Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0626 Cannabis sativa HOM05D006626 ORTHO05D007352 7.5e-172 607.1 301 100.0
CiPaw.09G191700 Carya illinoinensis HOM05D006626 ORTHO05D007352 1.1e-111 407.1 309 71.8
QL07p048128 Quercus lobata HOM05D006626 ORTHO05D007352 1.2e-108 397.1 300 68.0
PGR004G1893 Punica granatum HOM05D006626 ORTHO05D007352 5.7e-103 378.3 299 67.6
TAR623G1666 Trochodendron aralioides HOM05D006626 ORTHO05D007352 1.4e-101 373.6 308 65.6
GSVIVG01034185001 Vitis vinifera HOM05D006626 ORTHO05D007352 1.2e-100 370.5 304 67.4
Nn2g10382 Nelumbo nucifera HOM05D006626 ORTHO05D007352 5.9e-100 368.2 307 64.5
Sed0005156 Sechium edule HOM05D006626 ORTHO05D007352 5.9e-100 368.2 302 68.5
MD12G1140400 Malus domestica HOM05D006626 ORTHO05D007352 1.7e-99 366.7 310 65.8
MD04G1127200 Malus domestica HOM05D006626 ORTHO05D007352 1.1e-98 364.0 310 64.5
Gohir.A09G156700 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.4e-98 363.6 310 66.1
Gohir.D09G152000 Gossypium hirsutum HOM05D006626 ORTHO05D007352 1.4e-98 363.6 310 66.5
Atru.chr8.1962 Acer truncatum HOM05D006626 ORTHO05D007352 4.2e-98 362.1 305 65.2
CSS0017232 Camellia sinensis var. sinensis HOM05D006626 ORTHO05D007352 1.6e-97 360.1 318 65.4
Gorai.006G173400 Gossypium raimondii HOM05D006626 ORTHO05D007352 1.6e-97 360.1 310 66.1
COL.COLO4_14816 Corchorus olitorius HOM05D006626 ORTHO05D007352 8.0e-97 357.8 308 64.3
CsaV3_3G034930 Cucumis sativus L. HOM05D006626 ORTHO05D007352 1.4e-96 357.1 304 64.8
Lj2A96T66 Lonicera japonica HOM05D006626 ORTHO05D007352 1.1e-95 354.0 297 66.3
vmacro20144 Vaccinium macrocarpon HOM05D006626 ORTHO05D007352 1.1e-95 354.0 315 63.2
Lalb_Chr19g0125411 Lupinus albus HOM05D006626 ORTHO05D007352 1.5e-95 353.6 309 64.4
Thecc.05G040800 Theobroma cacao HOM05D006626 ORTHO05D007352 2.0e-95 353.2 307 64.8
Duzib093G0902 Durio zibethinus HOM05D006626 ORTHO05D007352 7.4e-95 351.3 309 64.4
Manes.09G089800 Manihot esculenta HOM05D006626 ORTHO05D007352 4.8e-94 348.6 303 64.4
MELO3C009261.2 Cucumis melo HOM05D006626 ORTHO05D007352 1.4e-93 347.1 300 64.3
RcHm_v2.0_Chr3g0466791 Rosa chinensis HOM05D006626 ORTHO05D007352 1.8e-93 346.7 291 65.6
Ciclev10012389m.g Citrus clementina HOM05D006626 ORTHO05D007352 2.4e-93 346.3 319 61.8
Ca_11335_v3 Cicer arietinum L. HOM05D006626 ORTHO05D007352 1.2e-92 344.0 300 61.7
FvH4_6g13970 Fragaria vesca HOM05D006626 ORTHO05D007352 1.6e-92 343.6 296 65.2
FAN14G0594 Fragaria x ananassa HOM05D006626 ORTHO05D007352 1.3e-91 340.5 296 64.9
FAN02G1739 Fragaria x ananassa HOM05D006626 ORTHO05D007352 3.8e-91 339.0 296 64.5
Glyma.08G358600 Glycine max HOM05D006626 ORTHO05D007352 6.5e-91 338.2 301 62.5
