Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G1037 Cannabis sativa HOM05D004920 ORTHO05D005998 5.3e-139 497.7 250 100.0
Cfa000557 Carpinus fangiana HOM05D004920 ORTHO05D005998 5.6e-104 381.3 248 74.6
Haze_06318 Corylus avellana HOM05D004920 ORTHO05D005998 5.6e-104 381.3 248 75.0
CiPaw.09G066500 Carya illinoinensis HOM05D004920 ORTHO05D005998 1.6e-103 379.8 251 75.7
Dinv40630 Davidia involucrata HOM05D004920 ORTHO05D005998 5.8e-101 371.3 246 74.8
MD05G1306300 Malus domestica HOM05D004920 ORTHO05D005998 5.8e-101 371.3 250 72.0
ClCG01G023480 Citrullus lanatus HOM05D004920 ORTHO05D005998 2.2e-100 369.4 242 74.4
Sed0019770 Sechium edule HOM05D004920 ORTHO05D005998 8.3e-100 367.5 250 74.0
GSVIVG01021153001 Vitis vinifera HOM05D004920 ORTHO05D005998 1.4e-99 366.7 245 74.3
CsaV3_6G050600 Cucumis sativus L. HOM05D004920 ORTHO05D005998 1.2e-98 363.6 246 73.2
MD10G1285300 Malus domestica HOM05D004920 ORTHO05D005998 1.2e-98 363.6 248 71.4
TAR624G0520 Trochodendron aralioides HOM05D004920 ORTHO05D005998 2.1e-98 362.8 245 72.2
RcHm_v2.0_Chr5g0009901 Rosa chinensis HOM05D004920 ORTHO05D005998 3.5e-98 362.1 250 72.8
Cpa.g.sc80.25 Carica papaya HOM05D004920 ORTHO05D005998 1.0e-97 360.5 244 73.0
Dinv36435 Davidia involucrata HOM05D004920 ORTHO05D005998 1.3e-97 360.1 234 75.2
Duzib235G1063 Durio zibethinus HOM05D004920 ORTHO05D005998 2.5e-96 355.9 248 70.2
Thecc.06G177000 Theobroma cacao HOM05D004920 ORTHO05D005998 4.3e-96 355.1 248 70.2
Nn2g14559 Nelumbo nucifera HOM05D004920 ORTHO05D005998 5.6e-96 354.8 245 70.6
Actinidia07625 Actinidia chinensis HOM05D004920 ORTHO05D005998 7.3e-96 354.4 243 71.6
Eucgr.D00572 Eucalyptus grandis HOM05D004920 ORTHO05D005998 9.5e-96 354.0 208 79.3
TWI38G1999 Tripterygium wilfordii HOM05D004920 ORTHO05D005998 1.2e-95 353.6 212 77.8
Atru.chr10.1743 Acer truncatum HOM05D004920 ORTHO05D005998 2.8e-95 352.4 248 69.8
FvH4_3g08250 Fragaria vesca HOM05D004920 ORTHO05D005998 2.8e-95 352.4 250 69.6
FAN11G1044 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.8e-95 352.4 250 69.6
FAN16G1146 Fragaria x ananassa HOM05D004920 ORTHO05D005998 2.8e-95 352.4 250 69.6
FAN03G1929 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.4e-94 350.1 250 69.2
TPR.G17014 Trifolium pratense HOM05D004920 ORTHO05D005998 1.4e-94 350.1 216 75.0
Potri.004G052200 Populus trichocarpa HOM05D004920 ORTHO05D005998 1.8e-94 349.7 215 76.7
Ciclev10016425m.g Citrus clementina HOM05D004920 ORTHO05D005998 2.3e-94 349.4 248 69.8
Oeu043091.1 Olea europaea HOM05D004920 ORTHO05D005998 3.1e-94 349.0 217 74.2
Cc02_g14330 Coffea canephora HOM05D004920 ORTHO05D005998 5.2e-94 348.2 245 69.0
FvH4_7g02080 Fragaria vesca HOM05D004920 ORTHO05D005998 5.2e-94 348.2 250 68.8
