Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1141 Cannabis sativa HOM05D005665 ORTHO05D007230 4.5e-194 681.0 332 100.0
QL05p039803 Quercus lobata HOM05D005665 ORTHO05D007230 3.3e-168 595.1 320 88.8
MD10G1295900 Malus domestica HOM05D005665 ORTHO05D007230 5.6e-168 594.3 330 85.8
Prupe.4G044600 Prunus persica HOM05D005665 ORTHO05D007230 7.3e-168 594.0 318 88.7
RcHm_v2.0_Chr5g0008091 Rosa chinensis HOM05D005665 ORTHO05D007230 1.2e-167 593.2 332 85.2
FAN21G3875 Fragaria x ananassa HOM05D005665 ORTHO05D007230 1.6e-167 592.8 330 84.8
TWI38G1053 Tripterygium wilfordii HOM05D005665 ORTHO05D007230 1.6e-167 592.8 329 86.3
CiPaw.09G058000 Carya illinoinensis HOM05D005665 ORTHO05D007230 2.1e-167 592.4 332 84.9
FvH4_3g04930 Fragaria vesca HOM05D005665 ORTHO05D007230 2.8e-167 592.0 330 85.2
FAN11G2254 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.8e-167 592.0 330 85.2
FAN25G3768 Fragaria x ananassa HOM05D005665 ORTHO05D007230 8.0e-167 590.5 330 84.8
Gohir.A06G126400 Gossypium hirsutum HOM05D005665 ORTHO05D007230 1.0e-166 590.1 312 86.9
TPR.G36824 Trifolium pratense HOM05D005665 ORTHO05D007230 1.4e-166 589.7 318 86.8
Thecc.06G190100 Theobroma cacao HOM05D005665 ORTHO05D007230 3.1e-166 588.6 332 84.0
Medtr2g013070 Medicago truncatula HOM05D005665 ORTHO05D007230 4.0e-166 588.2 318 86.5
Solyc10g009030.4 Solanum lycopersicum HOM05D005665 ORTHO05D007230 4.0e-166 588.2 320 86.2
CiPaw.10G047200 Carya illinoinensis HOM05D005665 ORTHO05D007230 8.9e-166 587.0 332 84.6
Sopen10g004810 Solanum pennellii HOM05D005665 ORTHO05D007230 8.9e-166 587.0 320 86.2
Actinidia05618 Actinidia chinensis HOM05D005665 ORTHO05D007230 1.2e-165 586.6 312 89.1
Duzib192G0757 Durio zibethinus HOM05D005665 ORTHO05D007230 1.2e-165 586.6 319 85.9
FAN16G3723 Fragaria x ananassa HOM05D005665 ORTHO05D007230 2.6e-165 585.5 330 84.2
Nitab4.5_0013250g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 2.6e-165 585.5 320 85.9
PGSC0003DMG400022827 Solanum tuberosum HOM05D005665 ORTHO05D007230 2.6e-165 585.5 320 85.9
Cfa000422 Carpinus fangiana HOM05D005665 ORTHO05D007230 3.4e-165 585.1 318 86.5
Gohir.D06G131200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 4.4e-165 584.7 312 86.2
Gorai.011G026500 Gossypium raimondii HOM05D005665 ORTHO05D007230 4.4e-165 584.7 327 84.1
Gohir.D10G025200 Gossypium hirsutum HOM05D005665 ORTHO05D007230 5.8e-165 584.3 319 85.9
Gohir.A10G024500 Gossypium hirsutum HOM05D005665 ORTHO05D007230 7.5e-165 583.9 327 83.8
MELO3C002591.2 Cucumis melo HOM05D005665 ORTHO05D007230 9.8e-165 583.6 314 86.9
Gorai.010G153100 Gossypium raimondii HOM05D005665 ORTHO05D007230 9.8e-165 583.6 312 85.9
CsaV3_1G012180 Cucumis sativus L. HOM05D005665 ORTHO05D007230 1.3e-164 583.2 314 86.9
ClCG03G005940 Citrullus lanatus HOM05D005665 ORTHO05D007230 1.7e-164 582.8 318 86.5
Lj6g0021271 Lotus japonicus HOM05D005665 ORTHO05D007230 1.7e-164 582.8 318 87.4
Dinv07542 Davidia involucrata HOM05D005665 ORTHO05D007230 2.9e-164 582.0 312 87.2
