Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1156 Cannabis sativa HOM05D004985 ORTHO05D005912 7.5e-172 607.1 300 100.0
Prupe.5G205100 Prunus persica HOM05D004985 ORTHO05D005912 8.4e-123 444.1 302 76.8
QL10p019503 Quercus lobata HOM05D004985 ORTHO05D005912 9.0e-117 424.1 299 73.9
RcHm_v2.0_Chr7g0183091 Rosa chinensis HOM05D004985 ORTHO05D005912 6.5e-115 417.9 300 71.7
CiPaw.11G053300 Carya illinoinensis HOM05D004985 ORTHO05D005912 1.9e-114 416.4 300 74.7
FAN13G1687 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.9e-114 416.4 302 71.2
FvH4_5g13840 Fragaria vesca HOM05D004985 ORTHO05D005912 7.1e-114 414.5 301 71.1
Ciclev10021430m.g Citrus clementina HOM05D004985 ORTHO05D005912 1.6e-113 413.3 300 73.0
Eucgr.K02531 Eucalyptus grandis HOM05D004985 ORTHO05D005912 1.3e-112 410.2 301 72.4
Manes.14G085700 Manihot esculenta HOM05D004985 ORTHO05D005912 1.3e-112 410.2 300 72.3
GSVIVG01007867001 Vitis vinifera HOM05D004985 ORTHO05D005912 1.8e-112 409.8 285 74.0
Atru.chr9.579 Acer truncatum HOM05D004985 ORTHO05D005912 3.9e-112 408.7 300 73.7
COL.COLO4_06857 Corchorus olitorius HOM05D004985 ORTHO05D005912 6.7e-112 407.9 300 71.3
CsaV3_1G002920 Cucumis sativus L. HOM05D004985 ORTHO05D005912 9.6e-111 404.1 286 73.1
Cpa.g.sc94.56 Carica papaya HOM05D004985 ORTHO05D005912 3.7e-110 402.1 300 71.0
Sed0020095 Sechium edule HOM05D004985 ORTHO05D005912 1.8e-109 399.8 286 71.7
TAR374G0278 Trochodendron aralioides HOM05D004985 ORTHO05D005912 3.1e-109 399.1 300 69.0
Duzib205G0214 Durio zibethinus HOM05D004985 ORTHO05D005912 4.1e-109 398.7 302 70.2
ClCG06G015640 Citrullus lanatus HOM05D004985 ORTHO05D005912 6.9e-109 397.9 301 70.1
Thecc.03G101800 Theobroma cacao HOM05D004985 ORTHO05D005912 6.9e-109 397.9 300 70.3
Hma1.2p1_0060F.1_g033100 Hydrangea macrophylla HOM05D004985 ORTHO05D005912 1.5e-108 396.7 277 72.6
CSS0016421 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.6e-108 396.0 302 67.9
CSS0040501 Camellia sinensis var. sinensis HOM05D004985 ORTHO05D005912 2.6e-108 396.0 302 67.9
Oeu014411.1 Olea europaea HOM05D004985 ORTHO05D005912 3.4e-108 395.6 284 71.8
TWI31G1299 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 3.4e-108 395.6 304 67.8
Gohir.D07G073100 Gossypium hirsutum HOM05D004985 ORTHO05D005912 4.5e-108 395.2 301 69.4
Actinidia04825 Actinidia chinensis HOM05D004985 ORTHO05D004228 5.9e-108 394.8 301 68.4
Gorai.001G077300 Gossypium raimondii HOM05D004985 ORTHO05D005912 1.0e-107 394.0 301 69.1
PSO478G5014 Papaver somniferum HOM05D004985 ORTHO05D005912 1.0e-107 394.0 301 67.1
Gohir.A07G068600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 1.3e-107 393.7 301 69.8