FAN05G2294 Fragaria x ananassa HOM05D006626 ORTHO05D007352 4.2e-90 335.5 296 64.2
FAN09G4835 Fragaria x ananassa HOM05D006626 ORTHO05D007352 4.2e-90 335.5 296 64.2
TWI74G0730 Tripterygium wilfordii HOM05D006626 ORTHO05D007352 1.2e-89 334.0 312 61.9
arahy.Tifrunner.gnm1.ann1.BMK4YH Arachis hypogaea HOM05D006626 ORTHO05D007352 2.1e-89 333.2 305 61.0
PGSC0003DMG400008843 Solanum tuberosum HOM05D006626 ORTHO05D007352 2.1e-89 333.2 321 60.1
Sopen09g005420 Solanum pennellii HOM05D006626 ORTHO05D007352 2.7e-89 332.8 321 59.8
Solyc09g010710.4 Solanum lycopersicum HOM05D006626 ORTHO05D007352 3.6e-89 332.4 320 60.0
Medtr7g060340 Medicago truncatula HOM05D006626 ORTHO05D007352 6.1e-89 331.6 324 58.3
arahy.Tifrunner.gnm1.ann1.DD5A1S Arachis hypogaea HOM05D006626 ORTHO05D007352 3.0e-88 329.3 305 60.3
Phvul.008G100000 Phaseolus vulgaris HOM05D006626 ORTHO05D007352 1.2e-87 327.4 303 59.7
Rhsim05G0191600 Rhododendron simsii HOM05D006626 ORTHO05D007352 2.0e-87 326.6 298 64.1
Cc06_g02710 Coffea canephora HOM05D006626 ORTHO05D007352 9.7e-87 324.3 310 61.9
PSO339G0986 Papaver somniferum HOM05D006626 ORTHO05D007352 9.7e-87 324.3 337 57.0
Lj1g0010963 Lotus japonicus HOM05D006626 ORTHO05D007352 1.7e-86 323.6 333 57.4
PSO384G0023 Papaver somniferum HOM05D006626 ORTHO05D007352 2.8e-86 322.8 325 57.5
Actinidia26461 Actinidia chinensis HOM05D006626 ORTHO05D007352 4.8e-86 322.0 309 61.5
Aqoxy4G02911 Aquilegia oxysepala HOM05D006626 ORTHO05D007352 7.7e-84 314.7 307 59.3
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.5e-83 311.6 273 63.7
VMungo1383G0921 Vigna mungo HOM05D006626 ORTHO05D007352 5.5e-82 308.5 288 60.1
Sc20g0004680 Simmondsia chinensis HOM05D006626 ORTHO05D007352 9.4e-82 307.8 310 56.8
THA.LOC104816277 Tarenaya hassleriana HOM05D006626 ORTHO05D007352 1.6e-81 307.0 329 55.0
CDE09G1242 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 3.6e-81 305.8 281 60.9
Aa31sc277G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 6.1e-81 305.1 308 57.8
Aa31LG3G1920 Aethionema arabicum HOM05D006626 ORTHO05D007352 1.8e-80 303.5 307 57.7
Sabra06G0064100 Salix brachista HOM05D006626 ORTHO05D007352 1.8e-80 303.5 296 59.8
MSTRG.19088 Avicennia marina HOM05D006626 ORTHO05D007352 1.5e-79 300.4 309 57.6
HanXRQChr04g0124851 Helianthus annuus HOM05D006626 ORTHO05D007352 3.4e-79 299.3 289 58.8
AL3G20610 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 7.5e-79 298.1 290 59.0
AT3G09430 Arabidopsis thaliana HOM05D006626 ORTHO05D007352 7.5e-79 298.1 298 56.7
CARHR083840 Cardamine hirsuta HOM05D006626 ORTHO05D007352 7.5e-79 298.1 320 55.3
CAN.G326.19 Capsicum annuum HOM05D006626 ORTHO05D007352 9.8e-79 297.7 267 61.4
