Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0531 Cannabis sativa HOM05D006067 ORTHO05D007327 1.1e-268 929.5 493 100.0
Thecc.07G117200 Theobroma cacao HOM05D006067 ORTHO05D007327 5.0e-80 302.8 505 39.0
Cpa.g.sc77.10 Carica papaya HOM05D006067 ORTHO05D007327 6.7e-77 292.4 501 38.7
Atru.chr2.2107 Acer truncatum HOM05D006067 ORTHO05D007327 1.2e-73 281.6 600 33.5
Gorai.002G054500 Gossypium raimondii HOM05D006067 ORTHO05D007327 5.5e-71 272.7 593 32.0
Gohir.D01G042720 Gossypium hirsutum HOM05D006067 ORTHO05D007327 2.1e-70 270.8 593 31.9
Prupe.4G164500 Prunus persica HOM05D006067 ORTHO05D007327 3.6e-70 270.0 594 33.7
Gohir.A01G054200 Gossypium hirsutum HOM05D006067 ORTHO05D007327 3.3e-68 263.5 588 31.6
Lalb_Chr03g0031151 Lupinus albus HOM05D006067 ORTHO05D007327 2.0e-65 254.2 560 33.9
vmacro09492 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 2.0e-65 254.2 544 33.5
TWI38G1841 Tripterygium wilfordii HOM05D006067 ORTHO05D007327 5.9e-65 252.7 559 32.7
Potri.011G109600 Populus trichocarpa HOM05D006067 ORTHO05D007327 1.3e-64 251.5 521 32.8
Sabra11G0096900 Salix brachista HOM05D006067 ORTHO05D007327 2.9e-64 250.4 514 32.9
Aqoxy4G00317 Aquilegia oxysepala HOM05D006067 ORTHO05D007327 2.5e-63 247.3 509 36.5
Glyma.13G269800 Glycine max HOM05D006067 ORTHO05D007327 2.1e-62 244.2 384 40.1
Glyma.12G229800 Glycine max HOM05D006067 ORTHO05D007327 3.6e-62 243.4 396 39.6
PGR031G0069 Punica granatum HOM05D006067 ORTHO05D007327 1.8e-61 241.1 536 34.5
ClCG11G017430 Citrullus lanatus HOM05D006067 ORTHO05D007327 2.3e-61 240.7 547 31.3
arahy.Tifrunner.gnm1.ann1.V1MG1J Arachis hypogaea HOM05D006067 ORTHO05D007327 6.8e-61 239.2 594 32.8
arahy.Tifrunner.gnm1.ann1.9BW5EX Arachis hypogaea HOM05D006067 ORTHO05D007327 1.2e-60 238.4 613 31.5
CsaV3_4G033090 Cucumis sativus L. HOM05D006067 ORTHO05D007327 1.7e-59 234.6 509 31.4
TPR.G13942 Trifolium pratense HOM05D006067 ORTHO05D007327 1.7e-59 234.6 398 38.9
Medtr2g076330 Medicago truncatula HOM05D006067 ORTHO05D007327 1.1e-58 231.9 424 36.6
Lj3g0019341 Lotus japonicus HOM05D006067 ORTHO05D007327 4.1e-58 229.9 372 39.5
Sed0004545 Sechium edule HOM05D006067 ORTHO05D007327 5.3e-58 229.6 540 30.9
MELO3C025643.2 Cucumis melo HOM05D006067 ORTHO05D007327 1.7e-56 224.6 541 32.2
VMungo1080G1893 Vigna mungo HOM05D006067 ORTHO05D007327 5.0e-56 223.0 389 38.0
Migut.M00726 Erythranthe guttata HOM05D006067 ORTHO05D007327 4.2e-55 219.9 525 34.5
Phvul.005G065400 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.2e-55 219.9 440 34.8
Eucgr.F03271 Eucalyptus grandis HOM05D006067 ORTHO05D007327 2.1e-54 217.6 345 40.3
Glyma.08G245900 Glycine max HOM05D006067 ORTHO05D007327 2.8e-51 207.2 359 38.4
Carub.0002s2563 Capsella rubella HOM05D006067 ORTHO05D007327 1.0e-48 198.7 501 30.7