Potri.011G050800 Populus trichocarpa HOM05D005665 ORTHO05D007230 3.7e-164 581.6 336 84.8
Peaxi162Scf00530g00218 Petunia axillaris HOM05D005665 ORTHO05D007230 1.1e-163 580.1 331 82.8
Duzib160G0567 Durio zibethinus HOM05D005665 ORTHO05D007230 1.4e-163 579.7 331 84.0
Ca_00306_v3 Cicer arietinum L. HOM05D005665 ORTHO05D007230 1.9e-163 579.3 314 86.6
Actinidia01890 Actinidia chinensis HOM05D005665 ORTHO05D007230 2.4e-163 578.9 308 88.6
ClCG01G022870 Citrullus lanatus HOM05D005665 ORTHO05D007230 2.4e-163 578.9 327 83.5
Aqoxy4G01024 Aquilegia oxysepala HOM05D005665 ORTHO05D007230 3.2e-163 578.6 325 82.5
Peaxi162Scf00461g00010 Petunia axillaris HOM05D005665 ORTHO05D007230 3.2e-163 578.6 325 84.3
Psat1g206640 Pisum sativum HOM05D005665 ORTHO05D007230 3.2e-163 578.6 318 86.2
Sed0027057 Sechium edule HOM05D005665 ORTHO05D007230 3.2e-163 578.6 314 86.3
Lalb_Chr18g0059701 Lupinus albus HOM05D005665 ORTHO05D007230 5.4e-163 577.8 326 85.3
TAR627G0371 Trochodendron aralioides HOM05D005665 ORTHO05D007230 5.4e-163 577.8 316 86.7
Nitab4.5_0003942g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 9.2e-163 577.0 326 84.4
Carub.0006s3285 Capsella rubella HOM05D005665 ORTHO05D007230 1.2e-162 576.6 317 84.5
Nitab4.5_0004775g0030 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.2e-162 576.6 325 84.0
Hma1.2p1_0126F.1_g059290 Hydrangea macrophylla HOM05D005665 ORTHO05D007230 1.6e-162 576.2 316 85.4
Nitab4.5_0005615g0050 Nicotiana tabacum HOM05D005665 ORTHO05D007230 1.6e-162 576.2 320 84.7
THA.LOC104812890 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 1.6e-162 576.2 312 86.5
Cpa.g.sc27.60 Carica papaya HOM05D005665 ORTHO05D007230 2.0e-162 575.9 333 82.9
TAR626G1890 Trochodendron aralioides HOM05D005665 ORTHO05D007230 2.0e-162 575.9 316 86.1
Sp6g04030 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.7e-162 575.5 312 85.6
SpUn0051_0010 Schrenkiella parvula HOM05D005665 ORTHO05D007230 2.7e-162 575.5 312 85.6
THA.LOC104806290 Tarenaya hassleriana HOM05D005665 ORTHO05D007230 4.6e-162 574.7 332 81.9
AT4G04930 Arabidopsis thaliana HOM05D005665 ORTHO05D007230 6.0e-162 574.3 318 85.2
CSS0000582 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 6.0e-162 574.3 311 85.5
Thhalv10028789m.g Eutrema salsugineum HOM05D005665 ORTHO05D007230 7.8e-162 573.9 324 82.7
A09p25970 Brassica napus HOM05D005665 ORTHO05D007230 1.0e-161 573.5 324 82.4
BolC9t56129H Brassica oleracea HOM05D005665 ORTHO05D007230 1.0e-161 573.5 324 82.4
BraA09t38164Z Brassica rapa HOM05D005665 ORTHO05D007230 1.0e-161 573.5 324 82.4
Ciclev10015896m.g Citrus clementina HOM05D005665 ORTHO05D007230 1.0e-161 573.5 335 82.4
Migut.M01155 Erythranthe guttata HOM05D005665 ORTHO05D007230 1.3e-161 573.2 324 84.9
Nn1g04043 Nelumbo nucifera HOM05D005665 ORTHO05D007230 1.3e-161 573.2 313 84.7
Glyma.15G072800 Glycine max HOM05D005665 ORTHO05D007230 2.3e-161 572.4 318 84.3
Manes.16G026000 Manihot esculenta HOM05D005665 ORTHO05D007230 2.3e-161 572.4 319 84.3
Sed0024618 Sechium edule HOM05D005665 ORTHO05D007230 2.3e-161 572.4 318 83.6
