Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 2.6e-96 355.9 258 100.0
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 2.8e-50 203.0 245 57.1
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 5.9e-48 195.3 259 59.5
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.3e-47 194.1 256 57.8
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.9e-47 193.0 256 57.4
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 6.5e-47 191.8 260 54.2
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 8.4e-47 191.4 258 60.5
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 7.2e-46 188.3 260 53.8
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 7.2e-46 188.3 260 59.2
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 9.3e-46 188.0 258 58.9
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 4.6e-45 185.7 260 53.1
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 7.9e-45 184.9 259 61.0
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.0e-44 184.5 260 47.3
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 1.0e-44 184.5 254 62.2
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 1.3e-44 184.1 260 53.5
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 3.0e-44 183.0 260 49.6
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 3.0e-44 183.0 257 53.3
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 5.1e-44 182.2 261 46.0
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.1e-43 181.0 257 54.9
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.9e-43 180.3 256 43.8
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 2.8e-42 176.4 262 64.1
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 4.8e-42 175.6 256 61.7
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 1.4e-41 174.1 258 55.8
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 2.4e-41 173.3 258 60.9
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 3.1e-41 172.9 257 47.9
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.2e-40 171.0 260 63.1
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 3.4e-40 169.5 258 57.0
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 3.4e-40 169.5 257 64.2
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 5.9e-40 168.7 262 54.6
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.0e-39 167.9 262 57.6
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 1.0e-39 167.9 255 56.1
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 1.3e-39 167.5 263 44.5
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 2.9e-39 166.4 262 53.8
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 3.8e-39 166.0 259 54.4
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 5.0e-39 165.6 259 41.7
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 8.5e-39 164.9 255 59.2
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 1.1e-38 164.5 258 45.0
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 1.4e-38 164.1 280 51.1
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 1.4e-38 164.1 259 60.2
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.9e-38 163.7 259 52.9
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.9e-38 163.7 259 52.9
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 3.2e-38 162.9 258 56.6
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 5.5e-38 162.2 258 51.9
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 9.4e-38 161.4 263 59.7
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.6e-37 160.6 268 53.0
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 1.6e-37 160.6 235 60.4
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 2.1e-37 160.2 260 41.9
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.1e-37 160.2 247 42.9
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 2.1e-37 160.2 258 51.6
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 2.7e-37 159.8 256 52.0
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 2.7e-37 159.8 258 45.7
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 4.6e-37 159.1 259 42.5
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 6.1e-37 158.7 260 42.3
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 6.1e-37 158.7 223 59.6
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.0e-36 157.9 262 59.9
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 1.4e-36 157.5 259 54.1
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 1.8e-36 157.1 260 51.9
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 1.8e-36 157.1 224 54.0
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 1.8e-36 157.1 258 56.6
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 1.8e-36 157.1 245 51.0
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 1.8e-36 157.1 259 40.9
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.8e-36 157.1 260 41.9
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 3.0e-36 156.4 262 50.8
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 3.9e-36 156.0 267 55.4
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 6.7e-36 155.2 260 61.2
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 6.7e-36 155.2 258 42.2
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.1e-35 154.5 258 59.7
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.5e-35 153.3 277 50.5
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 5.7e-35 152.1 259 49.8
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 5.7e-35 152.1 218 54.6
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 5.7e-35 152.1 260 51.2
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 5.7e-35 152.1 260 50.4
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 7.4e-35 151.8 261 41.8
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 9.7e-35 151.4 260 51.2
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 1.7e-34 150.6 260 50.8
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 1.7e-34 150.6 260 50.8
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 2.2e-34 150.2 257 41.6
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 2.8e-34 149.8 246 40.7
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 2.8e-34 149.8 265 58.9
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 3.7e-34 149.4 256 39.8
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 8.2e-34 148.3 267 38.6
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 1.1e-33 147.9 260 40.8
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 1.4e-33 147.5 260 40.0
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 3.1e-33 146.4 252 48.8
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 3.1e-33 146.4 218 42.7
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 3.1e-33 146.4 244 54.5
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 4.1e-33 146.0 195 66.7
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.2e-32 144.4 260 49.2
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 2.0e-32 143.7 259 51.4
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 2.6e-32 143.3 240 39.6
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 4.5e-32 142.5 263 40.3
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 5.9e-32 142.1 264 47.3
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 1.3e-31 141.0 261 48.3
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 1.7e-31 140.6 257 48.2
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 6.5e-31 138.7 258 54.7
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 8.5e-31 138.3 245 60.4
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 2.1e-29 133.7 256 37.5
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 3.9e-28 129.4 123 57.7
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 6.7e-28 128.6 122 59.8
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.1e-27 127.9 228 53.1
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 2.0e-27 127.1 120 55.8
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 2.6e-27 126.7 195 65.6
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 5.7e-27 125.6 250 36.8
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 3.7e-26 122.9 256 35.5
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 3.7e-26 122.9 241 39.0
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 3.7e-26 122.9 282 34.0
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 4.8e-26 122.5 242 47.9
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 8.2e-26 121.7 126 54.8
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 8.2e-26 121.7 240 47.1
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 1.4e-25 120.9 246 43.9
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 9.1e-25 118.2 268 43.3
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 2.6e-24 116.7 122 52.5
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 3.5e-24 116.3 232 47.4
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 3.5e-24 116.3 269 46.1
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 5.5e-22 109.0 250 42.0
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 7.2e-22 108.6 258 36.0
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 7.2e-22 108.6 258 36.0
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 5.2e-20 102.4 216 37.0
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 5.7e-19 99.0 214 36.0
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 1.7e-18 97.4 127 44.1
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 2.8e-18 96.7 83 62.7
Actinidia01119 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.3e-15 87.8 83 60.2
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.3e-12 77.0 200 28.5
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 1.5e-11 74.3 232 26.7
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 4.4e-11 72.8 210 26.7
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 8.3e-10 68.6 214 28.0
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 8.3e-10 68.6 180 28.9
Lalb_Chr03g0043011 Lupinus albus HOM05D005866 ORTHO05D007078 7.0e-09 65.5 82 47.6
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 9.1e-09 65.1 84 47.6
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 2.2e-07 60.5 66 48.5
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 8.5e-07 58.5 80 46.2
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 3.2e-06 56.6 62 50.0
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 4.2e-06 56.2 84 42.9


User provided reference genes

Program Settings