FAN06G4868 Fragaria x ananassa HOM05D004920 ORTHO05D005998 5.2e-94 348.2 250 68.8
Peaxi162Scf00016g00346 Petunia axillaris HOM05D004920 ORTHO05D005998 6.8e-94 347.8 216 75.0
Rhsim02G0138400 Rhododendron simsii HOM05D004920 ORTHO05D005998 8.9e-94 347.4 243 71.2
Gohir.A05G157100 Gossypium hirsutum HOM05D004920 ORTHO05D005998 1.2e-93 347.1 233 71.2
Hma1.2p1_0155F.1_g068520 Hydrangea macrophylla HOM05D004920 ORTHO05D005998 1.2e-93 347.1 253 69.2
Phvul.001G005700 Phaseolus vulgaris HOM05D004920 ORTHO05D005998 1.2e-93 347.1 199 80.4
Sabra04G0033000 Salix brachista HOM05D004920 ORTHO05D005998 1.2e-93 347.1 239 72.4
Peaxi162Scf00367g00049 Petunia axillaris HOM05D004920 ORTHO05D005998 2.0e-93 346.3 247 68.8
Solyc02g031770.4 Solanum lycopersicum HOM05D004920 ORTHO05D005998 2.0e-93 346.3 244 68.9
Lj4g0024893 Lotus japonicus HOM05D004920 ORTHO05D005998 2.6e-93 345.9 247 69.2
Manes.17G051900 Manihot esculenta HOM05D004920 ORTHO05D005998 3.4e-93 345.5 245 71.4
VMungo1127G0753 Vigna mungo HOM05D004920 ORTHO05D005998 4.4e-93 345.1 199 80.9
Glyma.12G114600 Glycine max HOM05D004920 ORTHO05D005998 5.8e-93 344.7 199 80.4
Gohir.D05G160000 Gossypium hirsutum HOM05D004920 ORTHO05D005998 5.8e-93 344.7 248 68.5
Sopen02g010080 Solanum pennellii HOM05D004920 ORTHO05D005998 5.8e-93 344.7 244 68.4
SGA_v2.0_scaffold16G07660 Striga asiatica HOM05D004920 ORTHO05D005998 7.6e-93 344.4 245 67.8
Oeu025561.1 Olea europaea HOM05D004920 ORTHO05D005998 1.3e-92 343.6 242 68.6
Sed0013972 Sechium edule HOM05D004920 ORTHO05D005998 2.9e-92 342.4 246 69.1
Ca_10660_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 3.8e-92 342.0 199 79.9
Gohir.D01G045600 Gossypium hirsutum HOM05D004920 ORTHO05D005998 3.8e-92 342.0 233 70.8
Gorai.002G065200 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.4e-91 340.1 234 70.9
Nitab4.5_0000138g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 1.4e-91 340.1 256 67.2
MSTRG.14155 Avicennia marina HOM05D004920 ORTHO05D005998 1.9e-91 339.7 239 68.2
CAN.G1961.2 Capsicum annuum HOM05D004920 ORTHO05D005998 1.9e-91 339.7 245 68.2
Medtr4g087955 Medicago truncatula HOM05D004920 ORTHO05D005998 2.4e-91 339.3 245 68.2
Aa31LG9G13860 Aethionema arabicum HOM05D004920 ORTHO05D005998 1.2e-90 337.0 247 67.2
Ah.05g178940 Amaranthus hybridus HOM05D004920 ORTHO05D005998 2.7e-90 335.9 246 67.1
PSO541G3866 Papaver somniferum HOM05D004920 ORTHO05D005998 2.7e-90 335.9 249 67.5
TPR.G16259 Trifolium pratense HOM05D004920 ORTHO05D005998 2.7e-90 335.9 220 71.4
Aqoxy1G02218 Aquilegia oxysepala HOM05D004920 ORTHO05D005998 3.5e-90 335.5 252 67.1
DCAR_007975 Daucus carota HOM05D004920 ORTHO05D005998 3.5e-90 335.5 218 73.4