Migut.J00335 Erythranthe guttata HOM05D006626 ORTHO05D007352 9.8e-79 297.7 300 58.0
Peaxi162Scf00165g01519 Petunia axillaris HOM05D006626 ORTHO05D007352 9.8e-79 297.7 311 58.5
Carub.0003s0853 Capsella rubella HOM05D006626 ORTHO05D007352 2.2e-78 296.6 289 58.1
Sp3g07800 Schrenkiella parvula HOM05D006626 ORTHO05D007352 4.8e-78 295.4 300 58.3
MBI14_g37824_MAGBIO Magnolia biondii HOM05D006626 ORTHO05D007352 5.4e-77 292.0 304 56.9
SGA_v2.0_scaffold126G33791 Striga asiatica HOM05D006626 ORTHO05D007352 5.4e-77 292.0 301 56.5
Thhalv10021243m.g Eutrema salsugineum HOM05D006626 ORTHO05D007352 1.2e-76 290.8 303 56.4
Nitab4.5_0003552g0020 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.8e-75 285.8 294 56.8
Nitab4.5_0005449g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 3.8e-75 285.8 296 57.8
SHI12668 Sapria himalayana HOM05D006626 ORTHO05D007352 3.8e-75 285.8 293 56.3
ECA236G0397 Erigeron canadensis HOM05D006626 ORTHO05D007352 6.6e-75 285.0 297 56.2
Peaxi162Scf00710g00212 Petunia axillaris HOM05D006626 ORTHO05D007352 8.6e-75 284.6 286 59.4
Nitab4.5_0005575g0040 Nicotiana tabacum HOM05D006626 ORTHO05D007352 1.5e-74 283.9 318 54.4
BcaC05g29673 Brassica carinata HOM05D006626 ORTHO05D007352 1.9e-74 283.5 348 50.0
Potri.006G084500 Populus trichocarpa HOM05D006626 ORTHO05D007352 1.9e-74 283.5 288 58.7
BraA05t22736Z Brassica rapa HOM05D006626 ORTHO05D007352 3.3e-74 282.7 297 56.2
Oeu049236.1 Olea europaea HOM05D006626 ORTHO05D007352 2.1e-73 280.0 294 57.8
Ah.08g212230 Amaranthus hybridus HOM05D006626 ORTHO05D007352 4.7e-73 278.9 300 52.7
A05p39550 Brassica napus HOM05D006626 ORTHO05D007352 8.0e-73 278.1 341 51.6
BolC5t34508H Brassica oleracea HOM05D006626 ORTHO05D007352 3.0e-72 276.2 349 51.6
ClCG10G021100 Citrullus lanatus HOM05D006626 ORTHO05D007352 2.0e-71 273.5 300 55.0
ATR0559G191 Amborella trichopoda HOM05D006626 ORTHO05D007352 7.5e-71 271.6 286 53.1
C05p58580 Brassica napus HOM05D006626 ORTHO05D007352 7.0e-69 265.0 391 46.0
Prupe.6G253700 Prunus persica HOM05D006626 ORTHO05D007352 2.9e-67 259.6 252 61.5
Lsat_1_v5_gn_8_82780 Lactuca sativa HOM05D006626 ORTHO05D007352 2.3e-64 250.0 315 49.5
Eucgr.K03142 Eucalyptus grandis HOM05D006626 ORTHO05D007352 3.0e-59 233.0 129 86.0
EL10Ac7g17297 Beta vulgaris HOM05D006626 ORTHO05D007352 8.6e-59 231.5 285 47.7
DCAR_014846 Daucus carota HOM05D006626 ORTHO05D007352 2.1e-52 210.3 111 89.2
AUR62040984 Chenopodium quinoa HOM05D006626 ORTHO05D007352 2.7e-52 209.9 109 85.3
Zm00001eb105220 Zea mays HOM05D006626 ORTHO05D007352 3.9e-51 206.1 301 44.5
Os07g0695700 Oryza sativa ssp. japonica HOM05D006626 ORTHO05D007352 3.3e-50 203.0 276 43.8
