Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0556 Cannabis sativa HOM05D008023 ORTHO05D010897 6.4e-266 920.2 479 100.0
Ciclev10008068m.g Citrus clementina HOM05D008023 ORTHO05D002944 2.0e-33 147.9 520 31.0
Atru.chr2.2242 Acer truncatum HOM05D008023 ORTHO05D002944 5.8e-33 146.4 518 31.3
Lj1A833T49 Lonicera japonica HOM05D008023 ORTHO05D002944 1.9e-31 141.4 502 31.1
Cfa019590 Carpinus fangiana HOM05D008023 ORTHO05D002944 2.1e-30 137.9 526 32.7
Potri.001G376800 Populus trichocarpa HOM05D008023 ORTHO05D002944 7.8e-30 136.0 516 30.8
Duzib170G0431 Durio zibethinus HOM05D008023 ORTHO05D002944 1.9e-28 131.3 631 28.7
Prupe.4G170200 Prunus persica HOM05D008023 ORTHO05D002944 5.6e-28 129.8 106 67.0
QL08p026875 Quercus lobata HOM05D008023 ORTHO05D002944 2.8e-27 127.5 530 30.6
CiPaw.12G114700 Carya illinoinensis HOM05D008023 ORTHO05D002944 3.6e-27 127.1 511 29.4
Lj3g0002978 Lotus japonicus HOM05D008023 ORTHO05D002944 1.4e-26 125.2 508 28.5
Actinidia18792 Actinidia chinensis HOM05D008023 ORTHO05D002944 4.0e-26 123.6 526 27.0
Sabra16G0248200 Salix brachista HOM05D008023 ORTHO05D002944 2.0e-25 121.3 533 28.9
Glyma.06G231200 Glycine max HOM05D008023 ORTHO05D002944 2.6e-25 120.9 501 30.9
Manes.03G103000 Manihot esculenta HOM05D008023 ORTHO05D002944 3.4e-25 120.6 553 28.2
Duzib213G0674 Durio zibethinus HOM05D008023 ORTHO05D002944 6.4e-24 116.3 688 26.5
RcHm_v2.0_Chr5g0031461 Rosa chinensis HOM05D008023 ORTHO05D002944 6.4e-24 116.3 271 36.9
TPR.G12029 Trifolium pratense HOM05D008023 ORTHO05D002944 8.4e-24 115.9 500 28.0
FvH4_3g18640 Fragaria vesca HOM05D008023 ORTHO05D002944 1.9e-23 114.8 186 43.5
FAN11G0626 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.9e-23 114.8 186 43.5
Lalb_Chr19g0133891 Lupinus albus HOM05D008023 ORTHO05D002944 3.2e-23 114.0 541 26.4
FAN21G3564 Fragaria x ananassa HOM05D008023 ORTHO05D002944 5.4e-23 113.2 105 58.1
Gohir.D11G306100 Gossypium hirsutum HOM05D008023 ORTHO05D002944 5.4e-23 113.2 632 26.6
Psat4g175400 Pisum sativum HOM05D008023 ORTHO05D002944 7.1e-23 112.8 506 28.1
FAN16G2995 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.2e-22 112.1 105 57.1
TWI39G0037 Tripterygium wilfordii HOM05D008023 ORTHO05D002944 2.1e-22 111.3 619 26.8
FAN25G1709 Fragaria x ananassa HOM05D008023 ORTHO05D002944 1.3e-21 108.6 269 36.4
Manes.15G092100 Manihot esculenta HOM05D008023 ORTHO05D002944 1.7e-21 108.2 537 25.9
Thecc.07G105200 Theobroma cacao HOM05D008023 ORTHO05D002944 2.3e-21 107.8 684 25.0
TAR629G2655 Trochodendron aralioides HOM05D004563 ORTHO05D002944 4.3e-20 103.6 490 30.4
ClCG11G017550 Citrullus lanatus HOM05D008023 ORTHO05D002944 1.6e-19 101.7 105 53.3
FvH4_3g25880 Fragaria vesca HOM05D008023 ORTHO05D010897 6.2e-19 99.8 93 57.0
Ca_23071_v3 Cicer arietinum L. HOM05D008023 ORTHO05D002944 8.1e-19 99.4 495 27.7
Gohir.A11G287000 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.8e-18 98.2 624 26.1
MD11G1259700 Malus domestica HOM05D008023 ORTHO05D002944 2.4e-18 97.8 121 52.1
Medtr8g463800 Medicago truncatula HOM05D008023 ORTHO05D002944 2.4e-18 97.8 511 28.0
