Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0603 Cannabis sativa HOM05D004462 ORTHO05D005231 5.6e-80 300.8 146 100.0
COL.COLO4_16416 Corchorus olitorius HOM05D004462 ORTHO05D005231 1.9e-64 249.2 139 82.0
Ciclev10013005m.g Citrus clementina HOM05D004462 ORTHO05D005231 4.3e-64 248.1 141 81.6
PGR044G0250 Punica granatum HOM05D004462 ORTHO05D005231 1.3e-63 246.5 143 79.7
Sp5g20770 Schrenkiella parvula HOM05D004462 ORTHO05D005231 1.1e-62 243.4 143 77.6
CARHR057680 Cardamine hirsuta HOM05D004462 ORTHO05D005231 3.1e-62 241.9 146 75.3
TWI53G1401 Tripterygium wilfordii HOM05D004462 ORTHO05D005231 4.0e-62 241.5 143 76.2
CARHR215890 Cardamine hirsuta HOM05D004462 ORTHO05D005231 5.3e-62 241.1 143 77.6
QL02p063959 Quercus lobata HOM05D004462 ORTHO05D005231 5.3e-62 241.1 139 80.6
AT1G65820 Arabidopsis thaliana HOM05D004462 ORTHO05D005231 9.0e-62 240.4 142 77.5
BcaC03g14720 Brassica carinata HOM05D004462 ORTHO05D005231 1.5e-61 239.6 143 76.9
A02p13370 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-61 239.6 143 76.9
C02p21630 Brassica napus HOM05D004462 ORTHO05D005231 1.5e-61 239.6 143 76.9
AL2G23110 Arabidopsis lyrata HOM05D004462 ORTHO05D005231 2.0e-61 239.2 139 78.4
BcaB05g24136 Brassica carinata HOM05D004462 ORTHO05D005231 2.0e-61 239.2 143 77.6
Sp7g05300 Schrenkiella parvula HOM05D004462 ORTHO05D005231 2.0e-61 239.2 146 76.0
Hma1.2p1_0085F.1_g043860 Hydrangea macrophylla HOM05D004462 ORTHO05D005231 3.4e-61 238.4 145 75.2
THA.LOC104805662 Tarenaya hassleriana HOM05D004462 ORTHO05D005231 4.5e-61 238.0 143 75.5
Eucgr.F02921 Eucalyptus grandis HOM05D004462 ORTHO05D005231 2.2e-60 235.7 137 78.8
Manes.02G082400 Manihot esculenta HOM05D004462 ORTHO05D005231 2.2e-60 235.7 144 76.4
A06p23000 Brassica napus HOM05D004462 ORTHO05D005231 2.9e-60 235.3 143 74.8
MD09G1269000 Malus domestica HOM05D004462 ORTHO05D005231 2.9e-60 235.3 142 74.6
Thecc.08G108000 Theobroma cacao HOM05D004462 ORTHO05D005231 2.9e-60 235.3 143 74.8
BcaB04g19159 Brassica carinata HOM05D004462 ORTHO05D005231 4.9e-60 234.6 143 72.7
Duzib138G0229 Durio zibethinus HOM05D004462 ORTHO05D005231 6.4e-60 234.2 139 76.3
Thhalv10027981m.g Eutrema salsugineum HOM05D004462 ORTHO05D005231 6.4e-60 234.2 143 76.2
BcaC02g09558 Brassica carinata HOM05D004462 ORTHO05D005231 1.1e-59 233.4 143 75.5
A04p10520 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-59 233.4 143 75.5
C04p44160 Brassica napus HOM05D004462 ORTHO05D005231 1.1e-59 233.4 143 75.5
BraA02t06395Z Brassica rapa HOM05D004462 ORTHO05D005231 1.1e-59 233.4 148 74.3
Haze_14345 Corylus avellana HOM05D004462 ORTHO05D005231 1.1e-59 233.4 145 75.2
Duzib128G1697 Durio zibethinus HOM05D004462 ORTHO05D005231 1.4e-59 233.0 139 75.5
Atru.chr1.1966 Acer truncatum HOM05D004462 ORTHO05D005231 1.9e-59 232.6 137 78.1
Prupe.3G165500 Prunus persica HOM05D004462 ORTHO05D005231 2.4e-59 232.3 142 74.6
