Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0745 Cannabis sativa HOM05D005607 ORTHO05D008142 1.0e-288 996.1 523 100.0
Prupe.4G175900 Prunus persica HOM05D005607 ORTHO05D008142 3.5e-201 705.3 524 69.3
MD03G1232700 Malus domestica HOM05D005607 ORTHO05D008142 2.9e-195 685.6 525 68.0
Cfa020607 Carpinus fangiana HOM05D005607 ORTHO05D008142 2.1e-193 679.5 525 69.0
CiPaw.11G167700 Carya illinoinensis HOM05D005607 ORTHO05D008142 4.3e-191 671.8 525 68.0
RcHm_v2.0_Chr5g0032701 Rosa chinensis HOM05D005607 ORTHO05D008142 1.6e-190 669.8 524 67.7
GSVIVG01014288001 Vitis vinifera HOM05D005607 ORTHO05D008142 1.1e-189 667.2 526 66.9
FvH4_3g19420 Fragaria vesca HOM05D005607 ORTHO05D008142 9.3e-186 654.1 524 66.2
Thecc.07G096400 Theobroma cacao HOM05D005607 ORTHO05D008142 6.0e-185 651.4 525 66.1
Potri.001G396500 Populus trichocarpa HOM05D005607 ORTHO05D008142 7.9e-185 651.0 528 66.7
CSS0008326 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 5.1e-184 648.3 525 65.3
Gohir.A04G035700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.4e-181 640.2 525 64.0
Gohir.D05G347700 Gossypium hirsutum HOM05D005607 ORTHO05D008142 1.4e-181 640.2 525 63.8
COL.COLO4_36717 Corchorus olitorius HOM05D005607 ORTHO05D008142 2.4e-181 639.4 525 64.2
Manes.03G105800 Manihot esculenta HOM05D005607 ORTHO05D008142 2.4e-181 639.4 525 64.2
CsaV3_4G033450 Cucumis sativus L. HOM05D005607 ORTHO05D008142 3.1e-181 639.0 526 63.7
TWI38G0301 Tripterygium wilfordii HOM05D005607 ORTHO05D008142 3.4e-180 635.6 525 63.8
Sabra16G0259600 Salix brachista HOM05D005607 ORTHO05D008142 4.5e-180 635.2 528 65.0
MELO3C025610.2 Cucumis melo HOM05D005607 ORTHO05D008142 7.6e-180 634.4 526 62.9
Gorai.009G375500 Gossypium raimondii HOM05D005607 ORTHO05D008142 7.6e-180 634.4 525 63.8
Ciclev10007885m.g Citrus clementina HOM05D005607 ORTHO05D008142 1.3e-179 633.6 525 64.6
FAN16G0865 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.3e-179 633.6 538 63.6
Eucgr.F01169 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.7e-179 633.3 525 63.2
Dinv20204 Davidia involucrata HOM05D005607 ORTHO05D008142 2.2e-179 632.9 525 65.5
ClCG11G017810 Citrullus lanatus HOM05D005607 ORTHO05D008142 2.9e-179 632.5 540 62.8
Sed0013999 Sechium edule HOM05D005607 ORTHO05D008142 4.2e-178 628.6 526 62.5
Lj3g0025006 Lotus japonicus HOM05D005607 ORTHO05D008142 6.1e-177 624.8 524 63.0
arahy.Tifrunner.gnm1.ann1.K8QLTQ Arachis hypogaea HOM05D005607 ORTHO05D008142 1.0e-176 624.0 527 63.6
Rhsim06G0202700 Rhododendron simsii HOM05D005607 ORTHO05D008142 1.3e-176 623.6 540 63.1
Haze_09409 Corylus avellana HOM05D005607 ORTHO05D008142 3.9e-176 622.1 569 60.6
