Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0608 Cannabis sativa HOM05D004787 ORTHO05D006972 7.0e-276 953.4 495 100.0
Duzib138G0253 Durio zibethinus HOM05D004787 ORTHO05D006972 4.5e-230 801.2 516 81.2
VMungo0540G0637 Vigna mungo HOM05D004787 ORTHO05D006972 7.6e-230 800.4 486 84.6
Gorai.008G054500 Gossypium raimondii HOM05D004787 ORTHO05D006972 1.3e-229 799.7 525 79.8
Gohir.A12G052700 Gossypium hirsutum HOM05D004787 ORTHO05D006972 2.2e-229 798.9 525 79.8
MD11G1181900 Malus domestica HOM05D004787 ORTHO05D006972 3.8e-229 798.1 527 80.6
Gohir.D12G051200 Gossypium hirsutum HOM05D004787 ORTHO05D006972 4.9e-229 797.7 525 79.6
Thecc.04G058600 Theobroma cacao HOM05D004787 ORTHO05D006972 1.9e-228 795.8 514 80.7
Ciclev10011482m.g Citrus clementina HOM05D004787 ORTHO05D006972 2.7e-227 792.0 519 80.9
Psat5g143840 Pisum sativum HOM05D004787 ORTHO05D006972 3.5e-227 791.6 525 77.7
Nn4g24844 Nelumbo nucifera HOM05D004787 ORTHO05D006972 1.8e-226 789.3 524 78.1
TWI53G0480 Tripterygium wilfordii HOM05D004787 ORTHO05D006972 1.8e-226 789.3 508 80.9
Ca_15115_v3 Cicer arietinum L. HOM05D004787 ORTHO05D006972 3.9e-226 788.1 531 77.2
Manes.02G082200 Manihot esculenta HOM05D004787 ORTHO05D006972 5.1e-226 787.7 531 78.9
Lalb_Chr18g0053891 Lupinus albus HOM05D004787 ORTHO05D006972 1.1e-225 786.6 500 81.2
QL02p054528 Quercus lobata HOM05D004787 ORTHO05D006972 3.3e-225 785.0 511 80.6
Phvul.006G085100 Phaseolus vulgaris HOM05D004787 ORTHO05D006972 4.3e-225 784.6 526 78.5
Prupe.3G013000 Prunus persica HOM05D004787 ORTHO05D006972 5.7e-225 784.3 529 78.1
TPR.G37333 Trifolium pratense HOM05D004787 ORTHO05D006972 5.7e-225 784.3 528 77.1
Medtr3g064180 Medicago truncatula HOM05D004787 ORTHO05D006972 1.3e-224 783.1 522 78.2
Lj6g0012338 Lotus japonicus HOM05D004787 ORTHO05D006972 2.8e-224 781.9 506 79.6
arahy.Tifrunner.gnm1.ann1.0Y5IZW Arachis hypogaea HOM05D004787 ORTHO05D006972 3.7e-224 781.6 542 76.2
Glyma.18G045800 Glycine max HOM05D004787 ORTHO05D006972 4.8e-224 781.2 518 79.2
Atru.chr1.1965 Acer truncatum HOM05D004787 ORTHO05D006972 1.1e-223 780.0 505 80.6
arahy.Tifrunner.gnm1.ann1.QP3PIR Arachis hypogaea HOM05D004787 ORTHO05D006972 1.1e-223 780.0 546 75.6
Hma1.2p1_0034F.1_g021480 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 5.3e-223 777.7 529 77.3
Cfa008000 Carpinus fangiana HOM05D004787 ORTHO05D006972 6.9e-223 777.3 533 77.9
TAR629G0710 Trochodendron aralioides HOM05D004787 ORTHO05D006972 6.9e-223 777.3 521 77.0
Lj4C250G12 Lonicera japonica HOM05D004787 ORTHO05D006972 2.6e-222 775.4 495 80.2
CsaV3_5G024370 Cucumis sativus L. HOM05D004787 ORTHO05D006972 7.6e-222 773.9 517 78.3
