Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0891 Cannabis sativa HOM05D005712 ORTHO05D007865 3.2e-187 658.3 337 100.0
QL02p015343 Quercus lobata HOM05D005712 ORTHO05D007865 5.6e-99 365.2 360 60.0
Cfa014126 Carpinus fangiana HOM05D005712 ORTHO05D007865 8.1e-98 361.3 362 58.3
Manes.05G126100 Manihot esculenta HOM05D005712 ORTHO05D007865 2.3e-97 359.8 346 61.3
Dinv31977 Davidia involucrata HOM05D005712 ORTHO05D007865 4.0e-97 359.0 314 64.0
COL.COLO4_07687 Corchorus olitorius HOM05D005712 ORTHO05D007865 1.1e-94 350.9 371 57.1
Potri.002G006300 Populus trichocarpa HOM05D005712 ORTHO05D007865 1.1e-94 350.9 251 74.9
Thecc.08G064200 Theobroma cacao HOM05D005712 ORTHO05D007865 1.9e-94 350.1 362 56.9
Atru.chr13.78 Acer truncatum HOM05D005712 ORTHO05D007865 4.1e-94 349.0 254 73.2
MD06G1005200 Malus domestica HOM05D005712 ORTHO05D007865 4.1e-94 349.0 364 59.1
TWI12G0719 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 4.1e-94 349.0 350 57.1
Ciclev10001686m.g Citrus clementina HOM05D005712 ORTHO05D007865 7.1e-94 348.2 359 57.7
Actinidia15518 Actinidia chinensis HOM05D005712 ORTHO05D007865 1.2e-93 347.4 311 62.4
CsaV3_4G037540 Cucumis sativus L. HOM05D005712 ORTHO05D007865 1.6e-93 347.1 317 59.9
Sabra05G0197900 Salix brachista HOM05D005712 ORTHO05D007865 1.6e-93 347.1 282 66.7
CSS0017080 Camellia sinensis var. sinensis HOM05D005712 ORTHO05D007865 3.5e-93 345.9 312 61.5
Cpa.g.sc26.149 Carica papaya HOM05D005712 ORTHO05D007865 3.5e-93 345.9 361 57.1
CiPaw.07G134700 Carya illinoinensis HOM05D005712 ORTHO05D007865 3.5e-93 345.9 359 56.8
Potri.005G255300 Populus trichocarpa HOM05D005712 ORTHO05D007865 7.8e-93 344.7 355 57.5
GSVIVG01013413001 Vitis vinifera HOM05D005712 ORTHO05D007865 7.8e-93 344.7 301 64.8
Duzib116G0237 Durio zibethinus HOM05D005712 ORTHO05D007865 1.7e-92 343.6 313 62.0
Actinidia17068 Actinidia chinensis HOM05D005712 ORTHO05D007865 3.9e-92 342.4 356 56.5
TWI56G0384 Tripterygium wilfordii HOM05D005712 ORTHO05D007865 3.9e-92 342.4 355 57.7
MELO3C017048.2 Cucumis melo HOM05D005712 ORTHO05D007865 1.9e-91 340.1 318 59.1
Haze_22847 Corylus avellana HOM05D005712 ORTHO05D007865 1.1e-89 334.3 405 51.1
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.4e-89 334.0 363 54.8
Aqoxy6G01560 Aquilegia oxysepala HOM05D005712 ORTHO05D007865 4.0e-89 332.4 333 56.8
RcHm_v2.0_Chr7g0216471 Rosa chinensis HOM05D005712 ORTHO05D007865 4.0e-89 332.4 364 56.6
Gohir.A05G177700 Gossypium hirsutum HOM05D005712 ORTHO05D007865 1.2e-88 330.9 320 60.3
FAN18G0352 Fragaria x ananassa HOM05D005712 ORTHO05D007865 1.5e-88 330.5 334 57.8
Nn5g31025 Nelumbo nucifera HOM05D005712 ORTHO05D007865 1.5e-88 330.5 349 57.6