PGR044G1445 Punica granatum HOM05D004985 ORTHO05D005912 2.2e-107 392.9 285 70.5
Cc09_g09310 Coffea canephora HOM05D004985 ORTHO05D005912 2.9e-107 392.5 301 70.1
Potri.012G066200 Populus trichocarpa HOM05D004985 ORTHO05D005912 3.8e-107 392.1 303 69.6
PGSC0003DMG400030337 Solanum tuberosum HOM05D004985 ORTHO05D005912 1.4e-106 390.2 300 70.0
Dinv22782 Davidia involucrata HOM05D004985 ORTHO05D005912 1.9e-106 389.8 288 71.2
PSO017G5703 Papaver somniferum HOM05D004985 ORTHO05D005912 1.9e-106 389.8 301 65.4
TWI79G1560 Tripterygium wilfordii HOM05D004985 ORTHO05D005912 1.9e-106 389.8 230 80.9
DCAR_029981 Daucus carota HOM05D004985 ORTHO05D005912 5.5e-106 388.3 302 66.2
THA.LOC104812106 Tarenaya hassleriana HOM05D004985 ORTHO05D005912 5.5e-106 388.3 301 69.8
vmacro17610 Vaccinium macrocarpon HOM05D004985 ORTHO05D005912 5.5e-106 388.3 254 78.0
Hund02586 Selenicereus undatus HOM05D004985 ORTHO05D005912 7.2e-106 387.9 300 67.7
Aqoxy3G03694 Aquilegia oxysepala HOM05D004985 ORTHO05D005912 2.1e-105 386.3 302 65.6
CARHR019270 Cardamine hirsuta HOM05D004985 ORTHO05D005912 2.1e-105 386.3 299 68.6
MSTRG.9599 Avicennia marina HOM05D004985 ORTHO05D005912 2.7e-105 386.0 250 78.0
MBI19_g00634_MAGBIO Magnolia biondii HOM05D004985 ORTHO05D005912 3.5e-105 385.6 304 66.4
MD14G1211600 Malus domestica HOM05D004985 ORTHO05D005912 3.5e-105 385.6 257 77.0
Oeu042721.3 Olea europaea HOM05D004985 ORTHO05D005912 4.6e-105 385.2 284 70.4
SalBow4G0956 Salvia bowleyana HOM05D004985 ORTHO05D005912 4.6e-105 385.2 250 79.2
Sed0001113 Sechium edule HOM05D004985 ORTHO05D005912 6.1e-105 384.8 286 69.2
Sopen06g032910 Solanum pennellii HOM05D004985 ORTHO05D005912 6.1e-105 384.8 300 69.0
arahy.Tifrunner.gnm1.ann1.B21894 Arachis hypogaea HOM05D004985 ORTHO05D005912 7.9e-105 384.4 310 66.5
FAN18G1860 Fragaria x ananassa HOM05D004985 ORTHO05D005912 1.0e-104 384.0 301 67.4
MELO3C017224.2 Cucumis melo HOM05D004985 ORTHO05D005912 1.3e-104 383.6 321 65.4
Sabra12G0048600 Salix brachista HOM05D004985 ORTHO05D005912 1.8e-104 383.3 326 64.4
Solyc06g076510.3 Solanum lycopersicum HOM05D004985 ORTHO05D005912 2.3e-104 382.9 300 69.0
arahy.Tifrunner.gnm1.ann1.XT1KNI Arachis hypogaea HOM05D004985 ORTHO05D005912 3.0e-104 382.5 310 66.1
MSTRG.15338 Avicennia marina HOM05D004985 ORTHO05D005912 5.1e-104 381.7 307 65.8
FAN08G1159 Fragaria x ananassa HOM05D004985 ORTHO05D005912 5.1e-104 381.7 302 68.5
AT1G18640 Arabidopsis thaliana HOM05D004985 ORTHO05D005912 6.7e-104 381.3 300 68.3
CSS0005049 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D005912 8.7e-104 380.9 313 65.5
