Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0522 Cannabis sativa HOM05D005057 ORTHO05D006570 1.6e-266 922.2 462 100.0
Prupe.4G059900 Prunus persica HOM05D005057 ORTHO05D006570 3.3e-203 711.8 460 79.1
MD10G1281300 Malus domestica HOM05D005057 ORTHO05D006570 6.3e-202 707.6 463 77.8
RcHm_v2.0_Chr5g0010551 Rosa chinensis HOM05D005057 ORTHO05D006570 3.1e-201 705.3 464 79.5
FAN07G2484 Fragaria x ananassa HOM05D005057 ORTHO05D006570 1.7e-199 699.5 462 78.1
ClCG03G007800 Citrullus lanatus HOM05D005057 ORTHO05D006570 6.5e-199 697.6 453 79.5
Ciclev10014965m.g Citrus clementina HOM05D005057 ORTHO05D006570 4.7e-197 691.4 460 77.2
CsaV3_1G033430 Cucumis sativus L. HOM05D005057 ORTHO05D006570 8.8e-196 687.2 460 76.5
MELO3C002642.2 Cucumis melo HOM05D005057 ORTHO05D006570 1.5e-195 686.4 459 76.9
Thecc.06G172400 Theobroma cacao HOM05D005057 ORTHO05D006570 5.7e-195 684.5 455 76.9
CiPaw.09G069000 Carya illinoinensis HOM05D005057 ORTHO05D006570 3.7e-194 681.8 461 76.4
FvH4_3g07940 Fragaria vesca HOM05D005057 ORTHO05D006570 1.6e-192 676.4 454 76.4
Gorai.010G158900 Gossypium raimondii HOM05D005057 ORTHO05D006570 2.0e-192 676.0 435 78.9
Gohir.A06G130800 Gossypium hirsutum HOM05D005057 ORTHO05D006570 7.7e-192 674.1 424 80.0
Sabra11G0046800 Salix brachista HOM05D005057 ORTHO05D006570 2.9e-191 672.2 469 74.2
Actinidia16804 Actinidia chinensis HOM05D005057 ORTHO05D006570 3.2e-190 668.7 450 76.9
Hma1.2p1_0155F.1_g068170 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 6.7e-188 661.0 400 81.8
Potri.011G065000 Populus trichocarpa HOM05D005057 ORTHO05D006570 6.7e-188 661.0 461 73.5
Manes.16G037800 Manihot esculenta HOM05D005057 ORTHO05D006570 1.1e-187 660.2 422 78.9
Aqoxy4G00443 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 1.4e-185 653.3 400 80.5
Eucgr.D00512 Eucalyptus grandis HOM05D005057 ORTHO05D006570 1.4e-185 653.3 464 72.8
GSVIVG01021196001 Vitis vinifera HOM05D005057 ORTHO05D006570 3.1e-185 652.1 464 73.7
Migut.H01447 Erythranthe guttata HOM05D005057 ORTHO05D006570 4.1e-185 651.7 468 72.4
Medtr2g015860 Medicago truncatula HOM05D005057 ORTHO05D006570 5.3e-185 651.4 448 75.2
PSO063G4235 Papaver somniferum HOM05D005057 ORTHO05D006570 5.3e-185 651.4 457 73.1
Sopen02g021880 Solanum pennellii HOM05D005057 ORTHO05D006570 1.6e-184 649.8 455 73.4
TWI38G0714 Tripterygium wilfordii HOM05D005057 ORTHO05D006570 3.5e-184 648.7 477 71.1
PGR004G2757 Punica granatum HOM05D005057 ORTHO05D006570 1.3e-183 646.7 453 73.3
Glyma.13G230500 Glycine max HOM05D005057 ORTHO05D006570 1.7e-183 646.4 470 71.3
Lj6g0017686 Lotus japonicus HOM05D005057 ORTHO05D006570 5.0e-183 644.8 490 69.8
arahy.Tifrunner.gnm1.ann1.E17GNY Arachis hypogaea HOM05D005057 ORTHO05D006570 1.9e-182 642.9 400 80.0
Atru.chr10.1683 Acer truncatum HOM05D005057 ORTHO05D006570 4.2e-182 641.7 489 69.5
Lalb_Chr15g0089481 Lupinus albus HOM05D005057 ORTHO05D006570 4.2e-182 641.7 402 80.3
arahy.Tifrunner.gnm1.ann1.9TM733 Arachis hypogaea HOM05D005057 ORTHO05D006570 5.5e-182 641.3 400 79.8