Actinidia35220 Actinidia chinensis HOM05D008023 ORTHO05D002944 9.0e-18 95.9 527 25.8
Dinv14970 Davidia involucrata HOM05D008023 ORTHO05D002944 1.2e-17 95.5 359 30.6
MELO3C025631.2 Cucumis melo HOM05D008023 ORTHO05D002944 1.5e-17 95.1 112 49.1
Phvul.011G159200 Phaseolus vulgaris HOM05D008023 ORTHO05D002944 1.3e-16 92.0 645 25.1
Cc05_g11360 Coffea canephora HOM05D008023 ORTHO05D002944 2.2e-16 91.3 332 29.8
VMungo1127G0722 Vigna mungo HOM05D008023 ORTHO05D002944 2.2e-16 91.3 246 35.0
CsaV3_4G033230 Cucumis sativus L. HOM05D008023 ORTHO05D010897 3.8e-16 90.5 116 50.0
MD03G1240400 Malus domestica HOM05D008023 ORTHO05D002944 1.9e-15 88.2 444 29.7
vmacro09501 Vaccinium macrocarpon HOM05D008023 ORTHO05D002944 2.4e-15 87.8 531 26.9
Gorai.007G325900 Gossypium raimondii HOM05D008023 ORTHO05D002944 4.2e-15 87.0 623 25.2
GSVIVG01014227001 Vitis vinifera HOM05D008023 ORTHO05D002944 4.2e-15 87.0 106 50.0
CSS0035750 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.2e-14 85.5 595 24.5
Haze_09349 Corylus avellana HOM05D008023 ORTHO05D002944 2.7e-14 84.3 453 27.4
Cpa.g.sc131.62 Carica papaya HOM05D008023 ORTHO05D002944 3.5e-14 84.0 490 25.9
Cc01_g02410 Coffea canephora HOM05D008023 ORTHO05D002944 1.8e-13 81.6 209 35.4
Gorai.009G372300 Gossypium raimondii HOM05D008023 ORTHO05D002944 6.7e-13 79.7 609 25.3
CAN.G162.20 Capsicum annuum HOM05D018586 ORTHO05D002944 5.6e-12 76.6 622 25.7
Rhsim04G0024700 Rhododendron simsii HOM05D008023 ORTHO05D002944 5.6e-12 76.6 509 24.4
Aqoxy4G00427 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 7.4e-12 76.3 512 27.9
Lj8C151T6 Lonicera japonica HOM05D008023 ORTHO05D010897 1.3e-11 75.5 149 38.9
Gohir.A04G038800 Gossypium hirsutum HOM05D008023 ORTHO05D002944 1.6e-11 75.1 320 28.1
CiPaw.04G131700 Carya illinoinensis HOM05D004563 ORTHO05D002944 4.8e-11 73.6 503 24.5
Aqoxy1G03185 Aquilegia oxysepala HOM05D004563 ORTHO05D002944 6.2e-11 73.2 501 23.4
Lsat_1_v5_gn_9_99560 Lactuca sativa HOM05D029722 ORTHO05D002944 6.2e-11 73.2 232 28.9
Gohir.D05G344300 Gossypium hirsutum HOM05D008023 ORTHO05D002944 8.1e-11 72.8 316 29.4
TAR626G0818 Trochodendron aralioides HOM05D008023 ORTHO05D002944 1.1e-10 72.4 305 29.5
Peaxi162Scf00069g02022 Petunia axillaris HOM05D018586 ORTHO05D002944 1.4e-10 72.0 167 34.7
Manes.13G138000 Manihot esculenta HOM05D004563 ORTHO05D002944 2.4e-10 71.2 502 25.5
Haze_13348 Corylus avellana HOM05D004563 ORTHO05D002944 4.0e-10 70.5 482 26.8
Dinv14971 Davidia involucrata HOM05D000845 ORTHO05D003813 4.0e-10 70.5 79 50.6
SGA_v2.0_scaffold73G24197 Striga asiatica HOM05D008023 ORTHO05D002944 4.0e-10 70.5 502 25.3
Thecc.01G148500 Theobroma cacao HOM05D004563 ORTHO05D002944 6.9e-10 69.7 493 25.8
MSTRG.14955 Avicennia marina HOM05D008023 ORTHO05D002944 9.0e-10 69.3 572 25.3
CiPaw.11G162800 Carya illinoinensis HOM05D008023 ORTHO05D002944 1.2e-09 68.9 492 25.0
QL08p041398 Quercus lobata HOM05D004563 ORTHO05D002944 1.2e-09 68.9 498 25.5
CARHR066100 Cardamine hirsuta HOM05D009038 ORTHO05D010897 1.5e-09 68.6 186 31.7
Nitab4.5_0000246g0140 Nicotiana tabacum HOM05D018586 ORTHO05D002944 1.5e-09 68.6 268 30.2