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 2.0e-88 330.1 238 69.7
FAN13G2028 Fragaria x ananassa HOM05D005712 ORTHO05D007865 9.9e-88 327.8 334 57.5
Glyma.06G015100 Glycine max HOM05D005712 ORTHO05D007865 1.7e-87 327.0 250 66.4
TAR625G0170 Trochodendron aralioides HOM05D005712 ORTHO05D007865 1.7e-87 327.0 337 57.9
TAR381G1666 Trochodendron aralioides HOM05D005712 ORTHO05D007865 2.9e-87 326.2 268 64.9
Gohir.D05G181100 Gossypium hirsutum HOM05D005712 ORTHO05D007865 6.4e-87 325.1 320 60.0
Gorai.009G186100 Gossypium raimondii HOM05D005712 ORTHO05D007865 6.4e-87 325.1 320 60.0
Sed0012463 Sechium edule HOM05D005712 ORTHO05D007865 8.4e-87 324.7 301 59.1
MBI05_g08201_MAGBIO Magnolia biondii HOM05D005712 ORTHO05D007865 1.4e-86 323.9 248 69.0
Ah.00g001120 Amaranthus hybridus HOM05D005712 ORTHO05D007865 1.9e-86 323.6 247 68.0
Hma1.2p1_0699F.1_g205630 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 4.1e-86 322.4 341 54.8
FAN04G3045 Fragaria x ananassa HOM05D005712 ORTHO05D007865 7.1e-86 321.6 349 54.4
vmacro21777 Vaccinium macrocarpon HOM05D005712 ORTHO05D007865 1.6e-85 320.5 324 57.1
AUR62024105 Chenopodium quinoa HOM05D005712 ORTHO05D007865 2.7e-85 319.7 235 68.9
Cc10_g00320 Coffea canephora HOM05D005712 ORTHO05D007865 2.7e-85 319.7 373 51.5
FAN08G0897 Fragaria x ananassa HOM05D005712 ORTHO05D007865 2.7e-85 319.7 337 56.1
Oeu004544.1 Olea europaea HOM05D005712 ORTHO05D007865 2.7e-85 319.7 231 70.1
Migut.N02981 Erythranthe guttata HOM05D005712 ORTHO05D007865 4.6e-85 318.9 276 62.3
Phvul.009G007500 Phaseolus vulgaris HOM05D005712 ORTHO05D007865 4.6e-85 318.9 302 59.3
MSTRG.22087 Avicennia marina HOM05D005712 ORTHO05D007865 7.8e-85 318.2 241 69.7
ClCG11G018940 Citrullus lanatus HOM05D005712 ORTHO05D007865 1.3e-84 317.4 337 52.8
VMungo1309G2122 Vigna mungo HOM05D005712 ORTHO05D007865 1.3e-84 317.4 208 76.9
CDE04G2669 Ceratophyllum demersum HOM05D005712 ORTHO05D007865 1.7e-84 317.0 274 62.4
THA.LOC104813742 Tarenaya hassleriana HOM05D005712 ORTHO05D007865 1.7e-84 317.0 332 55.7
PGSC0003DMG400000968 Solanum tuberosum HOM05D005712 ORTHO05D007865 3.9e-84 315.8 245 67.8
CAN.G36.16 Capsicum annuum HOM05D005712 ORTHO05D007865 5.1e-84 315.5 245 68.2
Lj4C5T14 Lonicera japonica HOM05D005712 ORTHO05D007865 5.1e-84 315.5 301 59.1
Nitab4.5_0004637g0020 Nicotiana tabacum HOM05D005712 ORTHO05D007865 5.1e-84 315.5 245 67.8
PSO541G4707 Papaver somniferum HOM05D005712 ORTHO05D007865 6.6e-84 315.1 338 54.7
Glyma.04G015100 Glycine max HOM05D005712 ORTHO05D007865 1.1e-83 314.3 250 64.8
Nitab4.5_0000486g0150 Nicotiana tabacum HOM05D005712 ORTHO05D007865 1.1e-83 314.3 245 67.8