HPP92_012592 Vanilla planifolia HOM05D006626 ORTHO05D007352 3.3e-50 203.0 109 86.2
Mapoly0001s0170 Marchantia polymorpha HOM05D006626 ORTHO05D007352 1.3e-46 191.0 150 64.0
Dinv35614 Davidia involucrata HOM05D006626 ORTHO05D007352 3.7e-46 189.5 214 53.7
Haze_20773 Corylus avellana HOM05D003752 ORTHO05D004537 1.1e-45 188.0 237 47.7
Nitab4.5_0000761g0070 Nicotiana tabacum HOM05D006626 ORTHO05D007352 7.1e-45 185.3 98 89.8
AUR62042106 Chenopodium quinoa HOM05D006626 ORTHO05D007352 9.2e-45 184.9 98 84.7
QL93p0107_0195 Quercus lobata HOM05D006626 ORTHO05D007352 2.7e-44 183.3 124 73.4
QL01p055053 Quercus lobata HOM05D006626 ORTHO05D007352 7.8e-44 181.8 98 85.7
AagrBONN_evm.TU.Sc2ySwM_362.1793 Anthoceros agrestis HOM05D006626 ORTHO05D007352 5.6e-42 175.6 127 63.8
Hund12078 Selenicereus undatus HOM05D006626 ORTHO05D007352 1.8e-40 170.6 88 87.5
Psat3g141480 Pisum sativum HOM05D006626 ORTHO05D007352 3.1e-40 169.9 207 49.8
CBR_g84850 Chara braunii HOM05D006626 ORTHO05D007352 1.7e-38 164.1 140 56.4
Cpa.g.sc188.15 Carica papaya HOM05D006626 ORTHO05D007352 1.2e-36 157.9 221 49.8
Atru.chr11.672 Acer truncatum HOM05D006626 ORTHO05D007352 1.6e-36 157.5 98 77.6
SEGI_14743 Sequoiadendron giganteum HOM05D006626 ORTHO05D007352 2.3e-35 153.7 98 72.4
AL614U10010 Arabidopsis lyrata HOM05D006626 ORTHO05D007352 3.0e-27 126.7 202 44.6
Nitab4.5_0027058g0010 Nicotiana tabacum HOM05D006626 ORTHO05D007352 4.5e-23 112.8 198 41.9
Aa31sc161G10 Aethionema arabicum HOM05D006626 ORTHO05D007352 3.0e-19 100.1 193 40.9
MD02G1131100 Malus domestica HOM05D006626 ORTHO05D007352 5.1e-19 99.4 106 56.6
MD05G1218700 Malus domestica HOM05D006626 ORTHO05D007352 5.1e-19 99.4 106 56.6
MD16G1182100 Malus domestica HOM05D006626 ORTHO05D007352 5.1e-19 99.4 106 56.6
MD15G1437500 Malus domestica HOM05D006626 ORTHO05D007352 8.7e-19 98.6 106 56.6
SGA_v2.0_scaffold18G08259 Striga asiatica HOM05D006626 ORTHO05D007352 6.4e-14 82.4 82 54.9
arahy.Tifrunner.gnm1.ann1.9RDP1W Arachis hypogaea HOM05D003961 ORTHO05D007352 3.2e-13 80.1 110 47.3
AUR62042107 Chenopodium quinoa HOM05D006626 ORTHO05D007352 4.2e-13 79.7 195 35.4
QL01p053860 Quercus lobata HOM05D006626 ORTHO05D007352 1.2e-12 78.2 41 85.4
arahy.Tifrunner.gnm1.ann1.MM579M Arachis hypogaea HOM05D001890 ORTHO05D003442 1.6e-12 77.8 111 44.1
CDE02G2228 Ceratophyllum demersum HOM05D006626 ORTHO05D007352 7.9e-12 75.5 115 44.3
TAR633G2221 Trochodendron aralioides HOM05D006626 ORTHO05D007352 9.6e-10 68.6 44 70.5
AUR62040983 Chenopodium quinoa HOM05D006626 ORTHO05D007352 2.1e-09 67.4 199 32.7


User provided reference genes

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