Sp5g28090 Schrenkiella parvula HOM05D009038 ORTHO05D010897 1.5e-09 68.6 107 41.1
THA.LOC104812203 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 2.0e-09 68.2 134 36.6
SalBow8G1085 Salvia bowleyana HOM05D008023 ORTHO05D002944 2.6e-09 67.8 539 26.2
Eucgr.L01514 Eucalyptus grandis HOM05D008023 ORTHO05D010897 4.5e-09 67.0 100 42.0
Thhalv10018751m.g Eutrema salsugineum HOM05D009038 ORTHO05D010897 5.8e-09 66.6 174 35.6
GSVIVG01020684001 Vitis vinifera HOM05D004563 ORTHO05D002944 5.8e-09 66.6 500 26.8
Aa31LG4G3400 Aethionema arabicum HOM05D009038 ORTHO05D010897 7.6e-09 66.2 84 44.0
AT1G17780 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 7.6e-09 66.2 162 38.3
Eucgr.F01214 Eucalyptus grandis HOM05D008023 ORTHO05D010897 7.6e-09 66.2 103 41.7
MD17G1232800 Malus domestica HOM05D004563 ORTHO05D002944 7.6e-09 66.2 495 22.8
Nitab4.5_0006539g0020 Nicotiana tabacum HOM05D018586 ORTHO05D002944 7.6e-09 66.2 262 30.9
PGSC0003DMG400012394 Solanum tuberosum HOM05D018586 ORTHO05D002944 7.6e-09 66.2 647 23.5
TAR624G1329 Trochodendron aralioides HOM05D004563 ORTHO05D002944 1.3e-08 65.5 523 26.4
AT1G73130 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 1.7e-08 65.1 157 33.1
THA.LOC104823260 Tarenaya hassleriana HOM05D009038 ORTHO05D010897 1.7e-08 65.1 199 32.2
Oeu051114.4 Olea europaea HOM05D008023 ORTHO05D002944 2.2e-08 64.7 205 30.7
CSS0006802 Camellia sinensis var. sinensis HOM05D004563 ORTHO05D002944 2.9e-08 64.3 499 24.6
AT2G16575 Arabidopsis thaliana HOM05D009038 ORTHO05D010897 3.8e-08 63.9 105 44.8
A08p30740 Brassica napus HOM05D009038 ORTHO05D010897 3.8e-08 63.9 152 34.2
Hma1.2p1_0178F.1_g078980 Hydrangea macrophylla HOM05D004563 ORTHO05D002944 3.8e-08 63.9 117 37.6
Sp1g15860 Schrenkiella parvula HOM05D009038 ORTHO05D010897 3.8e-08 63.9 111 42.3
Solyc07g062640.3 Solanum lycopersicum HOM05D018586 ORTHO05D002944 3.8e-08 63.9 635 22.4
AL1G30140 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 4.9e-08 63.5 148 37.2
BcaC07g38888 Brassica carinata HOM05D009038 ORTHO05D010897 4.9e-08 63.5 110 40.0
C08p18180 Brassica napus HOM05D009038 ORTHO05D010897 4.9e-08 63.5 110 40.0
BolC8t49453H Brassica oleracea HOM05D009038 ORTHO05D010897 4.9e-08 63.5 110 40.0
Sopen07g030870 Solanum pennellii HOM05D018586 ORTHO05D002944 4.9e-08 63.5 123 37.4
AL2G32880 Arabidopsis lyrata HOM05D009038 ORTHO05D010897 8.4e-08 62.8 73 49.3
Carub.0001s1751 Capsella rubella HOM05D009038 ORTHO05D010897 8.4e-08 62.8 108 43.5
CSS0022203 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.1e-07 62.4 85 37.6
CSS0038794 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.4e-07 62.0 107 39.3
CSS0041377 Camellia sinensis var. sinensis HOM05D008023 ORTHO05D002944 1.4e-07 62.0 107 39.3
CANSAT64G2099 Cannabis sativa HOM05D004563 ORTHO05D002944 1.4e-07 62.0 483 24.0
COL.COLO4_33545 Corchorus olitorius HOM05D004563 ORTHO05D002944 1.9e-07 61.6 116 34.5
Prupe.3G122900 Prunus persica HOM05D004563 ORTHO05D002944 1.9e-07 61.6 497 23.5
Dinv40663 Davidia involucrata HOM05D014353 ORTHO05D002944 4.2e-07 60.5 101 38.6