CAN.G394.86 Capsicum annuum HOM05D004985 ORTHO05D005912 1.9e-103 379.8 300 68.3
Glyma.04G162700 Glycine max HOM05D004985 ORTHO05D005912 3.3e-103 379.0 298 67.4
Medtr3g025840 Medicago truncatula HOM05D004985 ORTHO05D005912 3.3e-103 379.0 280 67.1
MD06G1202500 Malus domestica HOM05D004985 ORTHO05D005912 4.3e-103 378.6 257 76.3
AUR62021560 Chenopodium quinoa HOM05D004985 ORTHO05D005912 7.4e-103 377.9 300 66.0
Thhalv10008334m.g Eutrema salsugineum HOM05D004985 ORTHO05D005912 9.7e-103 377.5 302 67.2
AL1G31080 Arabidopsis lyrata HOM05D004985 ORTHO05D005912 1.3e-102 377.1 280 71.1
Ca_14341_v3 Cicer arietinum L. HOM05D004985 ORTHO05D005912 2.2e-102 376.3 281 67.3
Migut.D01657 Erythranthe guttata HOM05D004985 ORTHO05D005912 2.8e-102 375.9 250 76.8
Psat5g208200 Pisum sativum HOM05D004985 ORTHO05D005912 2.8e-102 375.9 255 73.3
BcaB07g31884 Brassica carinata HOM05D004985 ORTHO05D005912 4.8e-102 375.2 255 74.9
BraA06t24599Z Brassica rapa HOM05D004985 ORTHO05D005912 4.8e-102 375.2 255 74.1
AUR62008533 Chenopodium quinoa HOM05D004985 ORTHO05D005912 4.8e-102 375.2 304 66.4
A06p14760 Brassica napus HOM05D004985 ORTHO05D005912 6.3e-102 374.8 255 74.5
Nitab4.5_0000116g0440 Nicotiana tabacum HOM05D004985 ORTHO05D005912 6.3e-102 374.8 299 67.2
TPR.G12221 Trifolium pratense HOM05D004985 ORTHO05D005912 6.3e-102 374.8 247 74.5
BcaC05g25759 Brassica carinata HOM05D004985 ORTHO05D005912 8.2e-102 374.4 267 71.5
C05p16910 Brassica napus HOM05D004985 ORTHO05D005912 8.2e-102 374.4 267 71.5
BolC5t30393H Brassica oleracea HOM05D004985 ORTHO05D005912 8.2e-102 374.4 267 71.5
Haze_18480 Corylus avellana HOM05D004985 ORTHO05D005912 1.1e-101 374.0 274 71.9
Glyma.06G203300 Glycine max HOM05D004985 ORTHO05D005912 1.1e-101 374.0 228 80.3
Manes.06G084800 Manihot esculenta HOM05D004985 ORTHO05D005912 4.1e-101 372.1 251 74.5
Sp1g16610 Schrenkiella parvula HOM05D004985 ORTHO05D005912 6.9e-101 371.3 303 66.7
Carub.0001s1827 Capsella rubella HOM05D004985 ORTHO05D005912 2.0e-100 369.8 285 68.4
Peaxi162Scf00481g00631 Petunia axillaris HOM05D004985 ORTHO05D005912 3.4e-100 369.0 301 66.1
Lj1g0020192 Lotus japonicus HOM05D004985 ORTHO05D005912 7.7e-100 367.9 300 65.3
TPR.G28540 Trifolium pratense HOM05D004985 ORTHO05D005912 7.7e-100 367.9 255 71.0
A08p30280 Brassica napus HOM05D004985 ORTHO05D005912 2.2e-99 366.3 243 74.9
Carub.0007s3048 Capsella rubella HOM05D004985 ORTHO05D005912 3.8e-99 365.5 265 70.9
Lsat_1_v5_gn_2_122560 Lactuca sativa HOM05D004985 ORTHO05D005912 6.5e-99 364.8 305 63.9
SGA_v2.0_scaffold42G16037 Striga asiatica HOM05D004985 ORTHO05D005912 6.5e-99 364.8 252 73.8
ECA232G4926 Erigeron canadensis HOM05D004985 ORTHO05D005912 8.5e-99 364.4 253 72.7
