Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0805 Cannabis sativa HOM05D004055 ORTHO05D004795 7.0e-47 190.3 96 100.0
CANSAT01G3086 Cannabis sativa HOM05D004055 ORTHO05D004795 3.4e-25 118.2 164 49.4
Glyma.08G146000 Glycine max HOM05D004055 ORTHO05D004795 1.4e-18 96.3 128 48.4
Duzib114G0632 Durio zibethinus HOM05D004055 ORTHO05D004795 3.4e-17 91.7 149 42.3
Duzib114G0672 Durio zibethinus HOM05D004055 ORTHO05D004795 3.4e-17 91.7 149 42.3
CiPaw.03G129400 Carya illinoinensis HOM05D004055 ORTHO05D004795 5.8e-17 90.9 155 43.2
CsaV3_6G042000 Cucumis sativus L. HOM05D004055 ORTHO05D004795 9.9e-17 90.1 150 42.0
MELO3C008024.2 Cucumis melo HOM05D004055 ORTHO05D004795 1.3e-16 89.7 150 42.0
Phvul.002G268700 Phaseolus vulgaris HOM05D004055 ORTHO05D004795 1.3e-16 89.7 131 43.5
Duzib128G0998 Durio zibethinus HOM05D004055 ORTHO05D004795 1.7e-16 89.4 149 40.9
Lj4g0015873 Lotus japonicus HOM05D004055 ORTHO05D004795 1.7e-16 89.4 134 44.8
CiPaw.04G087200 Carya illinoinensis HOM05D004055 ORTHO05D004795 2.2e-16 89.0 155 41.9
Gohir.A06G175700 Gossypium hirsutum HOM05D004055 ORTHO05D004795 2.2e-16 89.0 148 40.5
Gohir.D06G185400 Gossypium hirsutum HOM05D004055 ORTHO05D004795 2.2e-16 89.0 148 40.5
Gorai.010G216800 Gossypium raimondii HOM05D004055 ORTHO05D004795 2.2e-16 89.0 148 40.5
QL06p030904 Quercus lobata HOM05D004055 ORTHO05D004795 2.2e-16 89.0 160 40.0
Gohir.A05G280900 Gossypium hirsutum HOM05D004055 ORTHO05D004795 2.9e-16 88.6 149 39.6
Gohir.A05G401200 Gossypium hirsutum HOM05D004055 ORTHO05D004795 2.9e-16 88.6 147 40.8
Gohir.D04G014600 Gossypium hirsutum HOM05D004055 ORTHO05D004795 2.9e-16 88.6 147 40.8
Gorai.009G296400 Gossypium raimondii HOM05D004055 ORTHO05D004795 2.9e-16 88.6 149 39.6
Gorai.012G017100 Gossypium raimondii HOM05D004055 ORTHO05D004795 2.9e-16 88.6 147 40.8
Sed0022459 Sechium edule HOM05D004055 ORTHO05D004795 2.9e-16 88.6 142 40.8
VMungo0251G0876 Vigna mungo HOM05D004055 ORTHO05D004795 2.9e-16 88.6 129 43.4
ClCG01G015720 Citrullus lanatus HOM05D004055 ORTHO05D004795 4.9e-16 87.8 150 41.3
COL.COLO4_21459 Corchorus olitorius HOM05D004055 ORTHO05D004795 8.3e-16 87.0 149 41.6
Haze_25105 Corylus avellana HOM05D004055 ORTHO05D004795 1.1e-15 86.7 152 40.1
Thecc.10G166300 Theobroma cacao HOM05D004055 ORTHO05D004795 1.1e-15 86.7 149 40.3
Sabra19G0021600 Salix brachista HOM05D004055 ORTHO05D004795 1.4e-15 86.3 160 39.4
Sabra19G0004100 Salix brachista HOM05D004055 ORTHO05D004795 1.9e-15 85.9 160 38.8
Glyma.05G187800 Glycine max HOM05D004055 ORTHO05D004795 2.4e-15 85.5 126 45.2
Eucgr.I00261 Eucalyptus grandis HOM05D004055 ORTHO05D004795 3.2e-15 85.1 152 40.1
Prupe.6G180300 Prunus persica HOM05D004055 ORTHO05D004795 3.2e-15 85.1 142 42.3