EL10Ac4g08901 Beta vulgaris HOM05D004462 ORTHO05D005231 5.4e-59 231.1 147 73.5
Dinv28268 Davidia involucrata HOM05D004462 ORTHO05D005231 7.1e-59 230.7 146 74.7
Nitab4.5_0000483g0160 Nicotiana tabacum HOM05D004462 ORTHO05D005231 7.1e-59 230.7 146 71.9
Carub.0002s1171 Capsella rubella HOM05D004462 ORTHO05D005231 1.6e-58 229.6 143 72.0
BolC2t08300H Brassica oleracea HOM05D004462 ORTHO05D005231 2.1e-58 229.2 159 69.2
Cfa007736 Carpinus fangiana HOM05D004462 ORTHO05D005231 4.6e-58 228.0 145 73.8
MD17G1267400 Malus domestica HOM05D004462 ORTHO05D005231 6.0e-58 227.6 142 73.2
Peaxi162Scf00344g01910 Petunia axillaris HOM05D004462 ORTHO05D005231 6.0e-58 227.6 146 71.9
Sc09g0004600 Simmondsia chinensis HOM05D004462 ORTHO05D005231 6.0e-58 227.6 140 74.3
Sabra17G0118400 Salix brachista HOM05D004462 ORTHO05D005231 7.9e-58 227.3 144 75.0
MSTRG.15620 Avicennia marina HOM05D004462 ORTHO05D005231 1.0e-57 226.9 146 69.2
Cc00_g30600 Coffea canephora HOM05D004462 ORTHO05D005231 1.0e-57 226.9 146 74.0
Cc02_g03200 Coffea canephora HOM05D004462 ORTHO05D005231 1.0e-57 226.9 146 74.0
Potri.017G140900 Populus trichocarpa HOM05D004462 ORTHO05D005231 1.3e-57 226.5 143 72.7
AUR62037507 Chenopodium quinoa HOM05D004462 ORTHO05D005231 3.0e-57 225.3 141 72.3
Solyc02g081430.3 Solanum lycopersicum HOM05D004462 ORTHO05D005231 3.9e-57 224.9 146 67.8
Sopen02g026070 Solanum pennellii HOM05D004462 ORTHO05D005231 6.7e-57 224.2 146 67.8
PGSC0003DMG400019728 Solanum tuberosum HOM05D004462 ORTHO05D005231 6.7e-57 224.2 146 67.1
AUR62004745 Chenopodium quinoa HOM05D004462 ORTHO05D005231 1.1e-56 223.4 141 72.3
BraA04t16718Z Brassica rapa HOM05D004462 ORTHO05D005231 1.5e-56 223.0 162 67.3
CAN.G809.94 Capsicum annuum HOM05D004462 ORTHO05D005231 2.5e-56 222.2 144 68.1
Gohir.D07G184000 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.5e-56 222.2 138 74.6
Gohir.D08G048100 Gossypium hirsutum HOM05D004462 ORTHO05D005231 2.5e-56 222.2 139 73.4
Gorai.001G204400 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.5e-56 222.2 138 74.6
Gorai.004G047600 Gossypium raimondii HOM05D004462 ORTHO05D005231 2.5e-56 222.2 139 73.4
Gohir.A08G037800 Gossypium hirsutum HOM05D004462 ORTHO05D005231 3.3e-56 221.9 139 73.4
Aa31LG2G2630 Aethionema arabicum HOM05D000188 ORTHO05D000362 4.3e-56 221.5 171 63.7
RcHm_v2.0_Chr3g0491741 Rosa chinensis HOM05D004462 ORTHO05D005231 4.3e-56 221.5 140 71.4
Lalb_Chr10g0104001 Lupinus albus HOM05D004462 ORTHO05D005231 5.6e-56 221.1 139 72.7
Gohir.A07G176700 Gossypium hirsutum HOM05D004462 ORTHO05D005231 7.4e-56 220.7 138 73.9
Actinidia32995 Actinidia chinensis HOM05D004462 ORTHO05D005231 9.6e-56 220.3 146 69.2
ClCG03G008870 Citrullus lanatus HOM05D004462 ORTHO05D005231 9.6e-56 220.3 143 72.0
HPP92_011089 Vanilla planifolia HOM05D004462 ORTHO05D005231 9.6e-56 220.3 138 71.0
