Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0529 Cannabis sativa HOM05D004836 ORTHO05D005150 0.0e+00 2446.4 1319 100.0
CANSAT11G1576 Cannabis sativa HOM05D004836 ORTHO05D005150 4.6e-290 1001.9 1991 39.8
CiPaw.11G204300 Carya illinoinensis HOM05D004836 ORTHO05D005150 6.9e-153 546.2 1869 31.4
Prupe.5G032900 Prunus persica HOM05D004836 ORTHO05D005150 3.5e-149 533.9 1716 32.0
Prupe.7G022200 Prunus persica HOM05D004836 ORTHO05D005150 2.2e-146 524.6 1712 31.8
Haze_09829 Corylus avellana HOM05D004836 ORTHO05D005150 1.0e-143 515.8 1856 31.7
RcHm_v2.0_Chr1g0333641 Rosa chinensis HOM05D004836 ORTHO05D005150 2.8e-138 497.7 1747 31.3
Dinv40862 Davidia involucrata HOM05D004836 ORTHO05D005150 5.3e-137 493.4 1439 32.5
QL08p004015 Quercus lobata HOM05D004836 ORTHO05D005150 1.5e-136 491.9 1827 32.1
MD03G1024600 Malus domestica HOM05D004836 ORTHO05D005150 5.0e-135 486.9 1841 30.6
FvH4_7g06090 Fragaria vesca HOM05D004836 ORTHO05D005150 1.4e-121 442.2 865 40.8
Atru.chr2.3693 Acer truncatum HOM05D004836 ORTHO05D005150 5.0e-119 433.7 1562 30.0
FAN10G2990 Fragaria x ananassa HOM05D004836 ORTHO05D005150 1.1e-118 432.6 1171 33.5
FAN06G1091 Fragaria x ananassa HOM05D004836 ORTHO05D005150 5.2e-116 423.7 1165 34.2
Manes.03G141700 Manihot esculenta HOM05D004836 ORTHO05D005150 6.8e-116 423.3 1543 31.2
FAN01G1635 Fragaria x ananassa HOM05D004836 ORTHO05D005150 2.0e-115 421.8 1166 34.4
MD11G1029700 Malus domestica HOM05D004836 ORTHO05D005150 2.0e-115 421.8 895 39.6
FAN03G2987 Fragaria x ananassa HOM05D004836 ORTHO05D005150 7.7e-112 409.8 1150 34.4
TAR626G1210 Trochodendron aralioides HOM05D004836 ORTHO05D005150 1.2e-107 396.0 1714 29.0
TWI38G0981 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 4.4e-107 394.0 1657 29.8
Actinidia37154 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.5e-102 378.3 1541 29.8
Dinv10337 Davidia involucrata HOM05D004836 ORTHO05D005150 2.5e-102 378.3 1664 29.2
Potri.001G368200 Populus trichocarpa HOM05D004836 ORTHO05D005150 3.3e-102 377.9 1616 29.6
Gohir.A01G091700 Gossypium hirsutum HOM05D004836 ORTHO05D005150 9.8e-99 366.3 1067 34.6
Thecc.07G013200 Theobroma cacao HOM05D004836 ORTHO05D005150 9.8e-99 366.3 745 40.0
CSS0029600 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 2.2e-98 365.2 1470 29.7
Eucgr.F02046 Eucalyptus grandis HOM05D004836 ORTHO05D005150 5.9e-96 357.1 1560 29.7
Duzib213G0869 Durio zibethinus HOM05D004836 ORTHO05D005150 1.0e-95 356.3 799 38.7
Gorai.002G100500 Gossypium raimondii HOM05D004836 ORTHO05D005150 5.0e-95 354.0 1057 34.2
Gohir.D01G061900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 8.6e-95 353.2 1064 34.6
Manes.15G059500 Manihot esculenta HOM05D004836 ORTHO05D005150 9.5e-94 349.7 1477 29.5
Gohir.A13G132500 Gossypium hirsutum HOM05D004836 ORTHO05D005150 4.7e-93 347.4 1785 28.4
GSVIVG01014692001 Vitis vinifera HOM05D004836 ORTHO05D005150 3.1e-92 344.7 917 36.8
PGR083G2228 Punica granatum HOM05D004836 ORTHO05D005150 5.2e-92 344.0 1658 27.6
Actinidia05002 Actinidia chinensis HOM05D004836 ORTHO05D005150 2.6e-91 341.7 775 37.3
