Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0514 Cannabis sativa HOM05D001991 ORTHO05D002030 8.8e-86 320.5 188 100.0
CANSAT25G2203 Cannabis sativa HOM05D001991 ORTHO05D002030 1.3e-28 130.6 72 91.7
Ah.01g022660 Amaranthus hybridus HOM05D001991 ORTHO05D002030 2.8e-15 86.3 75 61.3
ClCG02G004270 Citrullus lanatus HOM05D001991 ORTHO05D002030 4.8e-15 85.5 74 63.5
RcHm_v2.0_Chr6g0244781 Rosa chinensis HOM05D001991 ORTHO05D002030 1.1e-14 84.3 65 67.7
Sed0010328 Sechium edule HOM05D001991 ORTHO05D002030 1.4e-14 84.0 74 59.5
TPR.G19905 Trifolium pratense HOM05D001991 ORTHO05D002030 3.1e-14 82.8 68 61.8
Peaxi162Scf00362g00949 Petunia axillaris HOM05D001991 ORTHO05D002030 4.0e-14 82.4 67 62.7
GSVIVG01024072001 Vitis vinifera HOM05D001991 ORTHO05D002030 6.9e-14 81.6 75 61.3
FAN27G1115 Fragaria x ananassa HOM05D001991 ORTHO05D002030 1.2e-13 80.9 71 63.4
Sopen01g053250 Solanum pennellii HOM05D001991 ORTHO05D002030 1.2e-13 80.9 78 55.1
Prupe.8G161300 Prunus persica HOM05D001991 ORTHO05D002030 2.0e-13 80.1 65 67.7
arahy.Tifrunner.gnm1.ann1.H3HBDV Arachis hypogaea HOM05D001991 ORTHO05D002030 3.4e-13 79.3 74 59.5
Solyc01g111200.3 Solanum lycopersicum HOM05D001991 ORTHO05D002030 3.4e-13 79.3 78 53.8
arahy.Tifrunner.gnm1.ann1.CXE5JY Arachis hypogaea HOM05D001991 ORTHO05D002030 4.5e-13 79.0 74 59.5
FvH4_2g01750 Fragaria vesca HOM05D001991 ORTHO05D002030 4.5e-13 79.0 71 62.0
FAN15G2134 Fragaria x ananassa HOM05D001991 ORTHO05D002030 4.5e-13 79.0 71 62.0
FAN24G0537 Fragaria x ananassa HOM05D001991 ORTHO05D002030 4.5e-13 79.0 71 62.0
MD05G1116800 Malus domestica HOM05D001991 ORTHO05D002030 4.5e-13 79.0 64 67.2
Nn5g29104 Nelumbo nucifera HOM05D001991 ORTHO05D002030 5.8e-13 78.6 67 65.7
MSTRG.20015 Avicennia marina HOM05D001991 ORTHO05D002030 7.6e-13 78.2 72 61.1
SGA_v2.0_scaffold58G20423 Striga asiatica HOM05D001375 ORTHO05D001222 7.6e-13 78.2 68 63.2
Dinv41971 Davidia involucrata HOM05D001991 ORTHO05D002030 9.9e-13 77.8 67 64.2
AT4G38710 Arabidopsis thaliana HOM05D001991 ORTHO05D002030 1.3e-12 77.4 68 64.7
AUR62010082 Chenopodium quinoa HOM05D001991 ORTHO05D002030 1.3e-12 77.4 79 54.4
MELO3C020790.2 Cucumis melo HOM05D001991 ORTHO05D002030 1.3e-12 77.4 64 60.9
CsaV3_2G015760 Cucumis sativus L. HOM05D001991 ORTHO05D002030 1.3e-12 77.4 64 60.9
Psat7g174440 Pisum sativum HOM05D001991 ORTHO05D002030 1.3e-12 77.4 69 59.4
Sc08g0003150 Simmondsia chinensis HOM05D001991 ORTHO05D002030 1.3e-12 77.4 68 58.8
MELO3C013373.2 Cucumis melo HOM05D001991 ORTHO05D002030 2.9e-12 76.3 74 55.4
Nitab4.5_0000980g0040 Nicotiana tabacum HOM05D001991 ORTHO05D002030 2.9e-12 76.3 68 58.8
AL7G10600 Arabidopsis lyrata HOM05D001991 ORTHO05D002030 3.8e-12 75.9 67 64.2
CSS0044440 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 3.8e-12 75.9 70 62.9
Cc02_g16460 Coffea canephora HOM05D001991 ORTHO05D002030 3.8e-12 75.9 66 60.6
Thhalv10025358m.g Eutrema salsugineum HOM05D001991 ORTHO05D002030 3.8e-12 75.9 69 62.3
MD10G1119900 Malus domestica HOM05D001991 ORTHO05D002030 3.8e-12 75.9 64 64.1
SalBow3G1371 Salvia bowleyana HOM05D001991 ORTHO05D002030 3.8e-12 75.9 67 59.7
TWI79G0271 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 3.8e-12 75.9 73 54.8
MSTRG.16883 Avicennia marina HOM05D001991 ORTHO05D002030 4.9e-12 75.5 66 59.1
CsaV3_7G000840 Cucumis sativus L. HOM05D001991 ORTHO05D002030 4.9e-12 75.5 74 55.4
Lalb_Chr01g0001671 Lupinus albus HOM05D001991 ORTHO05D002030 4.9e-12 75.5 70 61.4
Medtr4g074040 Medicago truncatula HOM05D001991 ORTHO05D002030 4.9e-12 75.5 65 58.5