Glyma.06G236100 Glycine max HOM05D005607 ORTHO05D008142 5.1e-176 621.7 526 63.1
PGR083G1887 Punica granatum HOM05D005607 ORTHO05D008142 5.1e-176 621.7 526 63.3
MSTRG.12893 Avicennia marina HOM05D005607 ORTHO05D008142 1.3e-174 617.1 525 62.1
arahy.Tifrunner.gnm1.ann1.3D346W Arachis hypogaea HOM05D005607 ORTHO05D008142 4.8e-174 615.1 527 62.6
Lalb_Chr19g0134061 Lupinus albus HOM05D005607 ORTHO05D008142 1.1e-173 614.0 525 62.7
Cpa.g.sc131.86 Carica papaya HOM05D005607 ORTHO05D008142 3.1e-173 612.5 525 61.7
Nn1g04204 Nelumbo nucifera HOM05D005607 ORTHO05D008142 9.1e-173 610.9 526 61.8
vmacro11890 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 9.1e-173 610.9 548 60.6
Cc05_g11730 Coffea canephora HOM05D005607 ORTHO05D008142 2.6e-172 609.4 525 62.3
Duzib213G0871 Durio zibethinus HOM05D005607 ORTHO05D008142 2.6e-172 609.4 496 64.9
vmacro23190 Vaccinium macrocarpon HOM05D005607 ORTHO05D008142 3.4e-172 609.0 548 60.4
MD11G1253400 Malus domestica HOM05D005607 ORTHO05D008142 1.7e-171 606.7 464 67.5
Atru.chr2.2407 Acer truncatum HOM05D005607 ORTHO05D008142 2.2e-171 606.3 525 62.7
Ca_23036_v3 Cicer arietinum L. HOM05D005607 ORTHO05D008142 6.5e-171 604.7 524 61.3
Actinidia31524 Actinidia chinensis HOM05D005607 ORTHO05D008142 1.4e-170 603.6 525 62.5
CSS0003695 Camellia sinensis var. sinensis HOM05D005607 ORTHO05D008142 1.4e-168 597.0 537 61.1
TPR.G28174 Trifolium pratense HOM05D005607 ORTHO05D008142 2.0e-167 593.2 525 60.4
Medtr8g058790 Medicago truncatula HOM05D005607 ORTHO05D008142 3.3e-167 592.4 520 61.0
Medtr8g061280 Medicago truncatula HOM05D005607 ORTHO05D008142 3.3e-167 592.4 520 61.0
Sc16g0007180 Simmondsia chinensis HOM05D005607 ORTHO05D008142 2.4e-165 586.3 527 59.2
Nitab4.5_0008275g0010 Nicotiana tabacum HOM05D005607 ORTHO05D008142 3.1e-165 585.9 525 60.0
CAN.G162.36 Capsicum annuum HOM05D005607 ORTHO05D008142 5.3e-165 585.1 526 59.1
THA.LOC104815562 Tarenaya hassleriana HOM05D005607 ORTHO05D008142 1.2e-164 583.9 526 59.1
Nitab4.5_0002330g0110 Nicotiana tabacum HOM05D005607 ORTHO05D008142 7.7e-164 581.3 525 59.8
PSO210G5410 Papaver somniferum HOM05D005607 ORTHO05D008142 2.9e-163 579.3 525 58.7
PSO832G0774 Papaver somniferum HOM05D005607 ORTHO05D008142 2.9e-163 579.3 525 58.5
Sopen07g031060 Solanum pennellii HOM05D005607 ORTHO05D008142 1.2e-161 573.9 525 58.5
Oeu005401.4 Olea europaea HOM05D005607 ORTHO05D008142 1.4e-160 570.5 643 52.9
HanXRQChr15g0495421 Helianthus annuus HOM05D005607 ORTHO05D008142 2.3e-160 569.7 526 58.0
ECA236G2999 Erigeron canadensis HOM05D005607 ORTHO05D008142 1.1e-159 567.4 526 57.8
Lsat_1_v5_gn_7_104480 Lactuca sativa HOM05D005607 ORTHO05D008142 7.4e-159 564.7 527 57.7