Ciclev10007227m.g Citrus clementina HOM05D004836 ORTHO05D005150 1.3e-90 339.3 812 38.7
Gohir.D13G135900 Gossypium hirsutum HOM05D004836 ORTHO05D005150 3.9e-87 327.8 792 39.8
COL.COLO4_09837 Corchorus olitorius HOM05D004836 ORTHO05D005150 3.3e-86 324.7 1630 27.2
TAR624G0729 Trochodendron aralioides HOM05D004836 ORTHO05D005150 3.6e-85 321.2 1706 27.0
Sabra16G0241300 Salix brachista HOM05D004836 ORTHO05D005150 6.2e-85 320.5 1154 33.4
Rhsim06G0230000 Rhododendron simsii HOM05D004836 ORTHO05D005150 1.4e-84 319.3 718 36.2
Gorai.013G152400 Gossypium raimondii HOM05D004836 ORTHO05D005150 3.4e-83 314.7 1102 34.0
Oeu014362.2 Olea europaea HOM05D004836 ORTHO05D005150 1.7e-79 302.4 613 38.0
Sed0002835 Sechium edule HOM05D004836 ORTHO05D005150 3.9e-79 301.2 615 38.5
Sed0003689 Sechium edule HOM05D004836 ORTHO05D005150 8.9e-76 290.0 634 39.9
CsaV3_7G011380 Cucumis sativus L. HOM05D004836 ORTHO05D005150 5.4e-73 280.8 1027 29.0
MELO3C024947.2 Cucumis melo HOM05D004836 ORTHO05D005150 1.0e-71 276.6 679 37.4
MD00G1168400 Malus domestica HOM05D004836 ORTHO05D005150 3.0e-71 275.0 501 42.9
ClCG09G021380 Citrullus lanatus HOM05D004836 ORTHO05D005150 1.4e-68 266.2 1176 30.0
CSS0003147 Camellia sinensis var. sinensis HOM05D004836 ORTHO05D005150 5.2e-68 264.2 344 49.1
Lalb_Chr06g0166281 Lupinus albus HOM05D004836 ORTHO05D005150 8.9e-68 263.5 1706 25.6
Cc05_g14960 Coffea canephora HOM05D004836 ORTHO05D005150 2.6e-67 261.9 1660 25.5
TWI39G0854 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.4e-67 261.5 465 44.5
Sc16g0008100 Simmondsia chinensis HOM05D004836 ORTHO05D005150 9.9e-67 260.0 726 33.7
Ca_25650_v3 Cicer arietinum L. HOM05D004836 ORTHO05D005150 1.7e-66 259.2 1630 26.7
Migut.M01650 Erythranthe guttata HOM05D004836 ORTHO05D005150 8.4e-66 256.9 1666 25.3
Cpa.g.sc12.114 Carica papaya HOM05D004836 ORTHO05D005150 9.3e-65 253.4 533 37.1
Medtr1g111660 Medicago truncatula HOM05D004836 ORTHO05D005150 8.7e-63 246.9 1669 25.7
Glyma.10G277400 Glycine max HOM05D004836 ORTHO05D005150 2.5e-62 245.4 624 34.5
PGSC0003DMG400022276 Solanum tuberosum HOM05D004836 ORTHO05D005150 9.6e-62 243.4 770 31.8
Nitab4.5_0007415g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.3e-61 243.0 1188 27.4
Solyc07g065600.3 Solanum lycopersicum HOM05D004836 ORTHO05D005150 1.8e-60 239.2 767 30.8
THA.LOC104811669 Tarenaya hassleriana HOM05D004836 ORTHO05D005150 3.1e-60 238.4 720 36.0
Glyma.20G112200 Glycine max HOM05D004836 ORTHO05D005150 9.0e-60 236.9 771 32.4
Nitab4.5_0002736g0020 Nicotiana tabacum HOM05D004836 ORTHO05D005150 1.2e-59 236.5 618 37.1
Lj5g0000015 Lotus japonicus HOM05D004836 ORTHO05D005150 1.5e-59 236.1 1153 28.1
Sopen07g033810 Solanum pennellii HOM05D004836 ORTHO05D005150 1.5e-59 236.1 759 30.7
Nn1g03169 Nelumbo nucifera HOM05D004836 ORTHO05D005150 3.4e-59 235.0 734 34.7
CAN.G623.12 Capsicum annuum HOM05D004836 ORTHO05D005150 9.9e-59 233.4 751 31.6
arahy.Tifrunner.gnm1.ann1.LI7RG4 Arachis hypogaea HOM05D004836 ORTHO05D005150 1.7e-58 232.6 1028 29.7
Phvul.003G265300 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 2.9e-58 231.9 605 34.9
AL8G31380 Arabidopsis lyrata HOM05D004836 ORTHO05D005150 3.2e-57 228.4 648 35.8