RcHm_v2.0_Chr3g0491671 Rosa chinensis HOM05D004462 ORTHO05D005231 1.3e-55 219.9 140 71.4
CsaV3_5G023890 Cucumis sativus L. HOM05D004462 ORTHO05D005231 1.6e-55 219.5 143 71.3
Sed0028045 Sechium edule HOM05D004462 ORTHO05D005231 1.6e-55 219.5 143 71.3
RcHm_v2.0_Chr3g0491701 Rosa chinensis HOM05D004462 ORTHO05D005231 3.7e-55 218.4 140 70.7
Carub.0007s3236 Capsella rubella HOM05D004462 ORTHO05D005231 6.2e-55 217.6 146 71.2
HPP92_011106 Vanilla planifolia HOM05D004462 ORTHO05D005231 8.1e-55 217.2 138 70.3
Sed0009749 Sechium edule HOM05D004462 ORTHO05D005231 1.1e-54 216.9 143 69.2
FvH4_1g30090 Fragaria vesca HOM05D004462 ORTHO05D005231 1.4e-54 216.5 140 68.6
FAN19G2026 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.4e-54 216.5 140 68.6
PSO063G2986 Papaver somniferum HOM05D004462 ORTHO05D005231 1.4e-54 216.5 143 69.9
LjContig00141g0019021 Lotus japonicus HOM05D004462 ORTHO05D005231 1.8e-54 216.1 139 72.7
Cpa.g.c42729 Carica papaya HOM05D004462 ORTHO05D005231 2.4e-54 215.7 121 79.3
Oeu002679.1 Olea europaea HOM05D004462 ORTHO05D005231 2.4e-54 215.7 142 68.3
PSO782G5040 Papaver somniferum HOM05D004462 ORTHO05D005231 3.1e-54 215.3 143 69.2
CiPaw.04G050400 Carya illinoinensis HOM05D004462 ORTHO05D005231 9.0e-54 213.8 133 72.2
arahy.Tifrunner.gnm1.ann1.TN4V22 Arachis hypogaea HOM05D004462 ORTHO05D005231 1.5e-53 213.0 139 72.7
CiPaw.03G079700 Carya illinoinensis HOM05D004462 ORTHO05D005231 2.0e-53 212.6 145 71.0
FAN23G0373 Fragaria x ananassa HOM05D004462 ORTHO05D005231 4.5e-53 211.5 140 66.4
Psat2g044120 Pisum sativum HOM05D004462 ORTHO05D005231 4.5e-53 211.5 139 71.9
Sabra04G0051800 Salix brachista HOM05D004462 ORTHO05D005231 5.8e-53 211.1 121 76.9
GSVIVG01001479001 Vitis vinifera HOM05D004462 ORTHO05D005231 7.6e-53 210.7 143 68.5
Os03g0709000 Oryza sativa ssp. japonica HOM05D004462 ORTHO05D005231 1.1e-51 206.8 138 67.4
Nn6g35012 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.9e-51 206.1 144 68.8
TPR.G5341 Trifolium pratense HOM05D004462 ORTHO05D005231 1.9e-51 206.1 138 71.7
HPP92_016581 Vanilla planifolia HOM05D004462 ORTHO05D005231 2.4e-51 205.7 144 63.9
Ca_17052_v3 Cicer arietinum L. HOM05D004462 ORTHO05D005231 4.2e-51 204.9 139 69.1
MBI12_g42585_MAGBIO Magnolia biondii HOM05D004462 ORTHO05D005231 5.5e-51 204.5 136 68.4
SalBow5G4757 Salvia bowleyana HOM05D004462 ORTHO05D005231 5.5e-51 204.5 146 62.3
Actinidia28772 Actinidia chinensis HOM05D004462 ORTHO05D005231 9.3e-51 203.8 143 65.0
Nn4g24876 Nelumbo nucifera HOM05D004462 ORTHO05D005231 9.3e-51 203.8 146 65.8
Medtr5g076470 Medicago truncatula HOM05D004462 ORTHO05D005231 1.2e-50 203.4 139 71.2
Lalb_Chr04g0251561 Lupinus albus HOM05D004462 ORTHO05D005231 2.7e-50 202.2 140 68.6
vmacro18490 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 2.7e-50 202.2 146 65.8