arahy.Tifrunner.gnm1.ann1.WFL6TQ Arachis hypogaea HOM05D004055 ORTHO05D004795 4.1e-15 84.7 128 44.5
Manes.13G082000 Manihot esculenta HOM05D004055 ORTHO05D004795 4.1e-15 84.7 157 38.9
Potri.019G003900 Populus trichocarpa HOM05D004055 ORTHO05D004795 4.1e-15 84.7 162 38.3
TWI79G0735 Tripterygium wilfordii HOM05D004055 ORTHO05D004795 4.1e-15 84.7 148 42.6
GSVIVG01034541001 Vitis vinifera HOM05D004055 ORTHO05D004795 7.1e-15 84.0 140 40.7
Glyma.04G216700 Glycine max HOM05D004055 ORTHO05D004795 9.2e-15 83.6 161 40.4
Glyma.06G149200 Glycine max HOM05D004055 ORTHO05D004795 1.2e-14 83.2 162 39.5
Manes.12G149500 Manihot esculenta HOM05D004055 ORTHO05D004795 1.6e-14 82.8 155 39.4
TWI31G0449 Tripterygium wilfordii HOM05D004055 ORTHO05D004795 1.6e-14 82.8 148 41.2
Atru.chr4.588 Acer truncatum HOM05D004055 ORTHO05D004795 2.1e-14 82.4 147 41.5
AUR62017941 Chenopodium quinoa HOM05D004055 ORTHO05D004795 2.1e-14 82.4 135 40.7
arahy.Tifrunner.gnm1.ann1.GWIQ86 Arachis hypogaea HOM05D004055 ORTHO05D004795 3.5e-14 81.6 128 43.8
Dinv14354 Davidia involucrata HOM05D004055 ORTHO05D004795 3.5e-14 81.6 144 41.7
MBI17_g17030_MAGBIO Magnolia biondii HOM05D004055 ORTHO05D004795 3.5e-14 81.6 158 39.9
Sed0016858 Sechium edule HOM05D004055 ORTHO05D004795 3.5e-14 81.6 150 40.0
Thecc.01G135000 Theobroma cacao HOM05D004055 ORTHO05D004795 3.5e-14 81.6 149 40.3
TAR381G1437 Trochodendron aralioides HOM05D004055 ORTHO05D004795 3.5e-14 81.6 156 37.8
Sabra16G0193500 Salix brachista HOM05D004055 ORTHO05D004795 4.6e-14 81.3 160 38.1
FAN28G2172 Fragaria x ananassa HOM05D004055 ORTHO05D004795 6.0e-14 80.9 144 41.0
Sc16g0004020 Simmondsia chinensis HOM05D004055 ORTHO05D004795 6.0e-14 80.9 135 40.0
BraA03t09773Z Brassica rapa HOM05D004055 ORTHO05D004795 7.8e-14 80.5 149 36.2
CDE02G4766 Ceratophyllum demersum HOM05D004055 ORTHO05D004795 7.8e-14 80.5 146 39.0
Lj4A857G22 Lonicera japonica HOM05D004055 ORTHO05D004795 7.8e-14 80.5 157 38.2
MD01G1024900 Malus domestica HOM05D004055 ORTHO05D004795 7.8e-14 80.5 147 39.5
A03p04290 Brassica napus HOM05D004055 ORTHO05D004795 1.0e-13 80.1 149 36.2
Phvul.009G146900 Phaseolus vulgaris HOM05D004055 ORTHO05D004795 1.0e-13 80.1 162 38.9
Potri.001G307600 Populus trichocarpa HOM05D004055 ORTHO05D004795 1.0e-13 80.1 162 37.7
VMungo1309G1914 Vigna mungo HOM05D004055 ORTHO05D004795 1.0e-13 80.1 161 38.5
C03p04740 Brassica napus HOM05D004055 ORTHO05D004795 1.3e-13 79.7 150 36.0
BolC3t13008H Brassica oleracea HOM05D004055 ORTHO05D004795 1.3e-13 79.7 150 36.0
Lalb_Chr23g0272481 Lupinus albus HOM05D004055 ORTHO05D004795 1.3e-13 79.7 163 38.7
Lalb_Chr08g0238691 Lupinus albus HOM05D004055 ORTHO05D004795 1.7e-13 79.3 170 37.1