Sopen08g012540 Solanum pennellii HOM05D005712 ORTHO05D007865 1.5e-83 313.9 239 68.6
CARHR021260 Cardamine hirsuta HOM05D005712 ORTHO05D007865 1.9e-83 313.5 352 52.6
Lj1g0001697 Lotus japonicus HOM05D005712 ORTHO05D007865 1.9e-83 313.5 323 56.3
PSO675G3648 Papaver somniferum HOM05D005712 ORTHO05D007865 4.3e-83 312.4 337 53.7
Hund05083 Selenicereus undatus HOM05D005712 ORTHO05D007865 5.6e-83 312.0 323 56.7
Prupe.5G006400 Prunus persica HOM05D005712 ORTHO05D007865 7.3e-83 311.6 292 61.0
Solyc08g042080.3 Solanum lycopersicum HOM05D005712 ORTHO05D007865 7.3e-83 311.6 239 68.2
Thhalv10007995m.g Eutrema salsugineum HOM05D005712 ORTHO05D007865 1.2e-82 310.8 231 68.4
Lalb_Chr23g0265571 Lupinus albus HOM05D005712 ORTHO05D007865 1.2e-82 310.8 236 68.2
DCAR_022990 Daucus carota HOM05D000190 ORTHO05D007865 4.7e-82 308.9 351 51.0
ECA238G0561 Erigeron canadensis HOM05D005712 ORTHO05D007865 4.7e-82 308.9 236 66.5
arahy.Tifrunner.gnm1.ann1.CTTM8W Arachis hypogaea HOM05D005712 ORTHO05D007865 6.2e-82 308.5 227 69.6
Ca_15390_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 8.1e-82 308.1 240 67.9
Peaxi162Scf00632g00416 Petunia axillaris HOM05D005712 ORTHO05D007865 8.1e-82 308.1 267 64.8
RcHm_v2.0_Chr4g0410601 Rosa chinensis HOM05D005712 ORTHO05D007865 1.1e-81 307.8 264 63.6
AT1G20830 Arabidopsis thaliana HOM05D005712 ORTHO05D007865 1.4e-81 307.4 231 68.0
HanXRQChr06g0185301 Helianthus annuus HOM05D005712 ORTHO05D007865 1.8e-81 307.0 304 55.9
Lsat_1_v5_gn_2_2221 Lactuca sativa HOM05D005712 ORTHO05D007865 2.4e-81 306.6 332 53.6
EL10Ac1g01884 Beta vulgaris HOM05D005712 ORTHO05D007865 3.1e-81 306.2 373 51.2
AL1G33850 Arabidopsis lyrata HOM05D005712 ORTHO05D007865 4.0e-81 305.8 231 67.5
Eucgr.F03584 Eucalyptus grandis HOM05D005712 ORTHO05D007865 4.0e-81 305.8 324 54.3
Sp1g18530 Schrenkiella parvula HOM05D005712 ORTHO05D007865 6.8e-81 305.1 231 67.1
SGA_v2.0_scaffold54G19632 Striga asiatica HOM05D005712 ORTHO05D007865 1.2e-80 304.3 324 55.2
FvH4_5g25940 Fragaria vesca HOM05D005712 ORTHO05D007865 1.5e-80 303.9 284 59.9
AUR62035160 Chenopodium quinoa HOM05D005712 ORTHO05D007865 2.0e-80 303.5 204 73.5
Ca_29628_v3 Cicer arietinum L. HOM05D005712 ORTHO05D007865 2.0e-80 303.5 204 74.0
Aa31LG7G4990 Aethionema arabicum HOM05D005712 ORTHO05D007865 4.4e-80 302.4 238 68.1
SalBow6G6969 Salvia bowleyana HOM05D005712 ORTHO05D007865 4.4e-80 302.4 368 51.1
Carub.0001s2029 Capsella rubella HOM05D005712 ORTHO05D007865 5.8e-80 302.0 301 55.8
BcaC05g25986 Brassica carinata HOM05D005712 ORTHO05D007865 1.7e-79 300.4 244 64.3
C05p19380 Brassica napus HOM05D005712 ORTHO05D007865 1.7e-79 300.4 244 64.3
Medtr3g116050 Medicago truncatula HOM05D005712 ORTHO05D007865 2.9e-79 299.7 232 65.5