CiPaw.03G008000 Carya illinoinensis HOM05D004787 ORTHO05D006972 2.2e-221 772.3 532 77.8
Haze_14069 Corylus avellana HOM05D004787 ORTHO05D006972 2.2e-221 772.3 533 77.7
MELO3C025106.2 Cucumis melo HOM05D004787 ORTHO05D006972 3.8e-221 771.5 519 77.5
ClCG01G008420 Citrullus lanatus HOM05D004787 ORTHO05D006972 5.0e-221 771.2 511 79.1
PSO063G5381 Papaver somniferum HOM05D004787 ORTHO05D006972 5.0e-221 771.2 518 77.6
RcHm_v2.0_Chr3g0487991 Rosa chinensis HOM05D004787 ORTHO05D006972 1.9e-220 769.2 521 77.9
CSS0018052 Camellia sinensis var. sinensis HOM05D004787 ORTHO05D006972 5.5e-220 767.7 503 79.3
Eucgr.F02919 Eucalyptus grandis HOM05D004787 ORTHO05D006972 1.2e-219 766.5 500 80.0
PSO782G3524 Papaver somniferum HOM05D004787 ORTHO05D006972 3.6e-219 765.0 518 76.6
PGR004G1381 Punica granatum HOM05D004787 ORTHO05D006972 7.9e-219 763.8 525 76.6
CDE05G1440 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 1.8e-218 762.7 522 75.5
AUR62037503 Chenopodium quinoa HOM05D004787 ORTHO05D006972 1.8e-218 762.7 491 80.0
Ah.04g162910 Amaranthus hybridus HOM05D004787 ORTHO05D006972 8.7e-218 760.4 476 81.9
Rhsim07G0211400 Rhododendron simsii HOM05D004787 ORTHO05D006972 1.1e-217 760.0 501 78.4
Hund06861 Selenicereus undatus HOM05D004787 ORTHO05D006972 4.3e-217 758.1 530 75.1
Dinv28256 Davidia involucrata HOM05D004787 ORTHO05D006972 1.8e-215 752.7 529 74.3
THA.LOC104820926 Tarenaya hassleriana HOM05D004787 ORTHO05D006972 9.1e-215 750.4 500 78.0
Aqoxy3G04198 Aquilegia oxysepala HOM05D004787 ORTHO05D006972 1.2e-214 750.0 501 78.0
DCAR_003396 Daucus carota HOM05D004787 ORTHO05D006972 2.6e-214 748.8 486 78.4
FvH4_1g27560 Fragaria vesca HOM05D004787 ORTHO05D006972 1.0e-213 746.9 516 75.8
FAN28G1537 Fragaria x ananassa HOM05D004787 ORTHO05D006972 1.3e-213 746.5 530 74.0
FAN19G0382 Fragaria x ananassa HOM05D004787 ORTHO05D006972 3.2e-212 741.9 508 76.2
Lsat_1_v5_gn_3_69520 Lactuca sativa HOM05D004787 ORTHO05D006972 5.5e-212 741.1 541 71.7
FAN28G1012 Fragaria x ananassa HOM05D004787 ORTHO05D006972 4.6e-211 738.0 512 74.8
FAN26G3076 Fragaria x ananassa HOM05D004787 ORTHO05D006972 7.9e-211 737.3 512 74.8
EL10Ac4g08906 Beta vulgaris HOM05D004787 ORTHO05D006972 1.0e-210 736.9 502 76.3
MBI06_g02537_MAGBIO Magnolia biondii HOM05D004787 ORTHO05D006972 8.8e-210 733.8 532 72.9
Solyc02g081410.3 Solanum lycopersicum HOM05D004787 ORTHO05D006972 4.4e-209 731.5 500 75.4
Sopen02g026040 Solanum pennellii HOM05D004787 ORTHO05D006972 1.3e-208 729.9 500 75.2
PGSC0003DMG400019729 Solanum tuberosum HOM05D004787 ORTHO05D006972 4.8e-208 728.0 500 75.0
