Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1133 Cannabis sativa HOM05D004264 ORTHO05D004680 1.0e-103 380.2 201 100.0
TWI74G1571 Tripterygium wilfordii HOM05D004264 ORTHO05D004680 7.0e-57 224.6 198 57.1
Cfa017136 Carpinus fangiana HOM05D004264 ORTHO05D004680 1.0e-55 220.7 201 56.2
CiPaw.09G213400 Carya illinoinensis HOM05D004264 ORTHO05D004680 2.9e-55 219.2 200 56.0
Atru.chr8.2305 Acer truncatum HOM05D004264 ORTHO05D004680 1.1e-54 217.2 200 56.5
Manes.09G110101 Manihot esculenta HOM05D004264 ORTHO05D004680 5.6e-54 214.9 198 57.1
Gohir.D01G219000 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.4e-52 210.3 200 55.0
Thecc.05G009200 Theobroma cacao HOM05D004264 ORTHO05D004680 2.3e-52 209.5 200 54.5
Hma1.2p1_0479F.1_g161540 Hydrangea macrophylla HOM05D004264 ORTHO05D004680 5.8e-51 204.9 198 54.5
CsaV3_4G026470 Cucumis sativus L. HOM05D004264 ORTHO05D004680 3.7e-50 202.2 200 50.0
Gorai.002G265700 Gossypium raimondii HOM05D004264 ORTHO05D004680 6.4e-50 201.4 200 53.0
Dinv08428 Davidia involucrata HOM05D004264 ORTHO05D008966 1.1e-49 200.7 198 53.0
Duzib093G0558 Durio zibethinus HOM05D004264 ORTHO05D004680 1.4e-49 200.3 201 54.2
Duzib106G1969 Durio zibethinus HOM05D004264 ORTHO05D004680 1.4e-49 200.3 200 55.0
Gohir.A01G229100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.4e-49 200.3 200 53.0
ClCG04G006790 Citrullus lanatus HOM05D004264 ORTHO05D004680 2.4e-49 199.5 200 51.0
Actinidia29078 Actinidia chinensis HOM05D004264 ORTHO05D004680 3.2e-49 199.1 201 52.7
FAN09G4226 Fragaria x ananassa HOM05D004264 ORTHO05D004680 5.4e-49 198.4 198 51.5
Potri.016G122350 Populus trichocarpa HOM05D004264 ORTHO05D004680 7.0e-49 198.0 198 51.5
PGR004G2045 Punica granatum HOM05D004264 ORTHO05D004680 9.2e-49 197.6 198 52.5
TAR623G1256 Trochodendron aralioides HOM05D004264 ORTHO05D004680 1.2e-48 197.2 198 49.0
FAN05G3264 Fragaria x ananassa HOM05D004264 ORTHO05D004680 1.6e-48 196.8 198 52.0
FAN02G3507 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.7e-48 196.1 198 52.0
FAN05G1725 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.7e-48 196.1 198 52.0
FAN05G1746 Fragaria x ananassa HOM05D004264 ORTHO05D004680 2.7e-48 196.1 198 52.0
COL.COLO4_14480 Corchorus olitorius HOM05D004264 ORTHO05D004680 5.0e-47 191.8 200 51.0
Actinidia11558 Actinidia chinensis HOM05D004264 ORTHO05D004680 1.1e-46 190.7 199 51.8
MD12G1177600 Malus domestica HOM05D004264 ORTHO05D004680 2.5e-46 189.5 202 54.0
Solyc04g072210.4 Solanum lycopersicum HOM05D004264 ORTHO05D004680 2.5e-46 189.5 198 50.5
Nn8g40771 Nelumbo nucifera HOM05D004264 ORTHO05D004680 1.6e-45 186.8 197 46.7
PSO801G0087 Papaver somniferum HOM05D004264 ORTHO05D004680 1.6e-45 186.8 202 49.5
THA.LOC104816187 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 6.2e-45 184.9 198 47.5
PSO339G3729 Papaver somniferum HOM05D004264 ORTHO05D004680 8.0e-45 184.5 202 48.0
MD04G1163700 Malus domestica HOM05D004264 ORTHO05D004680 1.1e-44 184.1 190 53.7
Hund14916 Selenicereus undatus HOM05D004264 ORTHO05D004680 2.3e-44 183.0 198 48.0
Sed0006342 Sechium edule HOM05D004264 ORTHO05D004680 3.1e-44 182.6 200 46.0
