Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 6.6e-47 190.7 118 100.0
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 7.8e-24 114.0 83 67.5
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 1.3e-23 113.2 88 63.6
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 6.6e-23 110.9 83 65.1
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 8.7e-23 110.5 90 62.2
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 3.3e-22 108.6 83 61.4
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 4.3e-22 108.2 80 68.8
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 7.3e-22 107.5 74 71.6
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.3e-21 106.7 64 79.7
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.6e-21 106.3 64 76.6
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 3.6e-21 105.1 85 62.4
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 6.2e-21 104.4 82 63.4
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 8.1e-21 104.0 82 65.9
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.4e-20 102.4 82 63.4
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 4.0e-20 101.7 83 61.4
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 6.9e-20 100.9 68 67.6
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 1.2e-19 100.1 63 73.0
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.8e-19 97.8 76 61.8
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 9.9e-19 97.1 65 64.6
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 9.9e-19 97.1 64 71.9
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.7e-18 96.3 82 57.3
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.7e-18 96.3 82 57.3
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.7e-18 96.3 86 59.3
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.7e-18 96.3 86 59.3
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 2.9e-18 95.5 68 64.7
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 6.4e-18 94.4 74 59.5
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 8.4e-18 94.0 74 60.8
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.1e-17 93.6 82 56.1
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.1e-17 93.6 80 53.8
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.4e-17 93.2 86 58.1
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.4e-17 92.4 81 55.6
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.2e-17 91.7 83 57.8
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 9.3e-17 90.5 81 55.6
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.7e-16 89.0 70 64.3
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 7.9e-16 87.4 82 50.0
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 3.0e-15 85.5 64 62.5
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 3.0e-15 85.5 82 53.7
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 3.0e-15 85.5 81 53.1
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.7e-15 84.3 81 55.6
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 8.7e-15 84.0 69 59.4
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-14 83.6 80 50.0
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.3e-14 81.6 62 59.7
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.4e-14 80.9 55 67.3
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 7.4e-14 80.9 56 66.1
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 7.4e-14 80.9 56 66.1
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 7.4e-14 80.9 68 52.9
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 7.4e-14 80.9 56 66.1
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.3e-13 80.1 76 51.3
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.6e-13 79.7 54 63.0
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 1.6e-13 79.7 61 60.7
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 2.1e-13 79.3 82 48.8
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 2.1e-13 79.3 64 59.4
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 2.8e-13 79.0 45 73.3
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 2.8e-13 79.0 81 49.4
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 2.8e-13 79.0 45 73.3
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 2.8e-13 79.0 50 74.0
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.8e-13 78.2 80 46.2
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 4.8e-13 78.2 70 58.6
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.8e-13 78.2 56 60.7
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 4.8e-13 78.2 81 48.1
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 6.2e-13 77.8 54 63.0
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 8.1e-13 77.4 64 53.1
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 1.1e-12 77.0 63 55.6
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 1.1e-12 77.0 63 55.6
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.1e-12 77.0 62 54.8
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 1.1e-12 77.0 87 44.8
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.4e-12 76.6 45 71.1
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.4e-12 76.6 45 71.1
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 1.8e-12 76.3 54 57.4
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.8e-12 76.3 44 77.3
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.8e-12 76.3 80 46.2
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 3.1e-12 75.5 44 70.5
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 3.1e-12 75.5 83 45.8
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 3.1e-12 75.5 64 51.6
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.1e-12 75.5 45 68.9
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 4.0e-12 75.1 82 50.0
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 4.0e-12 75.1 76 48.7
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 5.3e-12 74.7 68 51.5
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.3e-12 74.7 56 60.7
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.3e-12 74.7 56 60.7
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 5.3e-12 74.7 45 68.9
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 6.9e-12 74.3 44 72.7
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 6.9e-12 74.3 56 60.7
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 6.9e-12 74.3 82 43.9
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 6.9e-12 74.3 82 43.9
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 9.0e-12 73.9 79 45.6
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.2e-11 73.6 68 54.4
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.2e-11 73.6 60 53.3
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 1.2e-11 73.6 56 58.9
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.2e-11 73.6 64 57.8
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.0e-11 72.8 82 42.7
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 2.0e-11 72.8 80 45.0
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 2.0e-11 72.8 52 63.5
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.6e-11 72.4 56 57.1
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 2.6e-11 72.4 70 51.4
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.6e-11 72.4 75 48.0
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 3.4e-11 72.0 54 59.3
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 4.5e-11 71.6 45 66.7
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 4.5e-11 71.6 56 53.6
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 4.5e-11 71.6 56 58.9
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 4.5e-11 71.6 56 58.9
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.5e-11 71.6 64 53.1
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 5.8e-11 71.2 85 42.4
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.8e-11 71.2 56 57.1
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 5.8e-11 71.2 63 55.6
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 7.6e-11 70.9 83 44.6
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 7.6e-11 70.9 70 48.6
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 7.6e-11 70.9 56 58.9
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 9.9e-11 70.5 69 49.3
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 1.3e-10 70.1 45 71.1
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.3e-10 70.1 52 61.5
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 1.7e-10 69.7 54 59.3
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.7e-10 69.7 54 59.3
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.7e-10 69.7 45 64.4
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 1.7e-10 69.7 75 48.0
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.7e-10 69.7 75 48.0
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.7e-10 69.7 77 45.5
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.9e-10 68.9 51 62.7
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 2.9e-10 68.9 45 71.1
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 2.9e-10 68.9 87 43.7
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 3.8e-10 68.6 45 68.9
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.9e-10 68.2 54 57.4
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 6.4e-10 67.8 44 70.5
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 6.4e-10 67.8 45 68.9
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.4e-10 67.8 45 68.9
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.4e-10 67.8 45 68.9
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 8.4e-10 67.4 84 44.0
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.1e-09 67.0 45 64.4
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.4e-09 66.6 44 63.6
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.9e-09 66.2 56 60.7
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 1.9e-09 66.2 68 50.0
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 2.4e-09 65.9 83 41.0
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.4e-09 65.9 64 48.4
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 3.2e-09 65.5 73 45.2
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.2e-09 65.5 82 43.9
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 4.2e-09 65.1 52 61.5
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 7.1e-09 64.3 45 66.7
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 2.1e-08 62.8 56 51.8
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 2.7e-08 62.4 64 43.8
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 2.7e-08 62.4 64 43.8
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 2.7e-08 62.4 43 58.1
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 3.5e-08 62.0 43 60.5
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 6.0e-08 61.2 68 45.6
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 7.9e-08 60.8 48 54.2
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.8e-07 59.7 35 74.3
SGA_v2.0_scaffold181G39749 Striga asiatica HOM05D002453 ORTHO05D008746 3.0e-07 58.9 79 39.2
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-06 57.0 60 41.7
Os06g0551500 Oryza sativa ssp. japonica HOM05D005007 ORTHO05D006053 1.5e-06 56.6 50 54.0
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.3e-06 55.1 52 51.9
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 9.6e-06 53.9 41 51.2


User provided reference genes

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