CDE05G2284 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 3.5e-50 201.8 141 66.7
Migut.K01204 Erythranthe guttata HOM05D004462 ORTHO05D005231 3.5e-50 201.8 142 64.1
Aqoxy3G04063 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 7.9e-50 200.7 143 66.4
BolC4t25991H Brassica oleracea HOM05D004462 ORTHO05D005231 1.0e-49 200.3 207 52.2
CSS0041519 Camellia sinensis var. sinensis HOM05D004462 ORTHO05D005231 2.3e-49 199.1 146 63.7
Hund06859 Selenicereus undatus HOM05D004462 ORTHO05D005231 8.7e-49 197.2 115 76.5
ATR0753G103 Amborella trichopoda HOM05D004462 ORTHO05D005231 1.1e-48 196.8 139 64.0
DCAR_003393 Daucus carota HOM05D004462 ORTHO05D005231 3.3e-48 195.3 143 60.1
FAN28G0360 Fragaria x ananassa HOM05D004462 ORTHO05D005231 1.3e-47 193.4 129 65.1
DCAR_003392 Daucus carota HOM05D004462 ORTHO05D005231 1.6e-47 193.0 146 61.6
Nn4g24875 Nelumbo nucifera HOM05D004462 ORTHO05D005231 1.6e-47 193.0 143 61.5
SMO115G0120 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 1.1e-46 190.3 137 62.8
DCAR_014136 Daucus carota HOM05D004462 ORTHO05D005231 3.1e-46 188.7 142 63.4
PSO210G6210 Papaver somniferum HOM05D004462 ORTHO05D005231 3.1e-46 188.7 121 67.8
MELO3C022821.2 Cucumis melo HOM05D004462 ORTHO05D005231 5.3e-46 188.0 121 71.1
Lsat_1_v5_gn_2_72161 Lactuca sativa HOM05D004462 ORTHO05D005231 5.3e-46 188.0 144 57.6
arahy.Tifrunner.gnm1.ann1.D1IGUM Arachis hypogaea HOM05D004462 ORTHO05D005231 1.2e-45 186.8 116 72.4
Zm00001eb054680 Zea mays HOM05D004462 ORTHO05D005231 1.5e-45 186.4 115 73.0
MD17G1267600 Malus domestica HOM05D004462 ORTHO05D005231 2.6e-45 185.7 112 73.2
arahy.Tifrunner.gnm1.ann1.3DVS1U Arachis hypogaea HOM05D004462 ORTHO05D005231 3.4e-45 185.3 116 71.6
Lsat_1_v5_gn_2_72121 Lactuca sativa HOM05D004462 ORTHO05D005231 5.8e-45 184.5 138 58.7
ECA238G1611 Erigeron canadensis HOM05D004462 ORTHO05D005231 1.3e-44 183.3 142 57.7
HanXRQChr14g0443511 Helianthus annuus HOM05D004462 ORTHO05D005231 1.7e-44 183.0 139 59.7
DCAR_003394 Daucus carota HOM05D004462 ORTHO05D005231 4.9e-44 181.4 146 57.5
HanXRQChr12g0365631 Helianthus annuus HOM05D004462 ORTHO05D005231 8.4e-44 180.6 142 58.5
CDE06G2132 Ceratophyllum demersum HOM05D004462 ORTHO05D005231 1.4e-43 179.9 141 62.4
vmacro18489 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 3.2e-43 178.7 111 74.8
Rhsim08G0023100 Rhododendron simsii HOM05D004462 ORTHO05D005231 9.3e-43 177.2 117 70.1
vmacro20446 Vaccinium macrocarpon HOM05D004462 ORTHO05D005231 1.6e-42 176.4 143 60.8
arahy.Tifrunner.gnm1.ann1.U75ZTX Arachis hypogaea HOM05D004462 ORTHO05D005231 2.1e-42 176.0 115 72.2
Aqoxy3G04064 Aquilegia oxysepala HOM05D004462 ORTHO05D005231 1.5e-40 169.9 141 56.0
arahy.Tifrunner.gnm1.ann1.UF2MTZ Arachis hypogaea HOM05D004462 ORTHO05D005231 9.7e-40 167.2 139 61.2
Mapoly0075s0081 Marchantia polymorpha HOM05D004462 ORTHO05D005231 3.7e-39 165.2 136 55.9