Nitab4.5_0004739g0030 Nicotiana tabacum HOM05D004985 ORTHO05D005912 1.9e-98 363.2 287 67.9
HanXRQChr09g0270221 Helianthus annuus HOM05D004985 ORTHO05D005912 7.2e-98 361.3 253 72.7
BraA08t34961Z Brassica rapa HOM05D004985 ORTHO05D005912 9.4e-98 360.9 275 66.9
Phvul.010G007300 Phaseolus vulgaris HOM05D004985 ORTHO05D005912 1.2e-97 360.5 228 76.8
Os11g0629500 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 2.1e-97 359.8 242 73.6
Lalb_Chr12g0197201 Lupinus albus HOM05D004985 ORTHO05D005912 2.7e-97 359.4 228 76.8
Aa31LG7G3400 Aethionema arabicum HOM05D004985 ORTHO05D005912 1.8e-96 356.7 292 66.4
EL10Ac8g18666 Beta vulgaris HOM05D004985 ORTHO05D005912 3.0e-96 355.9 221 79.6
VMungo0331G0044 Vigna mungo HOM05D004985 ORTHO05D005912 3.9e-96 355.5 228 76.3
TAR622G1020 Trochodendron aralioides HOM05D004985 ORTHO05D005912 5.7e-95 351.7 303 63.0
unitig_60.g25411 Utricularia gibba HOM05D004985 ORTHO05D005912 4.8e-94 348.6 243 71.6
Nn4g23424 Nelumbo nucifera HOM05D004985 ORTHO05D005912 1.8e-93 346.7 287 65.2
Rhsim08G0146000 Rhododendron simsii HOM05D004985 ORTHO05D005912 4.1e-93 345.5 371 54.7
Os12g0502400 Oryza sativa ssp. japonica HOM05D004985 ORTHO05D005912 1.5e-92 343.6 270 65.2
Zm00001eb166440 Zea mays HOM05D004985 ORTHO05D005912 1.5e-92 343.6 226 74.3
C08p18810 Brassica napus HOM05D004985 ORTHO05D005912 3.4e-92 342.4 350 56.3
ATR0681G325 Amborella trichopoda HOM05D004985 ORTHO05D005912 2.9e-91 339.3 238 70.6
Lj1g0027941 Lotus japonicus HOM05D004985 ORTHO05D005912 3.8e-91 339.0 228 74.1
Nn3g17450 Nelumbo nucifera HOM05D004985 ORTHO05D005912 5.1e-88 328.6 261 68.2
AUR62008530 Chenopodium quinoa HOM05D004985 ORTHO05D005912 2.0e-87 326.6 304 60.9
Duzib084G0347 Durio zibethinus HOM05D004985 ORTHO05D005912 8.2e-86 321.2 302 59.3
BolC8t49507H Brassica oleracea HOM05D004985 ORTHO05D005912 2.0e-84 316.6 267 64.4
BcaC07g38933 Brassica carinata HOM05D004985 ORTHO05D005912 4.5e-84 315.5 264 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2773 Anthoceros agrestis HOM05D004985 ORTHO05D005912 1.3e-83 313.9 223 68.6
Pp3c8_16890 Physcomitrium patens HOM05D004985 ORTHO05D005912 2.2e-83 313.2 228 67.1
Cc11_g04830 Coffea canephora HOM05D004985 ORTHO05D005912 6.1e-81 305.1 257 65.4
CDE06G0240 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.0e-80 302.8 195 75.9
SMO137G0315 Selaginella moellendorffii HOM05D004985 ORTHO05D005912 1.5e-79 300.4 225 64.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.2e-78 296.6 213 68.1
Sc10g0009710 Simmondsia chinensis HOM05D004985 ORTHO05D005912 2.2e-78 296.6 195 75.9