Lalb_Chr12g0203361 Lupinus albus HOM05D004055 ORTHO05D004795 1.7e-13 79.3 132 43.9
MD15G1319400 Malus domestica HOM05D004055 ORTHO05D004795 1.7e-13 79.3 144 38.9
Ciclev10025964m.g Citrus clementina HOM05D004055 ORTHO05D004795 2.3e-13 79.0 157 37.6
Hma1.2p1_0282F.1_g113380 Hydrangea macrophylla HOM05D004055 ORTHO05D004795 3.0e-13 78.6 178 36.5
Duzib264G0984 Durio zibethinus HOM05D004055 ORTHO05D004795 3.9e-13 78.2 149 38.3
FAN23G0659 Fragaria x ananassa HOM05D004055 ORTHO05D004795 3.9e-13 78.2 151 38.4
Lj1g0026829 Lotus japonicus HOM05D004055 ORTHO05D004795 3.9e-13 78.2 156 36.5
Lalb_Chr11g0068211 Lupinus albus HOM05D004055 ORTHO05D004795 3.9e-13 78.2 171 36.3
Lalb_Chr13g0296401 Lupinus albus HOM05D004055 ORTHO05D004795 3.9e-13 78.2 128 38.3
Dinv15094 Davidia involucrata HOM05D004055 ORTHO05D004795 5.1e-13 77.8 150 39.3
FvH4_1g23670 Fragaria vesca HOM05D004055 ORTHO05D004795 5.1e-13 77.8 151 38.4
GSVIVG01026619001 Vitis vinifera HOM05D004055 ORTHO05D004795 5.1e-13 77.8 143 39.2
FAN19G0550 Fragaria x ananassa HOM05D004055 ORTHO05D004795 6.6e-13 77.4 152 38.2
Lj2A578T13 Lonicera japonica HOM05D004055 ORTHO05D004795 6.6e-13 77.4 138 39.9
Lj2A588T35 Lonicera japonica HOM05D004055 ORTHO05D004795 6.6e-13 77.4 138 39.9
BcaB08g37176 Brassica carinata HOM05D004055 ORTHO05D004795 8.6e-13 77.0 155 34.2
C09p67670 Brassica napus HOM05D004055 ORTHO05D004795 8.6e-13 77.0 154 34.4
Nn5g27192 Nelumbo nucifera HOM05D004055 ORTHO05D004795 1.1e-12 76.6 155 38.7
Os12g0165700 Oryza sativa ssp. japonica HOM05D004055 ORTHO05D004795 1.1e-12 76.6 131 38.2
CDE08G1219 Ceratophyllum demersum HOM05D004055 ORTHO05D004795 1.5e-12 76.3 144 36.8
FAN26G2960 Fragaria x ananassa HOM05D004055 ORTHO05D004795 1.5e-12 76.3 148 38.5
PGR119G1730 Punica granatum HOM05D004055 ORTHO05D004795 1.5e-12 76.3 159 34.6
Aqoxy6G00380 Aquilegia oxysepala HOM05D004055 ORTHO05D004795 1.9e-12 75.9 163 33.1
THA.LOC104799385 Tarenaya hassleriana HOM05D004055 ORTHO05D004795 1.9e-12 75.9 154 37.7
A10p27610 Brassica napus HOM05D004055 ORTHO05D004795 2.5e-12 75.5 150 34.0
BraA10t44812Z Brassica rapa HOM05D004055 ORTHO05D004795 2.5e-12 75.5 150 34.0
Nitab4.5_0023764g0010 Nicotiana tabacum HOM05D004055 ORTHO05D004795 2.5e-12 75.5 103 41.7
Oeu011950.2 Olea europaea HOM05D004055 ORTHO05D004795 2.5e-12 75.5 132 38.6
CSS0019507 Camellia sinensis var. sinensis HOM05D004055 ORTHO05D004795 4.3e-12 74.7 170 35.3
EL10Ac6g15243 Beta vulgaris HOM05D004055 ORTHO05D004795 5.6e-12 74.3 161 34.2
DCAR_001415 Daucus carota HOM05D004055 ORTHO05D004795 5.6e-12 74.3 151 36.4
THA.LOC104818468 Tarenaya hassleriana HOM05D004055 ORTHO05D004795 7.3e-12 73.9 149 34.9
TPR.G18732 Trifolium pratense HOM05D004055 ORTHO05D004795 7.3e-12 73.9 158 35.4