FAN26G3346 Fragaria x ananassa HOM05D004462 ORTHO05D005231 6.5e-36 154.5 99 65.7
Pp3c13_5830 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.7e-32 141.4 125 52.0
Pp3c13_5831 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.7e-32 141.4 125 52.0
Pp3c12_2960 Physcomitrium patens HOM05D004462 ORTHO05D005231 6.3e-31 137.9 131 48.1
unitig_748.g8625 Utricularia gibba HOM05D001875 ORTHO05D002019 3.8e-28 128.6 85 67.1
CBR_g21744 Chara braunii HOM05D004462 ORTHO05D005231 1.2e-26 123.6 131 45.0
DCAR_007795 Daucus carota HOM05D004462 ORTHO05D005231 1.6e-26 123.2 99 59.6
DCAR_010504 Daucus carota HOM05D004462 ORTHO05D005231 1.6e-26 123.2 99 58.6
Pp3c13_5870 Physcomitrium patens HOM05D004462 ORTHO05D005231 3.0e-25 119.0 127 44.9
CBR_g266 Chara braunii HOM05D004462 ORTHO05D005231 3.9e-25 118.6 138 40.6
AagrBONN_evm.TU.Sc2ySwM_117.1823 Anthoceros agrestis HOM05D004462 ORTHO05D005231 4.4e-24 115.2 138 40.6
DCAR_028827 Daucus carota HOM05D000012 ORTHO05D000567 1.3e-23 113.6 93 58.1
HPP92_009441 Vanilla planifolia HOM05D004462 ORTHO05D005231 1.7e-23 113.2 144 40.3
Mapoly0056s0049 Marchantia polymorpha HOM05D004462 ORTHO05D005231 2.8e-23 112.5 133 42.1
Cre12.g559800 Chlamydomonas reinhardtii HOM05D004462 ORTHO05D005231 1.1e-22 110.5 141 43.3
CBR_g38628 Chara braunii HOM05D004462 ORTHO05D005231 1.2e-21 107.1 134 38.1
SMO337G0081 Selaginella moellendorffii HOM05D004462 ORTHO05D005231 2.6e-21 105.9 139 39.6
Pp3c6_29390 Physcomitrium patens HOM05D004462 ORTHO05D005231 5.5e-19 98.2 135 36.3
BcaC02g09555 Brassica carinata HOM05D000188 ORTHO05D005231 2.6e-16 89.4 55 72.7
DCAR_006132 Daucus carota HOM05D004462 ORTHO05D005231 9.7e-16 87.4 59 66.1
DCAR_011767 Daucus carota HOM05D000532 ORTHO05D002414 9.7e-16 87.4 61 63.9
MCO14G359 Micromonas commoda HOM05D004462 ORTHO05D005231 9.7e-16 87.4 112 41.1
C04p44040 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-15 87.0 55 70.9
C04p44070 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-15 87.0 55 70.9
C04p44110 Brassica napus HOM05D004462 ORTHO05D005231 1.3e-15 87.0 55 70.9
Lsat_1_v5_gn_5_96540 Lactuca sativa HOM05D004462 ORTHO05D005231 1.1e-14 84.0 99 47.5
GSVIVG01020320001 Vitis vinifera HOM05D004462 ORTHO05D005231 2.4e-14 82.8 54 68.5
AagrBONN_evm.TU.Sc2ySwM_228.473 Anthoceros agrestis HOM05D004462 ORTHO05D005231 7.7e-13 77.8 90 41.1
MCO08G122 Micromonas commoda HOM05D004462 ORTHO05D005231 1.1e-11 73.9 145 31.7
TAR371G1025 Trochodendron aralioides HOM05D004462 ORTHO05D005231 4.7e-10 68.6 49 59.2
PRCOL_00004990 Prasinoderma coloniale HOM05D004462 ORTHO05D005231 2.6e-08 62.8 101 36.6
Sabra12G0026800 Salix brachista HOM05D001043 ORTHO05D349056 2.2e-07 59.7 32 84.4
Rhsim08G0023200 Rhododendron simsii HOM05D000230 ORTHO05D339814 8.2e-07 57.8 39 69.2


User provided reference genes

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