Sabra04G0050800 Salix brachista HOM05D004787 ORTHO05D006972 3.4e-206 721.8 520 72.1
Thhalv10020476m.g Eutrema salsugineum HOM05D004787 ORTHO05D006972 7.7e-206 720.7 539 71.1
MSTRG.15622 Avicennia marina HOM05D004787 ORTHO05D006972 1.0e-205 720.3 501 74.5
SGA_v2.0_scaffold45G17100 Striga asiatica HOM05D004787 ORTHO05D006972 1.7e-205 719.5 508 74.2
AL3G12100 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 3.8e-205 718.4 501 75.2
AT3G02710 Arabidopsis thaliana HOM05D004787 ORTHO05D006972 5.0e-205 718.0 501 74.9
ECA246G0632 Erigeron canadensis HOM05D004787 ORTHO05D006972 6.5e-205 717.6 518 70.5
Migut.K00983 Erythranthe guttata HOM05D004787 ORTHO05D006972 1.1e-204 716.8 499 74.5
Carub.0003s0181 Capsella rubella HOM05D004787 ORTHO05D006972 1.4e-204 716.5 501 74.7
Potri.004G076600 Populus trichocarpa HOM05D004787 ORTHO05D006972 1.9e-204 716.1 534 70.2
Sp3g01740 Schrenkiella parvula HOM05D004787 ORTHO05D006972 3.6e-203 711.8 501 74.3
HanXRQChr16g0532401 Helianthus annuus HOM05D004787 ORTHO05D006972 1.8e-202 709.5 519 71.3
BNapus_Darmor_BZH_scaffold_99p00220 Brassica napus HOM05D004787 ORTHO05D006972 8.8e-202 707.2 501 74.1
Peaxi162Scf00344g02023 Petunia axillaris HOM05D004787 ORTHO05D006972 2.6e-201 705.7 486 74.9
Aa31LG5G13180 Aethionema arabicum HOM05D004787 ORTHO05D006972 9.7e-201 703.7 527 71.0
CARHR076710 Cardamine hirsuta HOM05D004787 ORTHO05D006972 9.7e-201 703.7 535 71.0
BraA01t04622Z Brassica rapa HOM05D004787 ORTHO05D006972 3.7e-200 701.8 517 71.8
Actinidia40400 Actinidia chinensis HOM05D004787 ORTHO05D006972 4.8e-200 701.4 538 69.5
BolC1t05882H Brassica oleracea HOM05D004787 ORTHO05D006972 4.8e-200 701.4 511 72.2
vmacro20447 Vaccinium macrocarpon HOM05D004787 ORTHO05D006972 1.1e-199 700.3 593 64.6
AUR62004748 Chenopodium quinoa HOM05D004787 ORTHO05D006972 2.0e-198 696.0 497 73.8
Sed0001995 Sechium edule HOM05D004787 ORTHO05D006972 1.3e-197 693.3 463 78.2
ATR0618G058 Amborella trichopoda HOM05D004787 ORTHO05D006972 9.4e-196 687.2 494 73.1
SalBow5G5112 Salvia bowleyana HOM05D004787 ORTHO05D006972 2.1e-195 686.0 472 75.4
SEGI_38823 Sequoiadendron giganteum HOM05D004787 ORTHO05D006972 2.7e-195 685.6 518 69.3
Nitab4.5_0003412g0040 Nicotiana tabacum HOM05D004787 ORTHO05D006972 3.7e-192 675.2 631 60.5
COL.COLO4_06952 Corchorus olitorius HOM05D004787 ORTHO05D006972 2.2e-189 666.0 413 82.3
Nitab4.5_0000483g0190 Nicotiana tabacum HOM05D004787 ORTHO05D006972 2.0e-182 642.9 577 62.4
Hma1.2p1_0034F.1_g021490 Hydrangea macrophylla HOM05D004787 ORTHO05D006972 2.4e-175 619.4 424 76.4