Rhsim13G0191300 Rhododendron simsii HOM05D005057 ORTHO05D006570 4.7e-181 638.3 385 82.1
FvH4_4g20380 Fragaria vesca HOM05D005057 ORTHO05D006570 1.4e-180 636.7 383 83.0
CAN.G370.63 Capsicum annuum HOM05D005057 ORTHO05D006570 7.5e-179 630.9 385 81.0
Sc12g0008060 Simmondsia chinensis HOM05D005057 ORTHO05D006570 6.3e-178 627.9 405 77.8
DCAR_004016 Daucus carota HOM05D005057 ORTHO05D006570 1.1e-177 627.1 446 72.2
Cc02_g14710 Coffea canephora HOM05D005057 ORTHO05D006570 5.4e-177 624.8 409 77.0
ATR0602G189 Amborella trichopoda HOM05D005057 ORTHO05D006570 9.1e-177 624.0 432 74.1
HanXRQChr13g0397391 Helianthus annuus HOM05D005057 ORTHO05D006570 9.1e-177 624.0 431 74.2
AL4G30000 Arabidopsis lyrata HOM05D005057 ORTHO05D006570 1.2e-176 623.6 428 75.2
BcaB02g10615 Brassica carinata HOM05D005057 ORTHO05D006570 3.5e-176 622.1 390 79.7
VMungo0540G0206 Vigna mungo HOM05D005057 ORTHO05D006570 7.7e-176 620.9 410 76.1
Ca_00428_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.7e-175 619.8 389 81.5
Carub.0004s1572 Capsella rubella HOM05D005057 ORTHO05D006570 2.2e-175 619.4 415 76.1
Thhalv10016658m.g Eutrema salsugineum HOM05D005057 ORTHO05D006570 6.5e-175 617.8 429 74.8
Sp4g16440 Schrenkiella parvula HOM05D005057 ORTHO05D006570 1.1e-174 617.1 413 76.3
A05p11560 Brassica napus HOM05D005057 ORTHO05D006570 1.5e-174 616.7 392 79.3
Haze_06250 Corylus avellana HOM05D005057 ORTHO05D006570 2.5e-174 615.9 436 74.5
THA.LOC104814250 Tarenaya hassleriana HOM05D005057 ORTHO05D006570 7.2e-174 614.4 445 72.4
ECA236G3111 Erigeron canadensis HOM05D005057 ORTHO05D006570 1.2e-173 613.6 438 73.3
SalBow7G0088 Salvia bowleyana HOM05D005057 ORTHO05D006570 4.7e-173 611.7 435 74.5
AT2G34090 Arabidopsis thaliana HOM05D005057 ORTHO05D006570 6.1e-173 611.3 422 74.6
Aa31LG9G13900 Aethionema arabicum HOM05D005057 ORTHO05D006570 4.0e-172 608.6 415 75.2
Oeu041787.3 Olea europaea HOM05D005057 ORTHO05D006570 2.0e-171 606.3 374 80.2
BraA05t20104Z Brassica rapa HOM05D005057 ORTHO05D006570 3.4e-171 605.5 443 71.6
vmacro03932 Vaccinium macrocarpon HOM05D005057 ORTHO05D006570 9.8e-171 604.0 590 58.6
C04p15030 Brassica napus HOM05D005057 ORTHO05D006570 1.3e-170 603.6 415 74.7
SGA_v2.0_scaffold307G48045 Striga asiatica HOM05D005057 ORTHO05D006570 3.7e-170 602.1 469 67.8
CARHR128190 Cardamine hirsuta HOM05D005057 ORTHO05D006570 6.3e-170 601.3 383 79.1
EL10Ac8g20510 Beta vulgaris HOM05D005057 ORTHO05D006570 7.7e-168 594.3 435 69.7
BolC4t23078H Brassica oleracea HOM05D005057 ORTHO05D006570 1.0e-167 594.0 443 71.3
CDE10G0488 Ceratophyllum demersum HOM05D005057 ORTHO05D006570 6.6e-167 591.3 369 79.9
Gohir.D06G136700 Gossypium hirsutum HOM05D005057 ORTHO05D006570 2.1e-165 586.3 435 71.0
MSTRG.13217 Avicennia marina HOM05D005057 ORTHO05D006570 2.8e-165 585.9 450 68.2
Lj2A297G103 Lonicera japonica HOM05D005057 ORTHO05D006570 3.0e-164 582.4 383 76.5
FAN11G1223 Fragaria x ananassa HOM05D005057 ORTHO05D006570 6.8e-164 581.3 498 64.5
Ah.09g233650 Amaranthus hybridus HOM05D005057 ORTHO05D006570 8.9e-164 580.9 414 72.0