Eucgr.F01141 Eucalyptus grandis HOM05D005607 ORTHO05D008142 4.8e-158 562.0 525 57.7
DCAR_017123 Daucus carota HOM05D005607 ORTHO05D008142 1.6e-156 557.0 556 57.2
VMungo1127G0827 Vigna mungo HOM05D005607 ORTHO05D008142 7.7e-156 554.7 524 57.8
AT3G15180 Arabidopsis thaliana HOM05D005607 ORTHO05D008142 2.1e-153 546.6 521 55.7
Eucgr.F00890 Eucalyptus grandis HOM05D005607 ORTHO05D008142 1.4e-152 543.9 525 55.4
AL3G27570 Arabidopsis lyrata HOM05D005607 ORTHO05D008142 8.8e-152 541.2 521 55.5
Carub.0003s1483 Capsella rubella HOM05D005607 ORTHO05D008142 9.7e-151 537.7 522 55.4
Sp3g13390 Schrenkiella parvula HOM05D005607 ORTHO05D008142 1.3e-150 537.3 525 54.9
SGA_v2.0_scaffold130G34350 Striga asiatica HOM05D005607 ORTHO05D008142 2.8e-150 536.2 568 53.2
BraA05t22250Z Brassica rapa HOM05D005607 ORTHO05D008142 2.0e-148 530.0 521 54.1
Thhalv10020515m.g Eutrema salsugineum HOM05D005607 ORTHO05D008142 6.5e-147 525.0 521 53.2
Aqoxy4G00691 Aquilegia oxysepala HOM05D005607 ORTHO05D008142 2.5e-146 523.1 465 59.1
CDE10G0361 Ceratophyllum demersum HOM05D005607 ORTHO05D008142 3.2e-146 522.7 516 54.8
ATR0737G117 Amborella trichopoda HOM05D005607 ORTHO05D008142 4.2e-146 522.3 519 54.5
Ah.06g184600 Amaranthus hybridus HOM05D005607 ORTHO05D008142 8.8e-144 514.6 527 54.8
A05p34290 Brassica napus HOM05D005607 ORTHO05D008142 8.8e-144 514.6 548 51.5
C05p52050 Brassica napus HOM05D005607 ORTHO05D008142 1.2e-143 514.2 547 51.9
BolC5t33890H Brassica oleracea HOM05D005607 ORTHO05D008142 4.4e-143 512.3 535 52.1
Aa31LG8G2380 Aethionema arabicum HOM05D005607 ORTHO05D008142 1.7e-142 510.4 532 53.0
EL10Ac4g08241 Beta vulgaris HOM05D005607 ORTHO05D008142 1.1e-141 507.7 521 54.1
BcaB06g29542 Brassica carinata HOM05D005607 ORTHO05D008142 3.5e-140 502.7 521 52.8
Duzib170G0139 Durio zibethinus HOM05D005607 ORTHO05D008142 5.5e-138 495.4 525 55.2
Psat7g207160 Pisum sativum HOM05D005607 ORTHO05D008142 1.2e-132 477.6 424 60.1
Migut.H01958 Erythranthe guttata HOM05D005607 ORTHO05D008142 8.6e-131 471.5 447 56.6
Zm00001eb295460 Zea mays HOM05D005607 ORTHO05D008142 1.4e-128 464.2 516 48.1
Os05g0557200 Oryza sativa ssp. japonica HOM05D005607 ORTHO05D008142 2.3e-128 463.4 516 48.3
Phvul.011G160300 Phaseolus vulgaris HOM05D005607 ORTHO05D008142 5.8e-127 458.8 451 56.3
Lj1A839T37 Lonicera japonica HOM05D005607 ORTHO05D008142 9.2e-117 424.9 389 60.4
Hund02235 Selenicereus undatus HOM05D005607 ORTHO05D008142 4.6e-108 396.0 402 55.7
Lj1A839T35 Lonicera japonica HOM05D005607 ORTHO05D008142 4.0e-104 382.9 407 55.5
Peaxi162Scf00069g01839 Petunia axillaris HOM05D005607 ORTHO05D008142 2.1e-100 370.5 328 59.8
