Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 0.0e+00 1378.6 711 100.0
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 0.0e+00 1227.6 701 88.6
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 0.0e+00 1224.5 704 87.8
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 0.0e+00 1223.0 700 88.7
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 0.0e+00 1223.0 703 87.1
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 0.0e+00 1219.9 707 87.6
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 0.0e+00 1219.1 699 87.8
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 0.0e+00 1218.0 706 87.3
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1215.3 706 86.8
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 0.0e+00 1214.9 704 87.8
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 0.0e+00 1211.1 705 86.7
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 0.0e+00 1210.3 713 87.1
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 0.0e+00 1209.5 705 87.2
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1209.1 706 87.0
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1206.8 707 87.6
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 0.0e+00 1205.7 704 86.9
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 0.0e+00 1205.3 707 85.9
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 0.0e+00 1205.3 706 85.7
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 0.0e+00 1202.2 708 84.9
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 0.0e+00 1199.1 707 86.7
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1196.8 706 84.7
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 0.0e+00 1196.8 701 86.4
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 0.0e+00 1196.0 706 86.1
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1195.6 707 87.3
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 0.0e+00 1194.1 734 83.4
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 0.0e+00 1193.3 706 85.1
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 0.0e+00 1192.9 707 85.3
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 0.0e+00 1191.4 703 85.8
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 0.0e+00 1191.0 698 86.0
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1189.9 708 85.5
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 0.0e+00 1186.8 713 85.0
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 0.0e+00 1186.4 696 86.1
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 0.0e+00 1186.4 694 86.0
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 0.0e+00 1184.9 708 85.0
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 0.0e+00 1183.3 699 85.4
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 0.0e+00 1181.4 706 83.7
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 0.0e+00 1181.0 707 85.3
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 0.0e+00 1179.9 699 85.4
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1178.3 707 85.4
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1176.0 707 84.7
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1175.6 706 84.6
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 0.0e+00 1174.8 698 84.8
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 0.0e+00 1169.5 700 84.3
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 0.0e+00 1167.9 706 82.7
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 0.0e+00 1166.4 695 84.9
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1161.7 708 83.8
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1160.6 708 83.9
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 0.0e+00 1160.6 708 83.9
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 0.0e+00 1158.7 703 83.6
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 0.0e+00 1155.2 707 82.9
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 0.0e+00 1154.0 689 84.9
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 0.0e+00 1150.6 700 82.4
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 0.0e+00 1149.0 695 83.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 0.0e+00 1147.5 709 80.1
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 0.0e+00 1144.4 709 79.8
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1142.9 706 83.6
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 0.0e+00 1128.2 703 83.1
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 0.0e+00 1127.5 714 81.4
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 0.0e+00 1125.2 702 82.1
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 0.0e+00 1123.2 712 82.0
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 0.0e+00 1120.5 709 78.4
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 0.0e+00 1119.0 709 78.7
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 0.0e+00 1117.1 701 81.5
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 0.0e+00 1110.5 703 81.2
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1110.1 699 80.7
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 0.0e+00 1110.1 699 79.5
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1109.7 699 80.5
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 0.0e+00 1106.7 700 78.7
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1106.7 699 80.3
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 0.0e+00 1106.7 699 79.1
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1106.3 699 80.3
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1106.3 699 80.3
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1104.4 699 80.1
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 0.0e+00 1104.4 700 79.3
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 0.0e+00 1103.6 698 79.5
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1103.2 735 78.2
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 0.0e+00 1101.3 699 79.4
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 0.0e+00 1100.5 655 84.9
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1099.0 700 79.0
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 0.0e+00 1096.3 700 78.7
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 0.0e+00 1095.9 695 79.3
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 0.0e+00 1094.0 698 78.8
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 700 78.6
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 700 78.6
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 0.0e+00 1090.1 700 78.6
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 0.0e+00 1088.9 708 79.7
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 0.0e+00 1087.0 727 79.2
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 0.0e+00 1083.6 699 77.5
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 0.0e+00 1078.9 619 87.7
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 9.7e-312 1072.8 622 87.0
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 5.8e-311 1070.5 700 80.1
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 2.5e-306 1055.0 661 82.5
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.7e-305 1051.6 697 79.8
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.8e-304 1048.9 709 75.7
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 3.0e-304 1048.1 708 77.7
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 9.7e-303 1043.1 700 75.9
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 4.1e-301 1037.7 694 75.4
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 2.9e-299 1031.6 688 75.3
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 4.7e-297 1024.2 657 77.6
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.6e-295 1018.5 689 73.7
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 3.8e-291 1004.6 700 73.7
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 8.5e-291 1003.4 702 74.8
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 1.4e-288 996.1 585 86.5
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 3.1e-285 984.9 700 73.0
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 3.8e-283 978.0 648 75.3
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 5.0e-283 977.6 733 71.9
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 4.1e-277 958.0 570 86.1
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 7.7e-276 953.7 542 89.1
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 8.9e-264 913.7 696 71.1
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 7.8e-260 900.6 732 67.1
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.3e-256 889.0 696 68.0
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 2.1e-241 839.3 526 80.8
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.3e-238 830.1 568 74.6
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.7e-235 819.7 534 78.8
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.0e-227 792.3 448 89.7
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 5.5e-213 745.0 672 57.7
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 4.8e-209 731.9 612 65.2
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.6e-196 689.1 557 68.9
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 5.1e-195 685.3 626 55.9
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.1e-192 675.6 402 85.3
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 5.9e-191 671.8 392 86.7
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 1.2e-175 620.9 518 65.6
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.5e-173 614.0 647 49.8
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.2e-166 590.1 656 48.2
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 1.5e-165 587.4 644 48.4
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.5e-157 560.8 400 75.8
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.7e-140 502.7 642 42.1
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 3.4e-138 496.5 717 43.8
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.3e-137 494.6 661 41.8
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 3.2e-136 490.0 637 42.7
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 5.6e-133 479.2 624 43.4
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.6e-127 459.5 311 72.7
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.2e-108 396.0 399 53.4
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.6e-106 389.0 399 57.4
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.9e-105 387.1 245 81.2
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.7e-89 334.7 219 74.4
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 3.2e-72 277.3 224 67.9
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 8.2e-60 236.1 131 89.3
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 4.7e-55 220.3 171 69.6
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 1.6e-34 152.1 134 54.5
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.1e-31 141.7 78 85.9
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 5.4e-27 127.1 101 62.4
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 5.0e-25 120.6 63 85.7
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 5.6e-24 117.1 92 64.1
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 2.8e-23 114.8 59 88.1
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 3.3e-16 91.3 56 76.8
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 8.1e-15 86.7 62 71.0
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 7.6e-13 80.1 58 70.7
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 7.6e-13 80.1 58 70.7
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 2.9e-12 78.2 54 75.9
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.1e-11 76.3 54 75.9
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.4e-06 58.5 30 76.7


User provided reference genes

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