AT1G78810 Arabidopsis thaliana HOM05D006067 ORTHO05D007327 7.2e-47 192.6 503 29.8
Aa31LG4G2200 Aethionema arabicum HOM05D006067 ORTHO05D007327 2.1e-46 191.0 488 31.4
MD11G1264000 Malus domestica HOM05D006067 ORTHO05D007327 2.3e-45 187.6 748 27.9
AL2G39210 Arabidopsis lyrata HOM05D006067 ORTHO05D007327 6.8e-45 186.0 502 29.1
Sp5g33840 Schrenkiella parvula HOM05D006067 ORTHO05D007327 2.0e-44 184.5 503 30.8
Thhalv10018481m.g Eutrema salsugineum HOM05D006067 ORTHO05D007327 2.4e-42 177.6 491 29.7
CARHR072360 Cardamine hirsuta HOM05D006067 ORTHO05D007327 3.2e-42 177.2 488 30.7
COL.COLO4_17541 Corchorus olitorius HOM05D006067 ORTHO05D007327 1.6e-41 174.9 429 35.0
BolC2t09603H Brassica oleracea HOM05D006067 ORTHO05D007327 2.0e-41 174.5 482 29.7
C02p35900 Brassica napus HOM05D006067 ORTHO05D007327 4.5e-41 173.3 482 29.7
QL12p009545 Quercus lobata HOM05D006067 ORTHO05D007327 7.8e-41 172.6 604 26.7
Dinv14994 Davidia involucrata HOM05D006614 ORTHO05D008217 1.1e-39 168.7 234 45.7
A02p22360 Brassica napus HOM05D006067 ORTHO05D007327 3.3e-39 167.2 484 29.1
BraA02t07240Z Brassica rapa HOM05D006067 ORTHO05D007327 7.3e-39 166.0 483 29.0
Nn1g04444 Nelumbo nucifera HOM05D006067 ORTHO05D007327 9.5e-39 165.6 219 43.4
Ciclev10024254m.g Citrus clementina HOM05D006067 ORTHO05D007327 1.0e-37 162.2 197 48.2
Lj3g0000770 Lotus japonicus HOM05D006067 ORTHO05D007327 4.0e-37 160.2 281 38.8
BcaB05g25155 Brassica carinata HOM05D006067 ORTHO05D007327 6.8e-37 159.5 480 29.0
Sabra16G0255800 Salix brachista HOM05D006067 ORTHO05D007327 8.9e-37 159.1 511 27.2
MBI07_g09563_MAGBIO Magnolia biondii HOM05D006067 ORTHO05D007327 1.7e-35 154.8 204 48.0
TAR624G0749 Trochodendron aralioides HOM05D006067 ORTHO05D007327 2.2e-35 154.5 282 36.9
vmacro11942 Vaccinium macrocarpon HOM05D006067 ORTHO05D007327 8.3e-35 152.5 246 41.1
Duzib268G0832 Durio zibethinus HOM05D006067 ORTHO05D007327 1.4e-34 151.8 218 39.4
RcHm_v2.0_Chr5g0030881 Rosa chinensis HOM05D006067 ORTHO05D007327 1.9e-34 151.4 281 39.1
CSS0028289 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 1.2e-33 148.7 229 39.3
Ca_03979_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 3.5e-33 147.1 200 46.0
FAN11G2230 Fragaria x ananassa HOM05D006067 ORTHO05D007327 3.5e-33 147.1 257 38.1
Lalb_Chr24g0400331 Lupinus albus HOM05D006067 ORTHO05D007327 4.6e-33 146.7 199 46.2
Glyma.06G229200 Glycine max HOM05D006067 ORTHO05D007327 1.0e-32 145.6 287 33.1
GSVIVG01014195001 Vitis vinifera HOM05D006067 ORTHO05D007327 1.7e-32 144.8 262 36.6
CSS0029215 Camellia sinensis var. sinensis HOM05D006067 ORTHO05D007327 3.9e-32 143.7 247 37.2
Psat4g136000 Pisum sativum HOM05D006067 ORTHO05D007327 3.9e-32 143.7 253 38.7