MBI06_g25988_MAGBIO Magnolia biondii HOM05D005057 ORTHO05D006570 8.9e-164 580.9 447 70.0
Phvul.006G176700 Phaseolus vulgaris HOM05D005057 ORTHO05D006570 8.9e-164 580.9 471 66.0
AUR62031175 Chenopodium quinoa HOM05D005057 ORTHO05D006570 8.3e-162 574.3 354 80.5
Sed0014368 Sechium edule HOM05D005057 ORTHO05D006570 1.9e-153 546.6 453 65.1
Dinv04618 Davidia involucrata HOM05D005057 ORTHO05D006570 7.0e-153 544.7 419 68.0
Aqoxy12s001 Aquilegia oxysepala HOM05D005057 ORTHO05D006570 2.0e-152 543.1 344 80.5
COL.COLO4_31315 Corchorus olitorius HOM05D005057 ORTHO05D006570 7.8e-152 541.2 389 71.5
AagrBONN_evm.TU.Sc2ySwM_344.2851 Anthoceros agrestis HOM05D005057 ORTHO05D006570 8.6e-151 537.7 399 67.7
FAN25G1331 Fragaria x ananassa HOM05D005057 ORTHO05D006570 7.3e-150 534.6 458 65.5
Mapoly0152s0011 Marchantia polymorpha HOM05D005057 ORTHO05D006570 1.4e-148 530.4 405 66.9
FAN16G2413 Fragaria x ananassa HOM05D005057 ORTHO05D006570 4.0e-148 528.9 456 64.5
Duzib160G0357 Durio zibethinus HOM05D005057 ORTHO05D006570 7.5e-147 524.6 456 61.6
Pp3c16_13000 Physcomitrium patens HOM05D005057 ORTHO05D006570 3.0e-143 512.7 399 67.2
Hma1.2p1_0155F.1_g068180 Hydrangea macrophylla HOM05D005057 ORTHO05D006570 4.4e-139 498.8 358 71.8
SMO142G0032 Selaginella moellendorffii HOM05D005057 ORTHO05D006570 4.4e-139 498.8 382 65.4
Lsat_1_v5_gn_7_23040 Lactuca sativa HOM05D005057 ORTHO05D006570 9.9e-139 497.7 436 62.4
AUR62036592 Chenopodium quinoa HOM05D005057 ORTHO05D006570 1.7e-138 496.9 390 66.9
Hund21184 Selenicereus undatus HOM05D005057 ORTHO05D006570 1.4e-137 493.8 412 65.0
Zm00001eb162010 Zea mays HOM05D005057 ORTHO05D006570 8.9e-132 474.6 292 81.2
Cpa.g.sc7.56 Carica papaya HOM05D005057 ORTHO05D006570 2.3e-127 459.9 391 63.7
PSO782G3653 Papaver somniferum HOM05D005057 ORTHO05D006570 6.4e-122 441.8 344 70.1
PRCOL_00006187 Prasinoderma coloniale HOM05D005057 ORTHO05D006570 1.5e-118 430.6 404 54.5
Psat1g199000 Pisum sativum HOM05D005057 ORTHO05D006570 7.4e-118 428.3 307 74.9
Nn1g09052 Nelumbo nucifera HOM05D005057 ORTHO05D006570 4.9e-114 415.6 261 80.5
TPR.G11697 Trifolium pratense HOM05D005057 ORTHO05D006570 4.0e-108 396.0 264 75.4
MCO11G641 Micromonas commoda HOM05D005057 ORTHO05D006570 6.9e-108 395.2 416 51.7
Cre01.g033700 Chlamydomonas reinhardtii HOM05D005057 ORTHO05D006570 2.1e-104 383.6 460 48.7
Solyc02g076950.2 Solanum lycopersicum HOM05D005057 ORTHO05D006570 4.5e-91 339.3 252 72.2
QL05p046449 Quercus lobata HOM05D005057 ORTHO05D006570 9.7e-86 321.6 538 40.7
Nitab4.5_0000681g0230 Nicotiana tabacum HOM05D005057 ORTHO05D006570 1.8e-84 317.4 250 69.2
Peaxi162Scf00261g01011 Petunia axillaris HOM05D005057 ORTHO05D006570 7.7e-83 312.0 202 73.8
Nitab4.5_0003322g0070 Nicotiana tabacum HOM05D005057 ORTHO05D006570 2.2e-82 310.5 249 69.1
Lalb_Chr18g0059151 Lupinus albus HOM05D005057 ORTHO05D006570 3.9e-79 299.7 249 70.3
Nitab4.5_0000681g0220 Nicotiana tabacum HOM05D005057 ORTHO05D006570 8.5e-74 282.0 184 72.3