AUR62019473 Chenopodium quinoa HOM05D005607 ORTHO05D008142 6.6e-99 365.5 556 43.2
AUR62036159 Chenopodium quinoa HOM05D005607 ORTHO05D008142 3.3e-98 363.2 526 44.1
Solyc07g062860.3 Solanum lycopersicum HOM05D005607 ORTHO05D008142 4.7e-97 359.4 328 58.2
unitig_749.g13531 Utricularia gibba HOM05D005607 ORTHO05D008142 2.8e-89 333.6 367 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1287 Anthoceros agrestis HOM05D005607 ORTHO05D008142 1.3e-81 308.1 515 37.5
SalBow7G3213 Salvia bowleyana HOM05D005607 ORTHO05D008142 2.4e-80 303.9 290 56.2
SalBow7G3521 Salvia bowleyana HOM05D005607 ORTHO05D008142 2.4e-80 303.9 290 56.2
Pp3c1_12630 Physcomitrium patens HOM05D005607 ORTHO05D008142 7.1e-77 292.4 541 33.8
QL08p023962 Quercus lobata HOM05D005607 ORTHO05D008142 2.1e-76 290.8 241 65.1
FAN11G3919 Fragaria x ananassa HOM05D005607 ORTHO05D008142 1.9e-74 284.3 268 58.6
MBI06_g04182_MAGBIO Magnolia biondii HOM05D005607 ORTHO05D008142 4.5e-71 273.1 352 48.3
SMO139G0024 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 1.1e-69 268.5 523 34.4
MD11G1279000 Malus domestica HOM05D005607 ORTHO05D008142 3.2e-69 266.9 287 55.7
QL08p023973 Quercus lobata HOM05D005607 ORTHO05D008142 7.7e-63 245.7 195 65.6
PGSC0003DMG400012404 Solanum tuberosum HOM05D005607 ORTHO05D008142 4.5e-55 219.9 182 59.3
CARHR090160 Cardamine hirsuta HOM05D005607 ORTHO05D008142 1.9e-53 214.5 229 51.1
Glyma.12G162201 Glycine max HOM05D005607 ORTHO05D008142 2.8e-49 200.7 164 63.4
SMO145G0057 Selaginella moellendorffii HOM05D005607 ORTHO05D008142 2.2e-46 191.0 490 30.6
Peaxi162Scf00069g01838 Petunia axillaris HOM05D005607 ORTHO05D008142 6.5e-46 189.5 163 61.3
QL08p023949 Quercus lobata HOM05D005607 ORTHO05D008142 1.1e-40 172.2 104 77.9
FAN25G1444 Fragaria x ananassa HOM05D005607 ORTHO05D008142 3.8e-38 163.7 111 73.0
CBR_g2884 Chara braunii HOM05D005607 ORTHO05D008142 5.2e-35 153.3 290 36.9
SEGI_34734 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 2.0e-23 114.8 117 51.3
SEGI_17376 Sequoiadendron giganteum HOM05D005607 ORTHO05D008142 1.3e-22 112.1 135 42.2
MELO3C033904.2 Cucumis melo HOM05D005607 ORTHO05D008142 1.5e-21 108.6 91 59.3
EL10Ac6g14983 Beta vulgaris HOM05D005607 ORTHO05D008142 7.8e-15 86.3 101 49.5
CBR_g2888 Chara braunii HOM05D000019 ORTHO05D000002 2.6e-10 71.2 77 45.5
MELO3C030698.2 Cucumis melo HOM05D005607 ORTHO05D169846 1.3e-09 68.9 94 44.7
Cre05.g246300 Chlamydomonas reinhardtii HOM05D005607 ORTHO05D008142 5.4e-08 63.5 237 24.5
MELO3C033728.2 Cucumis melo HOM05D005607 ORTHO05D169673 6.0e-07 60.1 46 58.7
MELO3C033981.2 Cucumis melo HOM05D005607 ORTHO05D166899 2.3e-06 58.2 67 49.3


User provided reference genes

Program Settings