Sp3g07270 Schrenkiella parvula HOM05D004264 ORTHO05D004680 5.8e-43 178.3 198 44.9
THA.LOC104827057 Tarenaya hassleriana HOM05D004264 ORTHO05D004680 9.8e-43 177.6 199 46.7
AL3G19870 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.1e-41 174.1 198 43.9
AT3G08880 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 1.1e-41 174.1 198 42.9
CARHR083200 Cardamine hirsuta HOM05D004264 ORTHO05D004680 1.4e-41 173.7 201 43.3
Lj3g0014192 Lotus japonicus HOM05D004264 ORTHO05D004680 2.4e-41 172.9 201 46.8
Lsat_1_v5_gn_6_104820 Lactuca sativa HOM05D004264 ORTHO05D004680 3.2e-41 172.6 199 48.2
VMungo1383G0816 Vigna mungo HOM05D004264 ORTHO05D004680 4.1e-41 172.2 198 47.0
Glyma.18G205200 Glycine max HOM05D004264 ORTHO05D004680 2.1e-40 169.9 202 44.1
ECA233G6002 Erigeron canadensis HOM05D004264 ORTHO05D004680 3.5e-40 169.1 184 47.3
Glyma.07G154451 Glycine max HOM05D004264 ORTHO05D004680 1.3e-39 167.2 202 45.0
DCAR_015367 Daucus carota HOM05D004264 ORTHO05D004680 3.9e-39 165.6 198 44.9
Carub.0003s0799 Capsella rubella HOM05D004264 ORTHO05D004680 8.1e-37 157.9 198 40.4
Phvul.008G094300 Phaseolus vulgaris HOM05D004264 ORTHO05D004680 8.1e-37 157.9 216 43.1
AL6G10480 Arabidopsis lyrata HOM05D004264 ORTHO05D004680 1.4e-36 157.1 198 40.4
Lalb_Chr01g0023271 Lupinus albus HOM05D004264 ORTHO05D004680 1.8e-36 156.8 197 43.7
Medtr1g100900 Medicago truncatula HOM05D004264 ORTHO05D004680 1.5e-35 153.7 202 42.6
MBI10_g27417_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 2.2e-34 149.8 199 41.7
BcaC09g47997 Brassica carinata HOM05D004264 ORTHO05D004680 2.9e-34 149.4 199 38.7
Carub.0006s0026 Capsella rubella HOM05D004264 ORTHO05D004680 2.9e-34 149.4 198 38.4
BcaC09g48040 Brassica carinata HOM05D004264 ORTHO05D004680 1.9e-33 146.7 198 37.9
BNapus_Darmor_BZH_scaffold_167p00190 Brassica napus HOM05D004264 ORTHO05D004680 1.9e-33 146.7 198 37.9
Thhalv10021618m.g Eutrema salsugineum HOM05D004264 ORTHO05D004680 3.2e-33 146.0 198 37.4
Psat3g124240 Pisum sativum HOM05D004264 ORTHO05D004680 1.2e-32 144.1 198 41.4
BraA01t04327Z Brassica rapa HOM05D004264 ORTHO05D004680 2.1e-32 143.3 198 36.9
VMungo1383G0682 Vigna mungo HOM05D004264 ORTHO05D004680 7.8e-32 141.4 273 34.8
SEGI_36861 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.6e-30 135.2 199 37.7
Ah.12g058940 Amaranthus hybridus HOM05D004264 ORTHO05D004680 1.1e-28 131.0 198 39.4
AT5G01570 Arabidopsis thaliana HOM05D004264 ORTHO05D004680 2.0e-27 126.7 197 37.1
AUR62030782 Chenopodium quinoa HOM05D004264 ORTHO05D004680 4.4e-27 125.6 198 36.9
AUR62030512 Chenopodium quinoa HOM05D004264 ORTHO05D004680 5.8e-27 125.2 198 37.4
BcaB04g18563 Brassica carinata HOM05D004264 ORTHO05D004680 2.2e-26 123.2 197 36.0
Sabra16G0118000 Salix brachista HOM05D004264 ORTHO05D004680 6.4e-26 121.7 194 37.6
QL07p034201 Quercus lobata HOM05D004264 ORTHO05D004680 4.2e-25 119.0 107 58.9
EL10Ac5g12510 Beta vulgaris HOM05D004264 ORTHO05D004680 5.4e-25 118.6 201 33.8
Haze_21059 Corylus avellana HOM05D004264 ORTHO05D004680 1.7e-23 113.6 107 56.1
Zm00001eb068100 Zea mays HOM05D004264 ORTHO05D004680 1.7e-23 113.6 196 33.2