TAR626G1061 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.5e-73 281.2 173 80.9
Nitab4.5_0003322g0060 Nicotiana tabacum HOM05D005057 ORTHO05D006570 4.2e-73 279.6 184 72.8
MD05G1302500 Malus domestica HOM05D005057 ORTHO05D006570 4.7e-72 276.2 341 51.3
Lalb_Chr18g0059161 Lupinus albus HOM05D005057 ORTHO05D006570 5.7e-70 269.2 189 70.9
QL05p046461 Quercus lobata HOM05D005057 ORTHO05D006570 3.1e-68 263.5 167 80.2
TPR.G30010 Trifolium pratense HOM05D005057 ORTHO05D006570 2.7e-67 260.4 232 63.4
Nn1g09100 Nelumbo nucifera HOM05D005057 ORTHO05D006570 3.5e-67 260.0 203 69.0
unitig_22.g6755 Utricularia gibba HOM05D005057 ORTHO05D006570 4.0e-63 246.5 155 79.4
Ca_30957_v3 Cicer arietinum L. HOM05D005057 ORTHO05D006570 1.3e-61 241.5 166 75.9
Os01g0613900 Oryza sativa ssp. japonica HOM05D005057 ORTHO05D006570 1.3e-61 241.5 137 85.4
BcaC04g22954 Brassica carinata HOM05D005057 ORTHO05D006570 1.6e-59 234.6 249 56.6
C09p55570 Brassica napus HOM05D005057 ORTHO05D006570 1.6e-59 234.6 249 56.6
BolC9t54241H Brassica oleracea HOM05D005057 ORTHO05D006570 1.6e-59 234.6 249 56.6
BcaC01g06160 Brassica carinata HOM05D005057 ORTHO05D006570 4.2e-57 226.5 252 57.5
HPP92_020184 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.0e-54 217.6 158 67.1
Psat1g199040 Pisum sativum HOM05D005057 ORTHO05D006570 1.9e-49 201.1 133 71.4
CSS0031450 Camellia sinensis var. sinensis HOM05D005057 ORTHO05D006570 8.9e-47 192.2 126 73.8
TAR626G0988 Trochodendron aralioides HOM05D005057 ORTHO05D006570 1.8e-44 184.5 153 69.3
HPP92_020166 Vanilla planifolia HOM05D005057 ORTHO05D006570 3.0e-42 177.2 206 52.9
SEGI_02925 Sequoiadendron giganteum HOM05D005057 ORTHO05D006570 4.1e-36 156.8 93 81.7
unitig_22.g6754 Utricularia gibba HOM05D005057 ORTHO05D006570 2.3e-34 151.0 143 53.1
unitig_22.g6756 Utricularia gibba HOM05D005057 ORTHO05D006570 4.3e-33 146.7 120 68.3
COL.COLO4_25087 Corchorus olitorius HOM05D005057 ORTHO05D006570 2.2e-29 134.4 74 82.4
RcHm_v2.0_Chr5g0010591 Rosa chinensis HOM05D005057 ORTHO05D006570 2.4e-28 131.0 74 86.5
BolC4t26729H Brassica oleracea HOM05D005057 ORTHO05D006570 9.2e-28 129.0 97 73.2
BolC7t41970H Brassica oleracea HOM05D005057 ORTHO05D006570 3.5e-27 127.1 105 67.6
Glyma.14G170500 Glycine max HOM05D005057 ORTHO05D006570 1.0e-26 125.6 124 57.3
HPP92_020183 Vanilla planifolia HOM05D005057 ORTHO05D006570 2.0e-22 111.3 86 65.1
arahy.Tifrunner.gnm1.ann1.XF9LE9 Arachis hypogaea HOM05D005057 ORTHO05D011377 1.1e-20 105.5 164 40.9
MD16G1033100 Malus domestica HOM05D005057 ORTHO05D006570 2.4e-20 104.4 62 80.6
PSO063G0949 Papaver somniferum HOM05D005057 ORTHO05D006570 2.7e-19 100.9 179 40.8
Medtr2g015780 Medicago truncatula HOM05D005057 ORTHO05D006570 9.0e-15 85.9 58 70.7
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 3.5e-11 73.9 73 53.4
RcHm_v2.0_Chr5g0010491 Rosa chinensis HOM05D005057 ORTHO05D006570 1.5e-09 68.6 155 34.8
BolC8t49834H Brassica oleracea HOM05D005057 ORTHO05D019871 9.0e-07 59.3 132 34.1


User provided reference genes

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