SalBow7G1156 Salvia bowleyana HOM05D005665 ORTHO05D007230 5.0e-161 571.2 317 84.2
Lj2A287T49 Lonicera japonica HOM05D005665 ORTHO05D007230 6.6e-161 570.9 308 86.4
Manes.17G043900 Manihot esculenta HOM05D005665 ORTHO05D007230 6.6e-161 570.9 329 82.1
Cc02_g13170 Coffea canephora HOM05D005665 ORTHO05D007230 5.6e-160 567.8 308 84.4
Sabra11G0034800 Salix brachista HOM05D005665 ORTHO05D007230 5.6e-160 567.8 336 82.1
GSVIVG01002020001 Vitis vinifera HOM05D005665 ORTHO05D007230 2.1e-159 565.8 308 85.1
MSTRG.7328 Avicennia marina HOM05D005665 ORTHO05D007230 2.8e-159 565.5 325 82.5
BcaC04g21346 Brassica carinata HOM05D005665 ORTHO05D007230 2.8e-159 565.5 324 81.2
C09p32940 Brassica napus HOM05D005665 ORTHO05D007230 2.8e-159 565.5 324 81.2
Oeu053967.2 Olea europaea HOM05D005665 ORTHO05D007230 2.8e-159 565.5 330 82.7
Atru.chr10.1913 Acer truncatum HOM05D005665 ORTHO05D007230 4.7e-159 564.7 333 82.3
Eucgr.E03124 Eucalyptus grandis HOM05D005665 ORTHO05D007230 4.7e-159 564.7 322 82.9
Nn1g06596 Nelumbo nucifera HOM05D005665 ORTHO05D007230 8.1e-159 563.9 330 80.0
COL.COLO4_31496 Corchorus olitorius HOM05D005665 ORTHO05D007230 2.3e-158 562.4 304 87.5
SGA_v2.0_scaffold22G09724 Striga asiatica HOM05D005665 ORTHO05D007230 5.2e-158 561.2 311 83.9
Os02g0639600 Oryza sativa ssp. japonica HOM05D005665 ORTHO05D007230 6.8e-158 560.8 317 82.3
PGR042G0011 Punica granatum HOM05D005665 ORTHO05D007230 2.6e-157 558.9 325 81.5
PSO210G3809 Papaver somniferum HOM05D005665 ORTHO05D007230 3.4e-157 558.5 333 78.7
PSO832G3519 Papaver somniferum HOM05D005665 ORTHO05D007230 3.4e-157 558.5 333 78.7
VMungo0540G1872 Vigna mungo HOM05D005665 ORTHO05D007230 4.4e-157 558.1 318 82.4
BcaB01g01848 Brassica carinata HOM05D005665 ORTHO05D007230 5.8e-157 557.8 312 84.0
Glyma.13G240700 Glycine max HOM05D005665 ORTHO05D007230 5.8e-157 557.8 318 82.1
AUR62016991 Chenopodium quinoa HOM05D005665 ORTHO05D007230 7.5e-157 557.4 332 79.2
Phvul.006G187100 Phaseolus vulgaris HOM05D005665 ORTHO05D007230 9.9e-157 557.0 318 83.0
Sc05g0007780 Simmondsia chinensis HOM05D005665 ORTHO05D007230 9.9e-157 557.0 318 81.8
AUR62014800 Chenopodium quinoa HOM05D005665 ORTHO05D007230 1.3e-156 556.6 314 82.2
Haze_06494 Corylus avellana HOM05D005665 ORTHO05D007230 2.2e-156 555.8 376 72.6
SHI01876 Sapria himalayana HOM05D005665 ORTHO05D007230 4.9e-156 554.7 346 77.2
Aa31LG9G9560 Aethionema arabicum HOM05D005665 ORTHO05D007230 1.2e-154 550.1 317 80.8
arahy.Tifrunner.gnm1.ann1.5IXZ6F Arachis hypogaea HOM05D005665 ORTHO05D007230 2.1e-154 549.3 325 80.0
Zm00001eb075800 Zea mays HOM05D005665 ORTHO05D007230 3.5e-154 548.5 317 79.2
arahy.Tifrunner.gnm1.ann1.C923ZL Arachis hypogaea HOM05D005665 ORTHO05D007230 6.0e-154 547.7 325 79.7
ATR0680G322 Amborella trichopoda HOM05D005665 ORTHO05D007230 1.0e-153 547.0 320 79.4
EL10Ac8g20360 Beta vulgaris HOM05D005665 ORTHO05D007230 1.0e-153 547.0 332 77.4
MBI18_g16999_MAGBIO Magnolia biondii HOM05D005665 ORTHO05D007230 4.7e-151 538.1 316 81.0