HanXRQChr13g0408421 Helianthus annuus HOM05D004836 ORTHO05D005150 1.2e-56 226.5 1555 25.4
Sc03g0011420 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.1e-56 225.7 609 33.7
SGA_v2.0_scaffold168G38564 Striga asiatica HOM05D004836 ORTHO05D005150 7.9e-56 223.8 1647 25.2
Sc03g0011330 Simmondsia chinensis HOM05D004836 ORTHO05D005150 2.3e-55 222.2 609 33.3
Ah.06g181450 Amaranthus hybridus HOM05D004836 ORTHO05D005150 3.9e-55 221.5 1529 24.5
MD11G1030200 Malus domestica HOM05D004836 ORTHO05D005150 3.9e-55 221.5 455 42.6
Lsat_1_v5_gn_9_90560 Lactuca sativa HOM05D004836 ORTHO05D005150 8.7e-55 220.3 1585 26.1
Phvul.007G023800 Phaseolus vulgaris HOM05D004836 ORTHO05D005150 8.7e-55 220.3 610 34.6
Sp6g17700 Schrenkiella parvula HOM05D004836 ORTHO05D005150 8.7e-55 220.3 667 37.0
Aa31LG3G11720 Aethionema arabicum HOM05D004836 ORTHO05D005150 1.5e-54 219.5 717 34.0
AT5G55820 Arabidopsis thaliana HOM05D004836 ORTHO05D005150 1.9e-54 219.2 672 35.0
Carub.0008s1617 Capsella rubella HOM05D004836 ORTHO05D005150 2.5e-54 218.8 1676 26.2
Peaxi162Scf00139g01321 Petunia axillaris HOM05D004836 ORTHO05D005150 4.8e-53 214.5 626 33.1
Rhsim04G0012500 Rhododendron simsii HOM05D004836 ORTHO05D005150 4.8e-53 214.5 1378 26.5
AUR62036461 Chenopodium quinoa HOM05D004836 ORTHO05D005150 6.2e-53 214.2 1552 24.5
CARHR269190 Cardamine hirsuta HOM05D004836 ORTHO05D005150 3.4e-51 208.4 643 35.3
Hund23108 Selenicereus undatus HOM05D004836 ORTHO05D005150 4.5e-51 208.0 778 31.2
arahy.Tifrunner.gnm1.ann1.D5NCPP Arachis hypogaea HOM05D004836 ORTHO05D005150 7.6e-51 207.2 1104 28.4
Oeu046935.1 Olea europaea HOM05D004836 ORTHO05D005150 2.9e-50 205.3 502 32.9
Lalb_Chr21g0309081 Lupinus albus HOM05D004836 ORTHO05D005150 1.1e-49 203.4 999 28.5
AUR62017108 Chenopodium quinoa HOM05D004836 ORTHO05D005150 7.1e-49 200.7 1576 23.4
Hund20644 Selenicereus undatus HOM05D004836 ORTHO05D005150 9.3e-49 200.3 612 33.5
Aqoxy4G02292 Aquilegia oxysepala HOM05D004836 ORTHO05D005150 1.5e-46 193.0 661 35.6
SGA_v2.0_scaffold171G38861 Striga asiatica HOM05D004836 ORTHO05D005150 1.5e-46 193.0 785 29.9
TPR.G26309 Trifolium pratense HOM05D004836 ORTHO05D005150 2.5e-46 192.2 498 32.9
Thhalv10012421m.g Eutrema salsugineum HOM05D004836 ORTHO05D005150 1.6e-45 189.5 680 35.3
C03p16240 Brassica napus HOM05D004836 ORTHO05D005150 1.8e-44 186.0 678 34.7
EL10Ac4g07562 Beta vulgaris HOM05D004836 ORTHO05D005150 5.3e-44 184.5 1582 24.3
MBI15_g03895_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 1.7e-42 179.5 640 29.8
BolC3t14046H Brassica oleracea HOM05D004836 ORTHO05D005150 4.9e-42 177.9 671 35.2
VMungo0720G3177 Vigna mungo HOM05D004836 ORTHO05D005150 8.4e-42 177.2 604 30.0
DCAR_013235 Daucus carota HOM05D004836 ORTHO05D005150 1.9e-41 176.0 616 33.1
BraA03t10683Z Brassica rapa HOM05D004836 ORTHO05D005150 3.2e-41 175.3 672 35.1
A03p13800 Brassica napus HOM05D004836 ORTHO05D005150 7.1e-41 174.1 671 34.9
Hma1.2p1_1109F.1_g258180 Hydrangea macrophylla HOM05D004836 ORTHO05D005150 1.3e-37 163.3 277 41.2
HanXRQChr03g0074011 Helianthus annuus HOM05D004836 ORTHO05D005150 3.7e-37 161.8 1341 25.2
