 135 69.6
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 7.5e-46 187.6 132 72.0
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 7.5e-46 187.6 136 71.3
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 7.5e-46 187.6 144 69.4
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 9.8e-46 187.2 136 67.6
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 1.3e-45 186.8 136 69.1
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.7e-45 186.4 134 70.9
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.7e-45 186.4 134 70.9
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 6.4e-45 184.5 136 68.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.4e-44 183.3 158 62.0
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 7.0e-44 181.0 135 69.6
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 9.2e-44 180.6 135 67.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 2.0e-43 179.5 151 64.9
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 3.5e-43 178.7 139 67.6
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.7e-42 176.4 126 70.6
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.7e-42 176.4 126 70.6
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 2.3e-42 176.0 168 58.9
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 2.3e-42 176.0 135 67.4
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 3.0e-42 175.6 135 66.7
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 6.6e-42 174.5 137 64.2
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 8.6e-42 174.1 136 69.9
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 4.3e-41 171.8 166 59.0
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 9.5e-41 170.6 123 72.4
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 4.7e-40 168.3 130 66.2
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 8.1e-40 167.5 136 68.4
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.1e-39 167.2 133 63.2
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-38 163.3 136 65.4
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 1.5e-38 163.3 136 65.4
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 9.8e-38 160.6 140 61.4
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 8.3e-37 157.5 135 63.7
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 1.1e-36 157.1 135 63.0
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 6.0e-35 151.4 177 48.6
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.0e-34 150.6 136 60.3
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 1.5e-33 146.7 133 60.2
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 2.5e-33 146.0 100 74.0
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 7.3e-33 144.4 135 58.5
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.4e-31 140.2 100 73.0
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 4.0e-31 138.7 104 69.2
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 7.6e-30 134.4 143 53.8
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 5.4e-28 128.3 142 52.1
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 3.1e-23 112.5 79 73.4
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 8.9e-23 110.9 80 73.8
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.4e-22 109.0 81 66.7
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 1.3e-21 107.1 124 47.6
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 2.9e-21 105.9 137 44.5
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.1e-20 104.0 65 76.9
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 9.3e-20 100.9 88 59.1
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.2e-19 100.5 130 45.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.1e-17 94.0 65 70.8
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.1e-17 94.0 99 49.5
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 3.6e-16 89.0 107 48.6
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 5.3e-15 85.1 95 44.2
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 1.2e-14 84.0 85 55.3
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 2.3e-10 69.7 94 46.8
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 3.9e-10 68.9 37 86.5
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 6.6e-10 68.2 37 86.5
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.6e-10 68.2 37 83.8
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 2.8e-08 62.8 37 75.7
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 3.6e-08 62.4 37 70.3
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.8e-08 62.0 37 78.4
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 8.1e-08 61.2 37 70.3
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 1.4e-07 60.5 52 53.8
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.5e-06 57.0 37 73.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.6e-06 56.2 37 73.0
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 2.6e-06 56.2 37 73.0
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 3.4e-06 55.8 68 50.0
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 3.4e-06 55.8 37 64.9


User provided reference genes

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