Zm00001eb423320 Zea mays HOM05D004264 ORTHO05D004680 3.0e-23 112.8 158 39.9
MBI03_g10315_MAGBIO Magnolia biondii HOM05D004264 ORTHO05D004680 1.1e-22 110.9 188 36.2
Sc09g0006620 Simmondsia chinensis HOM05D004264 ORTHO05D004680 2.5e-22 109.8 148 40.5
Rhsim05G0223700 Rhododendron simsii HOM05D004264 ORTHO05D004680 1.2e-21 107.5 92 55.4
Prupe.6G283000 Prunus persica HOM05D004264 ORTHO05D004680 2.8e-21 106.3 107 54.2
Peaxi162Scf00522g00315 Petunia axillaris HOM05D004264 ORTHO05D004680 2.4e-20 103.2 155 40.6
RcHm_v2.0_Chr3g0462181 Rosa chinensis HOM05D004264 ORTHO05D004680 2.4e-20 103.2 107 54.2
RcHm_v2.0_Chr3g0462171 Rosa chinensis HOM05D004264 ORTHO05D004680 3.1e-20 102.8 86 57.0
FAN14G2539 Fragaria x ananassa HOM05D004264 ORTHO05D004680 4.0e-20 102.4 107 50.5
GSVIVG01030301001 Vitis vinifera HOM05D004264 ORTHO05D004680 4.0e-20 102.4 107 50.5
vmacro20314 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 5.3e-20 102.1 107 50.5
FvH4_6g10920 Fragaria vesca HOM05D004264 ORTHO05D004680 6.9e-20 101.7 107 50.5
Cc05_g01720 Coffea canephora HOM05D004264 ORTHO05D004680 9.0e-20 101.3 194 33.0
C03p43950 Brassica napus HOM05D004264 ORTHO05D004680 2.0e-19 100.1 183 35.5
Ciclev10013172m.g Citrus clementina HOM05D004264 ORTHO05D004680 2.6e-19 99.8 107 50.5
FvH4_6g10921 Fragaria vesca HOM05D004264 ORTHO05D004680 3.4e-19 99.4 86 53.5
Aa31LG1G23180 Aethionema arabicum HOM05D004264 ORTHO05D004680 4.4e-19 99.0 169 37.9
Cpa.g.sc120.22 Carica papaya HOM05D004264 ORTHO05D004680 1.3e-18 97.4 113 49.6
Gohir.D11G227700 Gossypium hirsutum HOM05D004264 ORTHO05D004680 3.8e-18 95.9 107 51.4
TAR209G0008 Trochodendron aralioides HOM05D004264 ORTHO05D004680 3.8e-18 95.9 108 49.1
Gohir.D10G240300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 8.4e-18 94.7 107 51.4
Gorai.011G276000 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.1e-17 94.4 107 51.4
Eucgr.G00894 Eucalyptus grandis HOM05D004264 ORTHO05D004680 2.4e-17 93.2 107 47.7
Oeu005191.1 Olea europaea HOM05D004264 ORTHO05D004680 5.4e-17 92.0 58 72.4
vmacro05245 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 5.4e-17 92.0 107 47.7
vmacro05226 Vaccinium macrocarpon HOM05D004264 ORTHO05D004680 1.2e-16 90.9 107 46.7
CSS0010779 Camellia sinensis var. sinensis HOM05D004264 ORTHO05D004680 2.1e-16 90.1 74 62.2
Rhsim05G0223600 Rhododendron simsii HOM05D004264 ORTHO05D004680 2.1e-16 90.1 107 47.7
arahy.Tifrunner.gnm1.ann1.IC5F1T Arachis hypogaea HOM05D004264 ORTHO05D004680 4.6e-16 89.0 79 50.6
unitig_0.g2545 Utricularia gibba HOM05D004264 ORTHO05D004680 4.6e-16 89.0 139 41.0
arahy.Tifrunner.gnm1.ann1.G0I7HS Arachis hypogaea HOM05D004264 ORTHO05D004680 6.0e-16 88.6 79 50.6
HanXRQChr02g0036811 Helianthus annuus HOM05D004264 ORTHO05D004680 6.0e-16 88.6 107 46.7
DCAR_018676 Daucus carota HOM05D004264 ORTHO05D004680 1.0e-15 87.8 107 45.8
PGSC0003DMG400031135 Solanum tuberosum HOM05D004264 ORTHO05D004680 1.0e-15 87.8 55 69.1
HanXRQChr02g0036821 Helianthus annuus HOM05D004264 ORTHO05D004680 2.3e-15 86.7 60 58.3
BolC1t05486H Brassica oleracea HOM05D004264 ORTHO05D004680 2.5e-14 83.2 108 45.4
Sopen04g028370 Solanum pennellii HOM05D004264 ORTHO05D004680 3.3e-14 82.8 107 42.1