ECA240G1942 Erigeron canadensis HOM05D004836 ORTHO05D000368 6.3e-37 161.0 654 34.1
Psat6g230520 Pisum sativum HOM05D004836 ORTHO05D005150 8.2e-37 160.6 1634 23.7
vmacro11592 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 8.4e-34 150.6 318 36.5
Lj1A890T52 Lonicera japonica HOM05D004836 ORTHO05D005150 2.3e-31 142.5 691 28.1
TWI39G0173 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 6.7e-31 141.0 217 41.0
AUR62006337 Chenopodium quinoa HOM05D004836 ORTHO05D005150 2.0e-27 129.4 409 30.8
AUR62044127 Chenopodium quinoa HOM05D004836 ORTHO05D005150 4.2e-25 121.7 1196 22.7
arahy.Tifrunner.gnm1.ann1.TB163P Arachis hypogaea HOM05D004836 ORTHO05D005150 1.6e-24 119.8 220 37.7
HPP92_018201 Vanilla planifolia HOM05D004836 ORTHO05D005150 2.2e-21 109.4 618 28.0
ATR0751G141 Amborella trichopoda HOM05D004836 ORTHO05D005150 8.2e-21 107.5 620 29.7
BcaB08g35941 Brassica carinata HOM05D004836 ORTHO05D005150 2.9e-18 99.0 443 28.0
Actinidia30399 Actinidia chinensis HOM05D004836 ORTHO05D005150 3.8e-18 98.6 73 60.3
TWI39G0060 Tripterygium wilfordii HOM05D004836 ORTHO05D005150 3.2e-17 95.5 244 32.0
vmacro11593 Vaccinium macrocarpon HOM05D004836 ORTHO05D005150 3.2e-17 95.5 278 31.3
BcaC01g06394 Brassica carinata HOM05D004836 ORTHO05D005150 3.3e-14 85.5 263 32.7
TPR.G26295 Trifolium pratense HOM05D004836 ORTHO05D005150 5.7e-14 84.7 157 36.9
MD00G1168200 Malus domestica HOM05D004836 ORTHO05D005150 8.2e-13 80.9 147 39.5
Actinidia30401 Actinidia chinensis HOM05D004836 ORTHO05D005150 5.3e-12 78.2 53 64.2
Os09g0477700 Oryza sativa ssp. japonica HOM05D028105 ORTHO05D005150 5.3e-12 78.2 371 27.5
MD03G1025800 Malus domestica HOM05D004836 ORTHO05D005150 9.1e-12 77.4 234 47.9
BcaB08g35940 Brassica carinata HOM05D004836 ORTHO05D005150 2.0e-11 76.3 511 25.4
unitig_22.g5946 Utricularia gibba HOM05D004836 ORTHO05D005150 1.0e-10 73.9 280 27.9
Psat2g132080 Pisum sativum HOM05D004836 ORTHO05D005150 1.7e-10 73.2 205 30.7
Cpa.g.c38368 Carica papaya HOM05D004836 ORTHO05D005150 1.1e-09 70.5 48 62.5
CDE04G0223 Ceratophyllum demersum HOM05D000588 ORTHO05D005150 1.5e-09 70.1 1167 22.4
PSO541G5284 Papaver somniferum HOM05D004836 ORTHO05D005150 1.5e-09 70.1 181 29.8
PSO675G3612 Papaver somniferum HOM05D004836 ORTHO05D005150 1.5e-09 70.1 181 29.8
SEGI_26437 Sequoiadendron giganteum HOM05D014698 ORTHO05D016532 1.5e-09 70.1 431 28.3
ATR0712G030 Amborella trichopoda HOM05D004836 ORTHO05D005150 7.2e-09 67.8 107 33.6
RhsimUnG0156400 Rhododendron simsii HOM05D000074 ORTHO05D001262 1.0e-07 63.9 53 52.8
CDE02G4444 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 1.4e-07 63.5 314 26.1
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 2.3e-07 62.8 76 44.7
CDE02G2584 Ceratophyllum demersum HOM05D004836 ORTHO05D005150 5.2e-07 61.6 53 66.0
HanXRQChr03g0074021 Helianthus annuus HOM05D004836 ORTHO05D005150 6.7e-07 61.2 63 47.6
MBI14_g10145_MAGBIO Magnolia biondii HOM05D004836 ORTHO05D005150 6.7e-07 61.2 52 51.9
CBR_g22984 Chara braunii HOM05D014698 ORTHO05D016532 2.6e-06 59.3 119 31.9


User provided reference genes

Program Settings