CDE02G3849 Ceratophyllum demersum HOM05D004920 ORTHO05D005998 1.0e-89 334.0 219 73.1
PSO675G0526 Papaver somniferum HOM05D004920 ORTHO05D005998 1.0e-89 334.0 249 67.5
Lsat_1_v5_gn_7_23761 Lactuca sativa HOM05D004920 ORTHO05D005998 1.7e-89 333.2 244 69.3
Lalb_Chr07g0189681 Lupinus albus HOM05D004920 ORTHO05D005998 3.0e-89 332.4 230 70.9
PGR004G0415 Punica granatum HOM05D004920 ORTHO05D005998 3.0e-89 332.4 252 66.3
PGR046G0004 Punica granatum HOM05D004920 ORTHO05D005998 3.0e-89 332.4 252 66.3
Sp4g16400 Schrenkiella parvula HOM05D004920 ORTHO05D005998 3.0e-89 332.4 248 66.5
Thhalv10017133m.g Eutrema salsugineum HOM05D004920 ORTHO05D005998 5.1e-89 331.6 250 65.2
Hund21192 Selenicereus undatus HOM05D004920 ORTHO05D005998 6.6e-89 331.3 250 65.6
AUR62031127 Chenopodium quinoa HOM05D004920 ORTHO05D005998 1.1e-88 330.5 200 77.0
PSO063G1259 Papaver somniferum HOM05D004920 ORTHO05D005998 1.1e-88 330.5 246 65.9
MBI07_g06434_MAGBIO Magnolia biondii HOM05D004920 ORTHO05D005998 1.5e-88 330.1 255 65.9
BcaC02g07783 Brassica carinata HOM05D004920 ORTHO05D005998 1.9e-88 329.7 248 67.3
Rhsim06G0035100 Rhododendron simsii HOM05D004920 ORTHO05D005998 2.5e-88 329.3 257 65.8
EL10Ac1g01008 Beta vulgaris HOM05D004920 ORTHO05D005998 3.3e-88 328.9 206 75.2
A04p26140 Brassica napus HOM05D004920 ORTHO05D005998 3.3e-88 328.9 215 73.0
Migut.M01075 Erythranthe guttata HOM05D004920 ORTHO05D005998 4.3e-88 328.6 245 66.1
HanXRQChr15g0481321 Helianthus annuus HOM05D004920 ORTHO05D005998 5.6e-88 328.2 250 66.4
AL4G29930 Arabidopsis lyrata HOM05D004920 ORTHO05D005998 7.3e-88 327.8 246 65.9
CARHR128130 Cardamine hirsuta HOM05D004920 ORTHO05D005998 7.3e-88 327.8 216 71.3
AUR62014920 Chenopodium quinoa HOM05D004920 ORTHO05D005998 7.3e-88 327.8 203 75.4
Sc17g0005830 Simmondsia chinensis HOM05D004920 ORTHO05D005998 9.6e-88 327.4 247 66.4
AT2G34050 Arabidopsis thaliana HOM05D004920 ORTHO05D005998 1.2e-87 327.0 245 66.1
C04p63520 Brassica napus HOM05D004920 ORTHO05D005998 1.6e-87 326.6 215 72.1
BraA04t18117Z Brassica rapa HOM05D004920 ORTHO05D005998 1.6e-87 326.6 215 72.1
ECA236G4389 Erigeron canadensis HOM05D004920 ORTHO05D005998 1.6e-87 326.6 203 75.9
SGA_v2.0_scaffold341G49353 Striga asiatica HOM05D004920 ORTHO05D005998 2.1e-87 326.2 209 72.7
BcaB02g10610 Brassica carinata HOM05D004920 ORTHO05D005998 3.6e-87 325.5 248 65.7
Carub.0004s1568 Capsella rubella HOM05D004920 ORTHO05D005998 3.6e-87 325.5 244 66.4
THA.LOC104812631 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 4.7e-87 325.1 253 64.8
A05p11610 Brassica napus HOM05D004920 ORTHO05D005998 1.1e-86 323.9 246 65.9
BraA05t20108Z Brassica rapa HOM05D004920 ORTHO05D005998 1.1e-86 323.9 246 65.9
FAN25G0865 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.1e-86 323.9 297 57.6