Mapoly0023s0019 Marchantia polymorpha HOM05D004985 ORTHO05D005912 4.5e-76 288.9 220 65.0
CDE07G0155 Ceratophyllum demersum HOM05D004985 ORTHO05D005912 3.6e-65 252.7 249 51.0
MCO16G297 Micromonas commoda HOM05D004985 ORTHO05D005912 1.4e-64 250.8 224 54.9
PRCOL_00003809 Prasinoderma coloniale HOM05D004985 ORTHO05D005912 4.0e-64 249.2 228 57.9
Actinidia16126 Actinidia chinensis HOM05D003322 ORTHO05D005912 1.8e-61 240.4 275 51.3
Cre04.g217955 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 3.3e-58 229.6 214 53.3
Cre04.g217959 Chlamydomonas reinhardtii HOM05D004985 ORTHO05D005912 3.3e-58 229.6 214 53.3
Nitab4.5_0000744g0020 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.3e-58 229.6 428 38.8
SGA_v2.0_scaffold3G01460 Striga asiatica HOM05D004985 ORTHO05D005912 4.0e-56 222.6 142 78.9
Lj7A653T48 Lonicera japonica HOM05D004985 ORTHO05D005912 1.2e-55 221.1 142 76.1
Cre01.g053000 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 6.6e-51 205.3 234 46.2
Cre10.g421700 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 1.5e-50 204.1 298 40.3
Nitab4.5_0002968g0050 Nicotiana tabacum HOM05D004985 ORTHO05D005912 3.3e-50 203.0 133 73.7
Cre01.g053150 Chlamydomonas reinhardtii HOM05D004424 ORTHO05D005476 9.5e-50 201.4 234 45.7
HPP92_012184 Vanilla planifolia HOM05D004985 ORTHO05D005912 2.4e-45 186.8 141 65.2
Haze_07724 Corylus avellana HOM05D004985 ORTHO05D005912 2.0e-44 183.7 147 66.7
EL10Ac1g02367 Beta vulgaris HOM05D004985 ORTHO05D005912 1.9e-42 177.2 138 66.7
SGA_v2.0_scaffold1066G53824 Striga asiatica HOM05D004985 ORTHO05D005912 1.7e-38 164.1 120 71.7
HPP92_012182 Vanilla planifolia HOM05D004985 ORTHO05D005912 8.3e-38 161.8 112 72.3
Gohir.A07G164340 Gossypium hirsutum HOM05D004985 ORTHO05D005912 3.0e-35 153.3 97 79.4
Gohir.A06G085600 Gossypium hirsutum HOM05D004985 ORTHO05D005912 6.2e-33 145.6 97 77.3
CBR_g37694 Chara braunii HOM05D004985 ORTHO05D005912 1.2e-31 141.4 109 60.6
SEGI_10948 Sequoiadendron giganteum HOM05D004985 ORTHO05D005912 6.4e-30 135.6 80 80.0
SalBow5G1356 Salvia bowleyana HOM05D004985 ORTHO05D005912 1.0e-27 128.3 101 70.3
Oeu014405.1 Olea europaea HOM05D004985 ORTHO05D005912 3.4e-23 113.2 92 66.3
Peaxi162Scf00086g01110 Petunia axillaris HOM05D004985 ORTHO05D005912 3.4e-23 113.2 161 51.6
Cfa004103 Carpinus fangiana HOM05D004985 ORTHO05D005912 3.8e-22 109.8 157 50.3
Haze_15308 Corylus avellana HOM05D004985 ORTHO05D005912 7.1e-21 105.5 67 74.6
SHI27080 Sapria himalayana HOM05D004985 ORTHO05D005912 3.8e-14 83.2 72 59.7
Cfa024059 Carpinus fangiana HOM05D004985 ORTHO05D005912 4.0e-08 63.2 194 32.5


User provided reference genes

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