HPP92_004417 Vanilla planifolia HOM05D004055 ORTHO05D004795 9.6e-12 73.6 160 35.6
Nitab4.5_0004021g0040 Nicotiana tabacum HOM05D004055 ORTHO05D004795 1.2e-11 73.2 157 35.7
BolC9t59529H Brassica oleracea HOM05D004055 ORTHO05D004795 1.6e-11 72.8 157 33.8
TAR625G1530 Trochodendron aralioides HOM05D004055 ORTHO05D004795 1.6e-11 72.8 156 36.5
Actinidia09813 Actinidia chinensis HOM05D004055 ORTHO05D004795 2.8e-11 72.0 147 37.4
COL.COLO4_35774 Corchorus olitorius HOM05D004055 ORTHO05D004795 2.8e-11 72.0 149 35.6
Lsat_1_v5_gn_5_40301 Lactuca sativa HOM05D004055 ORTHO05D004795 3.6e-11 71.6 153 35.3
PSO541G1884 Papaver somniferum HOM05D004055 ORTHO05D004795 3.6e-11 71.6 162 35.2
PSO675G8047 Papaver somniferum HOM05D004055 ORTHO05D004795 3.6e-11 71.6 163 34.4
arahy.Tifrunner.gnm1.ann1.F10EXU Arachis hypogaea HOM05D004055 ORTHO05D004795 4.7e-11 71.2 178 33.1
HanXRQChr15g0495911 Helianthus annuus HOM05D004055 ORTHO05D004795 4.7e-11 71.2 144 36.8
Medtr3g095380 Medicago truncatula HOM05D004055 ORTHO05D004795 6.2e-11 70.9 160 35.0
AUR62003632 Chenopodium quinoa HOM05D004055 ORTHO05D004795 8.1e-11 70.5 175 32.0
Nitab4.5_0001582g0050 Nicotiana tabacum HOM05D004055 ORTHO05D004795 8.1e-11 70.5 157 34.4
RcHm_v2.0_Chr2g0119271 Rosa chinensis HOM05D004055 ORTHO05D004795 1.4e-10 69.7 146 37.7
Peaxi162Scf00599g00035 Petunia axillaris HOM05D004055 ORTHO05D004795 2.4e-10 68.9 132 33.3
Sopen11g001460 Solanum pennellii HOM05D004055 ORTHO05D004795 2.4e-10 68.9 153 34.6
arahy.Tifrunner.gnm1.ann1.W5F641 Arachis hypogaea HOM05D004055 ORTHO05D004795 3.1e-10 68.6 180 32.2
CAN.G869.1 Capsicum annuum HOM05D004055 ORTHO05D004795 3.1e-10 68.6 136 34.6
PGSC0003DMG400003992 Solanum tuberosum HOM05D004055 ORTHO05D004795 3.1e-10 68.6 153 34.0
Dinv41077 Davidia involucrata HOM05D004055 ORTHO05D004795 4.0e-10 68.2 146 34.9
Lsat_1_v5_gn_4_139020 Lactuca sativa HOM05D004055 ORTHO05D004795 5.2e-10 67.8 155 34.8
Solyc11g005450.3 Solanum lycopersicum HOM05D004055 ORTHO05D004795 5.2e-10 67.8 153 34.0
CAN.G516.3 Capsicum annuum HOM05D004055 ORTHO05D004795 8.9e-10 67.0 159 32.1
Sopen04g027490 Solanum pennellii HOM05D004055 ORTHO05D004795 2.0e-09 65.9 128 34.4
Solyc04g071520.3 Solanum lycopersicum HOM05D004055 ORTHO05D004795 2.6e-09 65.5 127 33.9
PGSC0003DMG400024089 Solanum tuberosum HOM05D004055 ORTHO05D004795 3.4e-09 65.1 128 32.8
AL6G20260 Arabidopsis lyrata HOM05D004055 ORTHO05D004795 5.8e-09 64.3 47 70.2
AT5G09850 Arabidopsis thaliana HOM05D004055 ORTHO05D004795 5.8e-09 64.3 47 70.2
CARHR203540 Cardamine hirsuta HOM05D004055 ORTHO05D004795 5.8e-09 64.3 47 70.2
Thhalv10013991m.g Eutrema salsugineum HOM05D004055 ORTHO05D004795 5.8e-09 64.3 47 70.2