C04p15060 Brassica napus HOM05D004920 ORTHO05D005998 1.4e-86 323.6 241 66.4
BolC4t27823H Brassica oleracea HOM05D004920 ORTHO05D005998 1.4e-86 323.6 239 66.9
BcaB06g28727 Brassica carinata HOM05D004920 ORTHO05D005998 4.0e-86 322.0 214 71.5
BolC4t23082H Brassica oleracea HOM05D004920 ORTHO05D005998 1.5e-85 320.1 241 65.6
HPP92_018237 Vanilla planifolia HOM05D004920 ORTHO05D005998 2.2e-84 316.2 240 63.8
Lj7P478G59 Lonicera japonica HOM05D004920 ORTHO05D005998 7.3e-80 301.2 169 82.8
MELO3C007238.2 Cucumis melo HOM05D004920 ORTHO05D005998 9.6e-80 300.8 246 64.6
Nitab4.5_0008952g0010 Nicotiana tabacum HOM05D004920 ORTHO05D005998 3.1e-78 295.8 343 48.1
Gorai.009G165000 Gossypium raimondii HOM05D004920 ORTHO05D005998 1.2e-77 293.9 234 62.8
ATR0712G057 Amborella trichopoda HOM05D004920 ORTHO05D005998 3.0e-73 279.3 237 58.6
THA.LOC104814688 Tarenaya hassleriana HOM05D004920 ORTHO05D005998 5.8e-69 265.0 225 62.2
vmacro15953 Vaccinium macrocarpon HOM05D004920 ORTHO05D005998 3.8e-68 262.3 315 48.9
Glyma.06G291400 Glycine max HOM05D004920 ORTHO05D005998 1.2e-66 257.3 145 80.7
FAN21G0445 Fragaria x ananassa HOM05D004920 ORTHO05D005998 1.3e-65 253.8 290 51.0
QL04p069154 Quercus lobata HOM05D004920 ORTHO05D005998 5.6e-64 248.4 134 85.1
BcaB06g28732 Brassica carinata HOM05D004920 ORTHO05D005998 6.9e-62 241.5 188 63.3
Mapoly0023s0159 Marchantia polymorpha HOM05D004920 ORTHO05D005998 1.6e-58 230.3 204 55.9
SEGI_15656 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 2.3e-57 226.5 145 71.7
AagrBONN_evm.TU.Sc2ySwM_228.2942 Anthoceros agrestis HOM05D004920 ORTHO05D005998 1.9e-56 223.4 195 54.4
Pp3c14_19140 Physcomitrium patens HOM05D004920 ORTHO05D005998 1.6e-55 220.3 192 53.6
DCAR_004027 Daucus carota HOM05D004920 ORTHO05D005998 1.2e-53 214.2 202 54.5
Glyma.04G173800 Glycine max HOM05D004920 ORTHO05D005998 5.1e-49 198.7 116 79.3
Prupe.4G056300 Prunus persica HOM05D004920 ORTHO05D005998 5.7e-48 195.3 148 64.9
BcaC01g05809 Brassica carinata HOM05D004920 ORTHO05D005998 3.7e-47 192.6 154 61.7
SMO196G0025 Selaginella moellendorffii HOM05D004920 ORTHO05D005998 3.4e-45 186.0 192 44.3
COL.COLO4_31383 Corchorus olitorius HOM05D004920 ORTHO05D005998 1.7e-44 183.7 103 83.5
BolC3t14602H Brassica oleracea HOM05D004920 ORTHO05D005998 3.8e-44 182.6 169 56.2
SHI18442 Sapria himalayana HOM05D004920 ORTHO05D005998 1.8e-41 173.7 240 42.1
CAN.G160.23 Capsicum annuum HOM05D004920 ORTHO05D005998 1.5e-40 170.6 146 59.6
Cpa.g.sc80.22 Carica papaya HOM05D004920 ORTHO05D005998 2.0e-40 170.2 97 84.5
TAR626G0293 Trochodendron aralioides HOM05D004920 ORTHO05D005998 4.4e-40 169.1 97 79.4
Ca_26043_v3 Cicer arietinum L. HOM05D004920 ORTHO05D005998 7.4e-40 168.3 97 80.4