Zm00001eb259490 Zea mays HOM05D004787 ORTHO05D006972 3.5e-174 615.5 518 63.3
Os02g0831300 Oryza sativa ssp. japonica HOM05D004787 ORTHO05D006972 5.0e-173 611.7 516 63.4
unitig_32.g10735 Utricularia gibba HOM05D004787 ORTHO05D006972 2.5e-172 609.4 583 58.3
Mapoly0108s0041 Marchantia polymorpha HOM05D004787 ORTHO05D006972 1.2e-171 607.1 501 63.3
Pp3c23_13180 Physcomitrium patens HOM05D004787 ORTHO05D006972 5.4e-167 591.7 509 60.9
Pp3c23_13183 Physcomitrium patens HOM05D004787 ORTHO05D006972 5.4e-167 591.7 509 60.9
Cpa.g.sc108.2 Carica papaya HOM05D004787 ORTHO05D006972 7.5e-161 571.2 365 81.6
Sc09g0004590 Simmondsia chinensis HOM05D004787 ORTHO05D006972 4.9e-160 568.5 423 71.4
AagrBONN_evm.TU.Sc2ySwM_228.1941__1942 Anthoceros agrestis HOM05D004787 ORTHO05D006972 1.1e-159 567.4 443 65.9
CBR_g66787 Chara braunii HOM05D004787 ORTHO05D006972 1.4e-151 540.4 518 55.0
HPP92_022084 Vanilla planifolia HOM05D004787 ORTHO05D006972 4.6e-150 535.4 360 76.4
SMO276G0035 Selaginella moellendorffii HOM05D004787 ORTHO05D006972 6.6e-149 531.6 480 58.3
CAN.G809.96 Capsicum annuum HOM05D004787 ORTHO05D006972 3.4e-145 519.2 327 80.1
Oeu022144.1 Olea europaea HOM05D004787 ORTHO05D006972 1.4e-143 513.8 349 76.2
BNapus_Darmor_BZH_scaffold_122p00190 Brassica napus HOM05D004787 ORTHO05D006972 1.4e-138 497.3 360 72.2
Lsat_1_v5_gn_3_69560 Lactuca sativa HOM05D004787 ORTHO05D006972 1.2e-113 414.5 321 67.9
HanXRQChr16g0532221 Helianthus annuus HOM05D004787 ORTHO05D006972 3.0e-109 399.8 395 58.5
Cre02.g093300 Chlamydomonas reinhardtii HOM05D004787 ORTHO05D006972 6.7e-101 372.1 516 42.4
GSVIVG01035282001 Vitis vinifera HOM05D004787 ORTHO05D006972 5.9e-97 359.0 249 74.3
GSVIVG01001945001 Vitis vinifera HOM05D004787 ORTHO05D006972 3.8e-96 356.3 249 73.9
MCO05G673 Micromonas commoda HOM05D004787 ORTHO05D006972 5.7e-92 342.4 483 41.6
AL1G49080 Arabidopsis lyrata HOM05D004787 ORTHO05D006972 2.3e-85 320.5 240 71.2
CDE02G3895 Ceratophyllum demersum HOM05D004787 ORTHO05D006972 9.1e-82 308.5 334 54.5
PRCOL_00000524 Prasinoderma coloniale HOM05D004787 ORTHO05D006972 3.8e-80 303.1 490 37.1
Cc07_g12650 Coffea canephora HOM05D004787 ORTHO05D006972 2.2e-59 234.2 152 77.0
PSO409G0053 Papaver somniferum HOM05D004787 ORTHO05D006972 3.5e-49 200.3 504 33.1
Oeu031707.1 Olea europaea HOM05D004787 ORTHO05D006972 1.2e-46 191.8 113 86.7
Cfa023088 Carpinus fangiana HOM05D004787 ORTHO05D006972 1.2e-44 185.3 509 32.2
Medtr8g023320 Medicago truncatula HOM05D004787 ORTHO05D006972 2.4e-42 177.6 115 77.4
PSO339G1514 Papaver somniferum HOM05D004787 ORTHO05D303367 2.4e-42 177.6 486 32.5
Cpa.g.sc108.3 Carica papaya HOM05D004787 ORTHO05D006972 2.5e-39 167.5 507 30.8