Sp6g33560 Schrenkiella parvula HOM05D004055 ORTHO05D004795 5.8e-09 64.3 47 70.2
MSTRG.1089 Avicennia marina HOM05D004055 ORTHO05D004795 7.6e-09 63.9 149 33.6
Hund03496 Selenicereus undatus HOM05D004055 ORTHO05D004795 9.9e-09 63.5 163 32.5
Aa31LG3G17270 Aethionema arabicum HOM05D004055 ORTHO05D004795 1.7e-08 62.8 47 68.1
Carub.0006s0827 Capsella rubella HOM05D004055 ORTHO05D004795 1.7e-08 62.8 47 68.1
Ca_16910_v3 Cicer arietinum L. HOM05D004055 ORTHO05D004795 1.7e-08 62.8 44 63.6
Cfa009957 Carpinus fangiana HOM05D000362 ORTHO05D000325 2.2e-08 62.4 47 59.6
Zm00001eb202520 Zea mays HOM05D004055 ORTHO05D004795 2.2e-08 62.4 148 31.1
HanXRQChr09g0259611 Helianthus annuus HOM05D004055 ORTHO05D004795 4.9e-08 61.2 155 30.3
unitig_736.g22361 Utricularia gibba HOM05D004055 ORTHO05D004795 4.9e-08 61.2 184 29.3
ECA246G2063 Erigeron canadensis HOM05D004055 ORTHO05D004795 6.4e-08 60.8 150 34.7
Gohir.D05G282900 Gossypium hirsutum HOM05D004055 ORTHO05D004795 6.4e-08 60.8 32 90.6
ATR0820G131 Amborella trichopoda HOM05D004055 ORTHO05D004795 8.4e-08 60.5 172 29.1
Nitab4.5_0001224g0010 Nicotiana tabacum HOM05D004055 ORTHO05D004795 1.4e-07 59.7 95 37.9
Dinv16096 Davidia involucrata HOM05D004055 ORTHO05D004795 2.4e-07 58.9 32 87.5
Peaxi162Scf00025g02619 Petunia axillaris HOM05D004055 ORTHO05D004795 3.2e-07 58.5 51 56.9
Migut.H02472 Erythranthe guttata HOM05D004055 ORTHO05D004795 4.2e-07 58.2 190 28.4
Migut.L00046 Erythranthe guttata HOM05D004055 ORTHO05D004795 4.2e-07 58.2 32 84.4
SalBow8G2113 Salvia bowleyana HOM05D004055 ORTHO05D004795 4.2e-07 58.2 185 28.1
SGA_v2.0_scaffold48G18001 Striga asiatica HOM05D004055 ORTHO05D004795 4.2e-07 58.2 140 30.0
Ah.02g122270 Amaranthus hybridus HOM05D004055 ORTHO05D004795 7.1e-07 57.4 39 64.1
Oeu047640.3 Olea europaea HOM05D004055 ORTHO05D004795 9.3e-07 57.0 176 30.7
MSTRG.23289 Avicennia marina HOM05D004055 ORTHO05D004795 1.2e-06 56.6 32 81.2
Cpa.g.sc72.32 Carica papaya HOM05D004055 ORTHO05D004795 1.6e-06 56.2 32 78.1
SGA_v2.0_scaffold47G17681 Striga asiatica HOM05D004055 ORTHO05D004795 1.6e-06 56.2 33 78.8
SalBow5G2387 Salvia bowleyana HOM05D004055 ORTHO05D004795 2.1e-06 55.8 34 76.5
unitig_899.g14991 Utricularia gibba HOM05D004055 ORTHO05D004795 2.1e-06 55.8 32 81.2
SGA_v2.0_scaffold2G01257 Striga asiatica HOM05D004055 ORTHO05D004795 4.6e-06 54.7 32 78.1
Os11g0166800 Oryza sativa ssp. japonica HOM05D004055 ORTHO05D004795 6.0e-06 54.3 32 75.0
Mapoly0002s0340 Marchantia polymorpha HOM05D002493 ORTHO05D003175 7.8e-06 53.9 40 55.0
Oeu037779.1 Olea europaea HOM05D004055 ORTHO05D004795 7.8e-06 53.9 180 29.4


User provided reference genes

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