unitig_60.g25415 Utricularia gibba HOM05D004920 ORTHO05D005998 5.3e-38 162.2 97 78.4
Zm00001eb237640 Zea mays HOM05D004920 ORTHO05D005998 7.9e-34 148.3 147 53.7
Cpa.g.sc12.156 Carica papaya HOM05D004920 ORTHO05D005998 2.3e-33 146.7 84 84.5
Os02g0312700 Oryza sativa ssp. japonica HOM05D004920 ORTHO05D005998 1.3e-28 131.0 84 66.7
Psat4g001400 Pisum sativum HOM05D004920 ORTHO05D005998 2.5e-27 126.7 104 59.6
CBR_g54210 Chara braunii HOM05D004920 ORTHO05D005998 3.6e-26 122.9 100 58.0
BcaB01g03906 Brassica carinata HOM05D004920 ORTHO05D005998 1.4e-25 120.9 180 41.7
BcaNung00861 Brassica carinata HOM05D001872 ORTHO05D001859 1.2e-24 117.9 89 65.2
BolC7t45617H Brassica oleracea HOM05D001872 ORTHO05D001859 1.2e-24 117.9 89 65.2
BcaC04g19340 Brassica carinata HOM05D001872 ORTHO05D005998 1.5e-24 117.5 69 79.7
BcaC05g29287 Brassica carinata HOM05D001911 ORTHO05D001951 2.6e-24 116.7 89 66.3
BolC1t01767H Brassica oleracea HOM05D001872 ORTHO05D005998 2.6e-24 116.7 89 66.3
Cre10.g437050 Chlamydomonas reinhardtii HOM05D004920 ORTHO05D005998 7.5e-24 115.2 184 34.8
C01p18450 Brassica napus HOM05D001872 ORTHO05D001859 9.7e-24 114.8 88 65.9
QL04p069158 Quercus lobata HOM05D004920 ORTHO05D005998 3.5e-21 106.3 90 61.1
PRCOL_00005737 Prasinoderma coloniale HOM05D004920 ORTHO05D005998 7.2e-19 98.6 181 32.6
Medtr1g097870 Medicago truncatula HOM05D004920 ORTHO05D005998 1.2e-18 97.8 99 51.5
Cpa.g.sc80.20 Carica papaya HOM05D009365 ORTHO05D000952 7.0e-14 82.0 49 79.6
Duzib192G0917 Durio zibethinus HOM05D004920 ORTHO05D005998 2.0e-13 80.5 69 55.1
A02p38170 Brassica napus HOM05D011482 ORTHO05D001953 7.7e-13 78.6 44 81.8
BraA02t08794Z Brassica rapa HOM05D001897 ORTHO05D001953 7.7e-13 78.6 44 81.8
MCO09G652 Micromonas commoda HOM05D004920 ORTHO05D005998 3.2e-11 73.2 117 27.4
Oeu062327.1 Olea europaea HOM05D004920 ORTHO05D005998 4.7e-10 69.3 42 78.6
BcaC01g03531 Brassica carinata HOM05D004920 ORTHO05D094784 1.8e-09 67.4 77 45.5
BolC5t34235H Brassica oleracea HOM05D001872 ORTHO05D001859 2.3e-09 67.0 56 57.1
SEGI_14350 Sequoiadendron giganteum HOM05D004920 ORTHO05D005998 8.8e-09 65.1 54 51.9
BcaC01g04260 Brassica carinata HOM05D004920 ORTHO05D010632 1.2e-08 64.7 55 56.4
C03p43360 Brassica napus HOM05D004920 ORTHO05D010632 1.2e-08 64.7 42 71.4
BolC3t16607H Brassica oleracea HOM05D008686 ORTHO05D010632 1.2e-08 64.7 47 66.0
C03p13910 Brassica napus HOM05D004920 ORTHO05D005998 4.4e-08 62.8 40 70.0
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 4.4e-08 62.8 54 55.6
DCAR_032321 Daucus carota HOM05D004920 ORTHO05D005998 9.8e-08 61.6 103 39.8


User provided reference genes

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