VMungo1215G3396 Vigna mungo HOM05D004264 ORTHO05D004680 3.3e-14 82.8 59 59.3
Aqoxy3G03064 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 5.6e-14 82.0 94 39.4
MELO3C026013.2 Cucumis melo HOM05D004264 ORTHO05D004680 9.6e-14 81.3 107 42.1
Potri.012G107200 Populus trichocarpa HOM05D004264 ORTHO05D004680 9.6e-14 81.3 57 64.9
HanXRQChr13g0390241 Helianthus annuus HOM05D004264 ORTHO05D004680 1.3e-13 80.9 107 44.9
HanXRQChr13g0390251 Helianthus annuus HOM05D004264 ORTHO05D004680 1.3e-13 80.9 62 54.8
Haze_21060 Corylus avellana HOM05D004264 ORTHO05D004680 1.6e-13 80.5 114 43.0
Aqoxy3G03065 Aquilegia oxysepala HOM05D004264 ORTHO05D004680 2.1e-13 80.1 99 45.5
Gohir.D01G029100 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.1e-13 80.1 79 53.2
Gohir.D04G142200 Gossypium hirsutum HOM05D004264 ORTHO05D004680 2.8e-13 79.7 79 53.2
TPR.G1155 Trifolium pratense HOM05D004264 ORTHO05D004680 4.8e-13 79.0 68 51.5
Gohir.D12G051300 Gossypium hirsutum HOM05D004264 ORTHO05D004680 1.4e-12 77.4 79 51.9
SEGI_24150 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 1.4e-12 77.4 89 40.4
Cpa.g.sc82.40 Carica papaya HOM05D004264 ORTHO05D004680 2.4e-12 76.6 101 45.5
Ca_07679_v3 Cicer arietinum L. HOM05D004264 ORTHO05D004680 2.4e-12 76.6 58 56.9
Gorai.004G074900 Gossypium raimondii HOM05D004264 ORTHO05D004680 3.1e-12 76.3 125 41.6
MSTRG.5553 Avicennia marina HOM05D004264 ORTHO05D004680 9.0e-12 74.7 107 39.3
Oeu041877.1 Olea europaea HOM05D004264 ORTHO05D004680 1.5e-11 73.9 51 66.7
Oeu041878.1 Olea europaea HOM05D004264 ORTHO05D004680 1.5e-11 73.9 51 66.7
Gorai.004G095600 Gossypium raimondii HOM05D004264 ORTHO05D004680 2.0e-11 73.6 86 48.8
DCAR_018675 Daucus carota HOM05D004264 ORTHO05D004680 5.8e-11 72.0 56 60.7
BcaB04g18568 Brassica carinata HOM05D004264 ORTHO05D004680 1.9e-09 67.0 126 33.3
BcaC01g04201 Brassica carinata HOM05D004264 ORTHO05D004680 1.9e-09 67.0 126 33.3
PSO782G0806 Papaver somniferum HOM05D004264 ORTHO05D004680 2.4e-09 66.6 75 42.7
Migut.J00116 Erythranthe guttata HOM05D004264 ORTHO05D004680 5.4e-09 65.5 55 61.8
Gorai.011G076200 Gossypium raimondii HOM05D004264 ORTHO05D004680 1.2e-08 64.3 73 49.3
Os04g0445400 Oryza sativa ssp. japonica HOM05D004264 ORTHO05D004680 2.7e-08 63.2 181 23.8
unitig_88.g27662 Utricularia gibba HOM05D004264 ORTHO05D004680 1.0e-07 61.2 175 28.0
Migut.J00117 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.3e-07 60.8 107 36.4
CAN.G564.4 Capsicum annuum HOM05D004264 ORTHO05D004680 2.3e-07 60.1 78 46.2
SMO364G0587 Selaginella moellendorffii HOM05D004264 ORTHO05D004680 2.3e-07 60.1 94 31.9
BcaNung00021 Brassica carinata HOM05D004264 ORTHO05D004680 3.0e-07 59.7 106 37.7
A03p36330 Brassica napus HOM05D004264 ORTHO05D004680 3.0e-07 59.7 105 38.1
SEGI_29872 Sequoiadendron giganteum HOM05D004264 ORTHO05D004680 5.1e-07 58.9 105 35.2
Migut.D01629 Erythranthe guttata HOM05D004264 ORTHO05D004680 1.1e-06 57.8 107 33.6
BraA03t12802Z Brassica rapa HOM05D004264 ORTHO05D004680 2.5e-06 56.6 105 37.1


User provided reference genes

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