Carub.0002s1990 Capsella rubella HOM05D009038 ORTHO05D010897 5.5e-07 60.1 81 45.7
MELO3C019761.2 Cucumis melo HOM05D004563 ORTHO05D002944 7.1e-07 59.7 111 35.1
CsaV3_6G018840 Cucumis sativus L. HOM05D004563 ORTHO05D002944 7.1e-07 59.7 112 34.8
TAR626G0367 Trochodendron aralioides HOM05D004563 ORTHO05D002944 7.1e-07 59.7 86 40.7
PGR042G0272 Punica granatum HOM05D004563 ORTHO05D002944 9.3e-07 59.3 482 25.7
Actinidia11133 Actinidia chinensis HOM05D004563 ORTHO05D002944 1.2e-06 58.9 497 27.4
BcaB02g10364 Brassica carinata HOM05D004563 ORTHO05D002944 1.2e-06 58.9 44 61.4
CARHR018390 Cardamine hirsuta HOM05D009038 ORTHO05D010897 1.2e-06 58.9 207 30.0
Actinidia10974 Actinidia chinensis HOM05D004563 ORTHO05D002944 1.6e-06 58.5 103 43.7
Carub.0004s1239 Capsella rubella HOM05D004563 ORTHO05D002944 1.6e-06 58.5 50 58.0
Dinv03911 Davidia involucrata HOM05D004563 ORTHO05D002944 1.6e-06 58.5 101 37.6
Lsat_1_v5_gn_8_140081 Lactuca sativa HOM05D004563 ORTHO05D002944 1.6e-06 58.5 87 39.1
AL4G26310 Arabidopsis lyrata HOM05D004563 ORTHO05D002944 2.1e-06 58.2 51 56.9
ClCG02G017950 Citrullus lanatus HOM05D004563 ORTHO05D002944 2.7e-06 57.8 114 35.1
Ciclev10015391m.g Citrus clementina HOM05D004563 ORTHO05D002944 2.7e-06 57.8 486 24.1
Migut.M00743 Erythranthe guttata HOM05D008023 ORTHO05D002944 2.7e-06 57.8 240 25.8
Sp4g13600 Schrenkiella parvula HOM05D004563 ORTHO05D002944 2.7e-06 57.8 44 59.1
BcaC02g11198 Brassica carinata HOM05D004563 ORTHO05D002944 3.5e-06 57.4 44 59.1
C04p19350 Brassica napus HOM05D004563 ORTHO05D002944 3.5e-06 57.4 44 59.1
BolC4t23467H Brassica oleracea HOM05D004563 ORTHO05D002944 3.5e-06 57.4 44 59.1
HanXRQChr17g0557991 Helianthus annuus HOM05D004563 ORTHO05D002944 3.5e-06 57.4 51 51.0
PGSC0003DMG400020429 Solanum tuberosum HOM05D004563 ORTHO05D002944 3.5e-06 57.4 116 34.5
THA.LOC104800859 Tarenaya hassleriana HOM05D004563 ORTHO05D002944 3.5e-06 57.4 47 57.4
BraA05t20385Z Brassica rapa HOM05D004563 ORTHO05D002944 4.6e-06 57.0 44 59.1
DCAR_013145 Daucus carota HOM05D008023 ORTHO05D002944 4.6e-06 57.0 547 21.2
Dinv04617 Davidia involucrata HOM05D000845 ORTHO05D003813 4.6e-06 57.0 80 38.8
Rhsim04G0073900 Rhododendron simsii HOM05D004563 ORTHO05D002944 4.6e-06 57.0 58 46.6
BcaB01g04062 Brassica carinata HOM05D004563 ORTHO05D002944 6.0e-06 56.6 56 48.2
A05p14540 Brassica napus HOM05D004563 ORTHO05D002944 6.0e-06 56.6 44 59.1
TAR627G0246 Trochodendron aralioides HOM05D008023 ORTHO05D002944 6.0e-06 56.6 93 45.2
EL10Ac9g20912 Beta vulgaris HOM05D004563 ORTHO05D002944 7.9e-06 56.2 65 44.6
A02p18460 Brassica napus HOM05D009038 ORTHO05D010897 7.9e-06 56.2 258 26.7
BraA02t06885Z Brassica rapa HOM05D009038 ORTHO05D010897 7.9e-06 56.2 258 26.7
BraA08t35004Z Brassica rapa HOM05D009038 ORTHO05D010897 7.9e-06 56.2 208 27.9
CARHR124710 Cardamine hirsuta HOM05D004563 ORTHO05D002944 7.9e-06 56.2 56 48.2
Duzib147G1211 Durio zibethinus HOM05D004563 ORTHO05D002944 7.9e-06 56.2 114 34.2
Nitab4.5_0003827g0050 Nicotiana tabacum HOM05D004563 ORTHO05D002944 7.9e-06 56.2 177 31.1


User provided reference genes

Program Settings