Haze_00805 Corylus avellana HOM05D006067 ORTHO05D007327 5.0e-32 143.3 213 45.5
FvH4_3g18260 Fragaria vesca HOM05D006067 ORTHO05D007327 8.6e-32 142.5 258 38.0
Phvul.011G162500 Phaseolus vulgaris HOM05D006067 ORTHO05D007327 4.3e-31 140.2 281 34.2
RcHm_v2.0_Chr1g0314351 Rosa chinensis HOM05D006067 ORTHO05D007327 4.3e-31 140.2 246 39.0
Manes.15G095100 Manihot esculenta HOM05D006067 ORTHO05D007327 1.2e-30 138.7 296 33.8
CDE02G3386 Ceratophyllum demersum HOM05D006067 ORTHO05D007327 6.2e-30 136.3 211 42.7
Rhsim06G0208300 Rhododendron simsii HOM05D006067 ORTHO05D007327 6.2e-30 136.3 251 35.5
Cfa015710 Carpinus fangiana HOM05D006067 ORTHO05D007327 1.1e-29 135.6 230 41.7
Lalb_Chr14g0365891 Lupinus albus HOM05D006067 ORTHO05D007327 2.3e-29 134.4 199 43.7
HanXRQChr13g0389481 Helianthus annuus HOM05D006067 ORTHO05D007327 4.0e-29 133.7 284 31.7
SGA_v2.0_scaffold70G23375 Striga asiatica HOM05D006067 ORTHO05D007327 4.0e-29 133.7 243 36.2
Sopen10g003150 Solanum pennellii HOM05D006067 ORTHO05D007327 8.9e-29 132.5 246 37.0
EL10Ac4g08347 Beta vulgaris HOM05D006067 ORTHO05D007327 1.2e-28 132.1 228 36.4
RcHm_v2.0_Chr7g0196621 Rosa chinensis HOM05D006067 ORTHO05D007327 1.2e-28 132.1 251 37.8
Cc05_g11060 Coffea canephora HOM05D006067 ORTHO05D007327 1.5e-28 131.7 259 37.8
Ca_26225_v3 Cicer arietinum L. HOM05D006067 ORTHO05D007327 2.0e-28 131.3 286 32.5
arahy.Tifrunner.gnm1.ann1.VQ55QZ Arachis hypogaea HOM05D006067 ORTHO05D007327 4.4e-28 130.2 195 41.5
BcaC03g15839 Brassica carinata HOM05D006067 ORTHO05D007327 4.4e-28 130.2 423 28.4
arahy.Tifrunner.gnm1.ann1.2G52JQ Arachis hypogaea HOM05D006067 ORTHO05D007327 5.8e-28 129.8 195 44.1
SalBow8G2822 Salvia bowleyana HOM05D006067 ORTHO05D007327 9.8e-28 129.0 242 36.0
Hund25365 Selenicereus undatus HOM05D006067 ORTHO05D007327 2.9e-27 127.5 189 43.9
VMungo1127G0097 Vigna mungo HOM05D006067 ORTHO05D007327 3.7e-27 127.1 279 33.7
Nitab4.5_0006953g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 4.9e-27 126.7 212 39.2
Peaxi162Scf00111g01468 Petunia axillaris HOM05D001990 ORTHO05D002033 1.1e-26 125.6 214 36.0
MSTRG.6678 Avicennia marina HOM05D006067 ORTHO05D007327 1.9e-26 124.8 292 31.2
Peaxi162Scf00692g00416 Petunia axillaris HOM05D006067 ORTHO05D007327 3.2e-26 124.0 230 33.0
CDE09G1032 Ceratophyllum demersum HOM05D001990 ORTHO05D002033 5.4e-26 123.2 213 40.4
HPP92_012804 Vanilla planifolia HOM05D006067 ORTHO05D007327 9.2e-26 122.5 268 33.6
Rhsim04G0026500 Rhododendron simsii HOM05D006067 ORTHO05D007327 1.2e-25 122.1 209 37.8
Solyc10g007340.3 Solanum lycopersicum HOM05D006067 ORTHO05D007327 1.6e-25 121.7 214 40.2
PGSC0003DMG400007100 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.7e-25 120.9 214 38.3
Sopen10g003170 Solanum pennellii HOM05D006067 ORTHO05D007327 7.8e-25 119.4 201 45.3