BcaB03g12849 Brassica carinata HOM05D005712 ORTHO05D007865 1.1e-78 297.7 278 57.6
A06p16820 Brassica napus HOM05D005712 ORTHO05D007865 1.4e-78 297.4 234 64.5
BraA06t24791Z Brassica rapa HOM05D005712 ORTHO05D007865 1.4e-78 297.4 234 64.5
BcaB07g32078 Brassica carinata HOM05D005712 ORTHO05D007865 4.2e-78 295.8 242 63.6
BolC5t30641H Brassica oleracea HOM05D005712 ORTHO05D007865 4.2e-78 295.8 245 64.1
TPR.G38133 Trifolium pratense HOM05D005712 ORTHO05D007865 8.7e-76 288.1 266 57.9
arahy.Tifrunner.gnm1.ann1.16JRKN Arachis hypogaea HOM05D005712 ORTHO05D007865 1.5e-75 287.3 177 79.1
Hma1.2p1_0699F.1_g205640 Hydrangea macrophylla HOM05D005712 ORTHO05D007865 4.8e-74 282.3 201 70.1
ATR0807G100 Amborella trichopoda HOM05D005712 ORTHO05D007865 8.1e-74 281.6 232 63.8
unitig_22.g5745 Utricularia gibba HOM05D005712 ORTHO05D007865 3.4e-72 276.2 237 65.8
Psat5g008680 Pisum sativum HOM05D005712 ORTHO05D007865 1.3e-68 264.2 177 73.4
HPP92_022548 Vanilla planifolia HOM05D005712 ORTHO05D007865 2.2e-63 246.9 216 60.6
Cpa.g.sc26.148 Carica papaya HOM05D005712 ORTHO05D007865 6.0e-61 238.8 156 76.9
SEGI_27803 Sequoiadendron giganteum HOM05D005712 ORTHO05D007865 2.3e-60 236.9 213 56.8
Zm00001eb072780 Zea mays HOM05D005712 ORTHO05D007865 7.4e-59 231.9 261 51.0
Zm00001eb428100 Zea mays HOM05D005712 ORTHO05D007865 2.1e-58 230.3 254 50.4
Os04g0584900 Oryza sativa ssp. japonica HOM05D005712 ORTHO05D007865 1.1e-57 228.0 242 49.6
SMO276G0054 Selaginella moellendorffii HOM05D005712 ORTHO05D007865 6.7e-52 208.8 276 43.5
AagrBONN_evm.TU.Sc2ySwM_117.1031 Anthoceros agrestis HOM05D005712 ORTHO05D007865 1.5e-51 207.6 174 58.6
Oeu019899.1 Olea europaea HOM05D005712 ORTHO05D007865 5.7e-51 205.7 119 82.4
Mapoly0022s0159 Marchantia polymorpha HOM05D005712 ORTHO05D007865 3.1e-49 199.9 215 50.2
Duzib093G1432 Durio zibethinus HOM05D005712 ORTHO05D007865 9.3e-46 188.3 103 84.5
Pp3c9_6030 Physcomitrium patens HOM05D005712 ORTHO05D007865 3.5e-45 186.4 226 48.2
Pp3c15_5620 Physcomitrium patens HOM05D005712 ORTHO05D007865 3.9e-44 183.0 227 47.1
Cpa.g.c30366.3 Carica papaya HOM05D005712 ORTHO05D007865 7.7e-32 142.1 79 79.7
Cpa.g.c44851 Carica papaya HOM05D005712 ORTHO05D007865 8.5e-31 138.7 69 87.0
Oeu019902.1 Olea europaea HOM05D005712 ORTHO05D007865 1.5e-22 111.3 200 40.0
A07p15460 Brassica napus HOM05D005712 ORTHO05D007865 1.0e-15 88.6 58 72.4
BolC8t49668H Brassica oleracea HOM05D005712 ORTHO05D032168 1.1e-09 68.6 133 33.8
BcaC07g39055 Brassica carinata HOM05D005712 ORTHO05D032168 1.1e-06 58.5 133 33.1
C08p20390 Brassica napus HOM05D005712 ORTHO05D032168 5.5e-06 56.2 133 36.1


User provided reference genes

Program Settings