Ah.09g237240 Amaranthus hybridus HOM05D005665 ORTHO05D007230 4.3e-144 515.0 308 78.9
Lsat_1_v5_gn_1_126041 Lactuca sativa HOM05D005665 ORTHO05D007230 6.2e-143 511.1 308 75.6
SEGI_10058 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 4.0e-142 508.4 314 74.5
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 1.9e-139 499.6 295 77.3
HPP92_021012 Vanilla planifolia HOM05D005665 ORTHO05D007230 5.4e-139 498.0 324 72.5
CAN.G413.22 Capsicum annuum HOM05D005665 ORTHO05D007230 4.6e-138 495.0 264 87.1
Eucgr.L02776 Eucalyptus grandis HOM05D005665 ORTHO05D007230 4.6e-138 495.0 276 84.1
Nitab4.5_0002158g0010 Nicotiana tabacum HOM05D005665 ORTHO05D007230 3.9e-137 491.9 305 78.0
RhsimUnG0044900 Rhododendron simsii HOM05D005665 ORTHO05D007230 1.5e-136 490.0 268 84.7
Mapoly0083s0054 Marchantia polymorpha HOM05D005665 ORTHO05D007230 9.0e-134 480.7 312 70.5
MD05G1314600 Malus domestica HOM05D005665 ORTHO05D007230 4.2e-131 471.9 333 69.7
SMO364G0702 Selaginella moellendorffii HOM05D005665 ORTHO05D007230 1.8e-129 466.5 312 66.0
AagrBONN_evm.TU.Sc2ySwM_344.2491 Anthoceros agrestis HOM05D005665 ORTHO05D007230 1.3e-127 460.3 309 67.6
Pp3c23_19370 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.1e-127 459.5 311 67.8
Pp3c23_19371 Physcomitrium patens HOM05D005665 ORTHO05D007230 2.1e-127 459.5 311 67.8
DCAR_004082 Daucus carota HOM05D005665 ORTHO05D007230 1.2e-122 443.7 251 81.7
AagrBONN_evm.TU.Sc2ySwM_344.2084 Anthoceros agrestis HOM05D005665 ORTHO05D007230 2.0e-117 426.4 311 62.1
CSS0037689 Camellia sinensis var. sinensis HOM05D005665 ORTHO05D007230 9.7e-112 407.5 226 87.2
MCO04G319 Micromonas commoda HOM05D005665 ORTHO05D007230 7.4e-104 381.3 315 58.1
CDE02G1299 Ceratophyllum demersum HOM05D005665 ORTHO05D007230 1.6e-98 363.6 243 71.2
unitig_21.g20852 Utricularia gibba HOM05D005665 ORTHO05D007230 1.2e-93 347.4 214 76.2
PRCOL_00001033 Prasinoderma coloniale HOM05D005665 ORTHO05D007230 6.7e-89 331.6 313 50.8
Cfa021982 Carpinus fangiana HOM05D005665 ORTHO05D007230 1.2e-82 310.8 352 44.3
Haze_26717 Corylus avellana HOM05D005665 ORTHO05D007230 4.1e-70 269.2 360 40.3
Thecc.05G195100 Theobroma cacao HOM05D005665 ORTHO05D007230 2.0e-53 213.8 123 78.0
Dinv40542 Davidia involucrata HOM05D005665 ORTHO05D007230 1.2e-29 134.8 82 80.5
MELO3C007292.2 Cucumis melo HOM05D005665 ORTHO05D039877 3.5e-29 133.3 89 73.0
TAR629G1936 Trochodendron aralioides HOM05D000151 ORTHO05D000074 6.4e-23 112.5 84 69.0
BcaB05g23333 Brassica carinata HOM05D005665 ORTHO05D039877 4.3e-19 99.8 68 69.1
DCAR_004083 Daucus carota HOM05D000799 ORTHO05D000629 1.2e-13 81.6 44 79.5
Zm00001eb423550 Zea mays HOM05D005665 ORTHO05D007230 1.8e-12 77.8 41 82.9
Thecc.05G194800 Theobroma cacao HOM05D005665 ORTHO05D007230 3.9e-12 76.6 64 59.4
Zm00001eb175420 Zea mays HOM05D005665 ORTHO05D007230 1.1e-11 75.1 45 77.8
SEGI_41581 Sequoiadendron giganteum HOM05D005665 ORTHO05D007230 6.4e-07 59.3 44 54.5


User provided reference genes

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