Lsat_1_v5_gn_9_99841 Lactuca sativa HOM05D006067 ORTHO05D007327 1.0e-24 119.0 327 32.4
Solyc07g062410.4 Solanum lycopersicum HOM05D006067 ORTHO05D007327 2.3e-24 117.9 230 37.0
Sopen07g030660 Solanum pennellii HOM05D006067 ORTHO05D007327 3.9e-24 117.1 216 37.5
AUR62042783 Chenopodium quinoa HOM05D006067 ORTHO05D007327 8.6e-24 115.9 88 56.8
Oeu031029.1 Olea europaea HOM05D006067 ORTHO05D007327 2.5e-23 114.4 286 31.1
Medtr0022s0280 Medicago truncatula HOM05D006067 ORTHO05D007327 3.3e-23 114.0 274 32.8
RcHm_v2.0_Chr1g0357411 Rosa chinensis HOM05D006067 ORTHO05D007327 5.6e-23 113.2 97 52.6
TPR.G11309 Trifolium pratense HOM05D006067 ORTHO05D007327 1.2e-22 112.1 144 41.0
Sc16g0007610 Simmondsia chinensis HOM05D006067 ORTHO05D007327 1.6e-22 111.7 146 43.2
ECA240G2089 Erigeron canadensis HOM05D006067 ORTHO05D007327 2.8e-22 110.9 115 48.7
Hma1.2p1_0290F.1_g114870 Hydrangea macrophylla HOM05D006067 ORTHO05D007327 1.4e-21 108.6 221 33.9
AUR62007119 Chenopodium quinoa HOM05D006067 ORTHO05D007327 1.2e-20 105.5 93 52.7
Eucgr.F03267 Eucalyptus grandis HOM05D006067 ORTHO05D007327 3.4e-20 104.0 306 29.4
THA.LOC104812320 Tarenaya hassleriana HOM05D006067 ORTHO05D007327 9.9e-20 102.4 307 28.0
ATR0012G052 Amborella trichopoda HOM05D006067 ORTHO05D007327 1.1e-18 99.0 229 34.9
Nitab4.5_0003565g0020 Nicotiana tabacum HOM05D001990 ORTHO05D002033 6.6e-16 89.7 167 40.7
SEGI_27593 Sequoiadendron giganteum HOM05D006067 ORTHO05D007327 1.5e-15 88.6 136 36.0
SalBow1G5118 Salvia bowleyana HOM05D006067 ORTHO05D007327 2.5e-15 87.8 85 50.6
Os06g0153600 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 5.6e-15 86.7 93 44.1
Mapoly0061s0049 Marchantia polymorpha HOM05D006067 ORTHO05D007327 1.2e-14 85.5 84 45.2
AUR62019577 Chenopodium quinoa HOM05D006067 ORTHO05D007327 2.8e-14 84.3 59 61.0
Nitab4.5_0000383g0160 Nicotiana tabacum HOM05D006067 ORTHO05D007327 4.7e-14 83.6 62 61.3
Zm00001eb152520 Zea mays HOM05D006067 ORTHO05D007327 4.7e-14 83.6 140 35.0
PGSC0003DMG400021262 Solanum tuberosum HOM05D006067 ORTHO05D007327 2.4e-13 81.3 78 56.4
Os01g0759000 Oryza sativa ssp. japonica HOM05D006067 ORTHO05D007327 5.2e-13 80.1 191 30.9
FAN16G1756 Fragaria x ananassa HOM05D006067 ORTHO05D007327 7.6e-12 76.3 185 33.5
Eucgr.F03268 Eucalyptus grandis HOM05D006067 ORTHO05D007327 1.3e-11 75.5 55 52.7
Mapoly1798s0001 Marchantia polymorpha HOM05D006067 ORTHO05D007327 4.6e-09 67.0 62 45.2
SHI37128 Sapria himalayana HOM05D006067 ORTHO05D007327 6.6e-08 63.2 219 27.9
Pp3c23_21590 Physcomitrium patens HOM05D006067 ORTHO05D007327 1.5e-07 62.0 142 30.3
Thecc.07G116600 Theobroma cacao HOM05D006067 ORTHO05D007327 4.3e-07 60.5 124 36.3


User provided reference genes

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