PSO478G0028 Papaver somniferum HOM05D004787 ORTHO05D006972 8.3e-35 152.5 286 39.5
PSO675G3772 Papaver somniferum HOM05D004787 ORTHO05D302583 1.7e-32 144.8 460 31.3
PSO409G0034 Papaver somniferum HOM05D004787 ORTHO05D006972 6.8e-29 132.9 486 29.8
HPP92_022083 Vanilla planifolia HOM05D004787 ORTHO05D006972 2.9e-27 127.5 86 69.8
PSO407G0282 Papaver somniferum HOM05D004787 ORTHO05D006972 3.8e-27 127.1 464 29.7
PSO675G0768 Papaver somniferum HOM05D004787 ORTHO05D302482 3.6e-22 110.5 265 32.1
PSO063G0274 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-21 108.6 326 32.8
PSO339G2032 Papaver somniferum HOM05D004787 ORTHO05D006972 2.4e-21 107.8 293 32.8
PSO339G2591 Papaver somniferum HOM05D004787 ORTHO05D006972 5.3e-21 106.7 285 33.7
Zm00001eb168130 Zea mays HOM05D004787 ORTHO05D001664 1.2e-20 105.5 74 66.2
PSO541G2889 Papaver somniferum HOM05D004787 ORTHO05D303989 4.4e-20 103.6 211 34.6
PSO063G0043 Papaver somniferum HOM05D004787 ORTHO05D006972 1.1e-18 99.0 334 29.9
PSO675G1486 Papaver somniferum HOM05D004787 ORTHO05D006972 1.4e-18 98.6 298 29.5
PSO541G6299 Papaver somniferum HOM05D004787 ORTHO05D302708 4.2e-18 97.1 303 30.4
PSO478G4874 Papaver somniferum HOM05D004787 ORTHO05D006972 2.7e-17 94.4 228 35.5
PSO198G0032 Papaver somniferum HOM05D004787 ORTHO05D006972 1.3e-16 92.0 204 34.8
PSO063G3648 Papaver somniferum HOM05D004787 ORTHO05D006972 3.9e-16 90.5 140 39.3
PSO063G5300 Papaver somniferum HOM05D004787 ORTHO05D006972 5.1e-16 90.1 157 36.9
HanXRQChr16g0532231 Helianthus annuus HOM05D004787 ORTHO05D006972 8.7e-16 89.4 59 69.5
PSO478G2704 Papaver somniferum HOM05D004787 ORTHO05D303020 1.1e-13 82.4 356 28.1
PSO063G1019 Papaver somniferum HOM05D004787 ORTHO05D006972 5.3e-13 80.1 141 38.3
PSO478G1956 Papaver somniferum HOM05D004787 ORTHO05D006972 1.5e-12 78.6 200 35.0
PSO063G2684 Papaver somniferum HOM05D004787 ORTHO05D304724 3.8e-11 73.9 412 27.4
PSO063G4343 Papaver somniferum HOM05D004787 ORTHO05D304254 4.9e-11 73.6 427 26.0
PSO170G0972 Papaver somniferum HOM05D004787 ORTHO05D303930 4.2e-10 70.5 319 27.3
PSO384G4943 Papaver somniferum HOM05D004787 ORTHO05D303805 1.3e-08 65.5 232 31.5
PSO384G2298 Papaver somniferum HOM05D004787 ORTHO05D006972 6.7e-08 63.2 135 34.8
RcHm_v2.0_Chr5g0002281 Rosa chinensis HOM05D003404 ORTHO05D029456 5.6e-07 60.1 32 84.4
FAN21G2314 Fragaria x ananassa HOM05D027463 ORTHO05D206097 4.8e-06 57.0 48 60.4
FAN24G2421 Fragaria x ananassa HOM05D000203 ORTHO05D035425 8.1e-06 56.2 103 38.8


User provided reference genes

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