Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 6.3e-163 577.4 299 100.0
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 5.2e-133 478.0 295 83.1
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 8.9e-133 477.2 296 80.4
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 2.6e-132 475.7 295 82.4
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 5.8e-132 474.6 295 82.0
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 2.2e-131 472.6 296 79.7
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 3.8e-131 471.9 295 82.0
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 4.9e-131 471.5 295 81.4
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 6.4e-131 471.1 295 82.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 8.4e-131 470.7 296 80.4
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 8.4e-131 470.7 296 78.7
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 2.4e-130 469.2 296 82.1
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.2e-130 468.8 296 78.7
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.2e-130 468.8 296 78.7
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 5.4e-130 468.0 295 80.7
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 7.1e-130 467.6 301 80.1
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 7.1e-130 467.6 296 80.7
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 7.1e-130 467.6 295 78.0
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 9.2e-130 467.2 296 80.7
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.6e-129 466.5 295 79.0
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 3.5e-129 465.3 296 80.7
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 6.0e-129 464.5 295 80.0
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 6.0e-129 464.5 295 80.3
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 7.8e-129 464.2 296 77.7
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 7.8e-129 464.2 303 79.2
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 1.0e-128 463.8 303 79.2
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 1.3e-128 463.4 295 80.0
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.7e-128 463.0 295 79.7
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 1.7e-128 463.0 314 74.8
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.0e-128 462.2 314 74.8
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 8.7e-128 460.7 296 79.1
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-127 460.3 295 78.6
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.1e-127 460.3 297 76.8
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 1.5e-127 459.9 295 77.6
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.9e-127 459.5 295 78.6
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 4.3e-127 458.4 295 77.6
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 4.3e-127 458.4 298 76.5
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.6e-127 458.0 295 76.9
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 9.6e-127 457.2 295 78.0
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 2.1e-126 456.1 295 78.0
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 2.8e-126 455.7 295 78.3
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.2e-126 454.5 314 73.9
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 8.1e-126 454.1 295 78.6
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 8.1e-126 454.1 297 76.8
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.1e-125 453.8 295 76.6
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.4e-125 453.4 295 76.6
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.4e-125 452.6 295 78.3
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 4.0e-125 451.8 296 77.0
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 5.2e-125 451.4 296 78.0
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 5.2e-125 451.4 295 76.6
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 6.9e-125 451.1 298 75.8
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 6.9e-125 451.1 296 76.4
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 9.0e-125 450.7 296 76.0
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.2e-124 450.3 295 76.9
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 1.5e-124 449.9 295 77.6
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 2.0e-124 449.5 295 77.3
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 3.4e-124 448.7 295 76.3
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 4.4e-124 448.4 295 76.3
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 9.9e-124 447.2 295 76.6
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 1.7e-123 446.4 295 75.9
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 2.2e-123 446.0 294 75.9
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 3.8e-123 445.3 299 74.2
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 6.4e-123 444.5 295 77.3
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.9e-122 443.0 296 73.6
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 1.9e-122 443.0 339 69.9
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 2.4e-122 442.6 294 75.9
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 2.4e-122 442.6 296 74.3
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.2e-121 440.3 296 75.3
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 2.7e-121 439.1 295 75.9
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 2.7e-121 439.1 299 73.9
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 3.5e-121 438.7 295 74.6
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 4.6e-121 438.3 295 74.2
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.0e-120 437.2 295 75.6
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.0e-120 437.2 295 76.3
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.3e-120 436.8 295 74.9
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 1.7e-120 436.4 295 75.3
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 1.7e-120 436.4 295 74.9
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.7e-120 436.4 298 74.5
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 3.0e-120 435.6 295 74.2
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 5.1e-120 434.9 295 75.9
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 6.6e-120 434.5 295 75.3
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.5e-119 433.3 295 74.2
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.5e-119 433.3 295 74.9
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.5e-119 433.3 295 74.6
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 4.3e-119 431.8 295 73.2
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 9.6e-119 430.6 294 74.1
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 9.6e-119 430.6 295 73.6
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.6e-118 429.9 283 77.0
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 1.6e-118 429.9 271 79.7
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.6e-118 429.9 290 74.1
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 4.8e-118 428.3 283 75.3
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 6.2e-118 427.9 295 74.2
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 6.2e-118 427.9 295 74.2
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 6.2e-118 427.9 298 71.5
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 1.1e-117 427.2 295 74.2
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-117 426.4 296 73.6
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 2.4e-117 426.0 283 75.6
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 4.0e-117 425.2 296 73.3
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 5.3e-117 424.9 278 78.1
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 1.2e-116 423.7 282 75.9
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 1.5e-116 423.3 295 73.9
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 2.6e-116 422.5 295 72.5
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.3e-115 420.2 294 72.8
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 8.4e-115 417.5 266 78.2
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 9.3e-114 414.1 296 71.6
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 3.5e-113 412.1 295 72.2
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 5.1e-112 408.3 247 81.8
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 6.0e-105 384.8 319 63.9
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 3.3e-103 379.0 296 69.9
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 1.3e-102 377.1 296 67.9
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.8e-101 373.2 224 83.0
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 4.6e-97 358.6 236 75.4
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 6.3e-94 348.2 295 62.4
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.2e-92 344.0 295 56.9
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 9.4e-90 334.3 262 61.8
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 2.1e-89 333.2 224 75.4
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 2.7e-89 332.8 224 75.4
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 4.6e-89 332.0 295 56.6
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-88 330.5 280 63.6
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.3e-87 325.9 295 56.9
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 3.7e-86 322.4 291 56.4
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 6.9e-85 318.2 295 55.6
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 3.4e-84 315.8 224 72.8
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 8.5e-83 311.2 296 55.1
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 3.2e-82 309.3 220 69.5
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.6e-81 307.0 269 62.1
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 3.0e-72 276.2 257 55.6
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 1.7e-70 270.4 252 59.1
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.1e-69 267.7 178 77.0
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 9.7e-63 244.6 224 59.8
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 1.1e-61 241.1 150 81.3
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.7e-60 236.5 204 62.3
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.1e-58 231.1 162 68.5
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 1.4e-53 214.2 143 69.2
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 3.5e-52 209.5 150 70.0
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 1.3e-51 207.6 135 75.6
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 2.2e-46 190.3 274 38.7
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 4.3e-42 176.0 145 63.4
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 1.8e-40 170.6 183 53.6
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 6.6e-35 152.1 309 33.7
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 6.6e-35 152.1 107 70.1
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 3.4e-31 139.8 132 59.8
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 1.7e-30 137.5 99 63.6
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.9e-29 134.0 108 65.7
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 2.3e-24 117.1 267 28.5
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 6.8e-24 115.5 64 90.6
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-23 114.4 116 56.9
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.7e-22 110.9 82 69.5
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 3.2e-21 106.7 128 48.4
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-17 94.7 113 48.7
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 3.1e-16 90.1 113 46.9
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 9.2e-13 78.6 107 48.6
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 1.8e-08 64.3 36 80.6
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 2.4e-08 63.9 45 68.9
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 9.0e-08 62.0 59 52.5
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.0e-07 60.8 51 60.8
GSVIVG01005645001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 51 56.9
GSVIVG01032305001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.2e-06 57.4 51 56.9


User provided reference genes

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