HPP92_026027 Vanilla planifolia HOM05D001991 ORTHO05D002030 4.9e-12 75.5 67 59.7
ClCG02G011610 Citrullus lanatus HOM05D001991 ORTHO05D002030 6.4e-12 75.1 64 59.4
FAN20G2078 Fragaria x ananassa HOM05D001991 ORTHO05D002030 6.4e-12 75.1 70 60.0
QL11p047710 Quercus lobata HOM05D001991 ORTHO05D002030 6.4e-12 75.1 72 52.8
Sed0007163 Sechium edule HOM05D001991 ORTHO05D002030 6.4e-12 75.1 64 59.4
Ciclev10028634m.g Citrus clementina HOM05D001991 ORTHO05D002030 8.4e-12 74.7 75 53.3
HPP92_027732 Vanilla planifolia HOM05D001991 ORTHO05D002030 8.4e-12 74.7 67 59.7
VMungo1127G1801 Vigna mungo HOM05D001991 ORTHO05D002030 8.4e-12 74.7 74 55.4
MBI09_g29903_MAGBIO Magnolia biondii HOM05D001991 ORTHO05D002030 1.1e-11 74.3 65 61.5
Oeu042186.2 Olea europaea HOM05D001991 ORTHO05D002030 1.1e-11 74.3 76 56.6
CSS0034955 Camellia sinensis var. sinensis HOM05D001991 ORTHO05D002030 1.4e-11 73.9 66 63.6
SalBow6G0737 Salvia bowleyana HOM05D001991 ORTHO05D002030 1.4e-11 73.9 66 60.6
Hund06409 Selenicereus undatus HOM05D001991 ORTHO05D002030 1.4e-11 73.9 74 55.4
Carub.0007s0058 Capsella rubella HOM05D001991 ORTHO05D002030 1.9e-11 73.6 66 59.1
Sp7g37080 Schrenkiella parvula HOM05D001991 ORTHO05D002030 1.9e-11 73.6 67 61.2
SGA_v2.0_scaffold32G13265 Striga asiatica HOM05D006293 ORTHO05D007971 1.9e-11 73.6 70 61.4
Ca_03054_v3 Cicer arietinum L. HOM05D001991 ORTHO05D002030 2.4e-11 73.2 68 55.9
HPP92_022645 Vanilla planifolia HOM05D001991 ORTHO05D002030 2.4e-11 73.2 76 51.3
BcaB03g12220 Brassica carinata HOM05D001991 ORTHO05D002030 3.2e-11 72.8 66 62.1
Dinv04963 Davidia involucrata HOM05D006293 ORTHO05D007971 3.2e-11 72.8 65 60.0
Migut.B00116 Erythranthe guttata HOM05D001991 ORTHO05D002030 3.2e-11 72.8 79 51.9
Glyma.11G105400 Glycine max HOM05D001991 ORTHO05D002030 3.2e-11 72.8 74 52.7
Lalb_Chr03g0025001 Lupinus albus HOM05D001991 ORTHO05D002030 3.2e-11 72.8 63 60.3
Nitab4.5_0000283g0030 Nicotiana tabacum HOM05D001991 ORTHO05D002030 3.2e-11 72.8 72 54.2
THA.LOC104804098 Tarenaya hassleriana HOM05D001991 ORTHO05D002030 4.2e-11 72.4 67 58.2
Gohir.A04G122600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 5.4e-11 72.0 75 52.0
Lsat_1_v5_gn_4_74740 Lactuca sativa HOM05D001991 ORTHO05D002030 5.4e-11 72.0 64 57.8
Manes.11G090500 Manihot esculenta HOM05D001991 ORTHO05D002030 5.4e-11 72.0 69 50.7
BcaC01g00250 Brassica carinata HOM05D001991 ORTHO05D002030 7.1e-11 71.6 68 58.8
C03p77250 Brassica napus HOM05D001991 ORTHO05D002030 7.1e-11 71.6 68 58.8
BolC3t19979H Brassica oleracea HOM05D001991 ORTHO05D002030 7.1e-11 71.6 68 58.8
BraA08t34362Z Brassica rapa HOM05D001991 ORTHO05D002030 7.1e-11 71.6 68 58.8
CDE05G1573 Ceratophyllum demersum HOM05D001991 ORTHO05D002030 7.1e-11 71.6 65 56.9
Duzib052G0141 Durio zibethinus HOM05D001991 ORTHO05D002030 7.1e-11 71.6 67 55.2
Phvul.011G033300 Phaseolus vulgaris HOM05D001991 ORTHO05D002030 7.1e-11 71.6 66 57.6
Actinidia20489 Actinidia chinensis HOM05D001991 ORTHO05D002030 9.3e-11 71.2 70 58.6
Aa31LG6G16470 Aethionema arabicum HOM05D001991 ORTHO05D002030 9.3e-11 71.2 68 57.4
CARHR294420 Cardamine hirsuta HOM05D001991 ORTHO05D002030 1.2e-10 70.9 72 56.9
DCAR_022779 Daucus carota HOM05D001991 ORTHO05D002030 1.2e-10 70.9 68 55.9
Glyma.12G030200 Glycine max HOM05D001991 ORTHO05D002030 1.2e-10 70.9 73 56.2
HanXRQChr10g0298951 Helianthus annuus HOM05D001991 ORTHO05D002030 1.2e-10 70.9 71 56.3
Oeu050537.1 Olea europaea HOM05D001991 ORTHO05D002030 1.2e-10 70.9 66 57.6
Sed0026833 Sechium edule HOM05D001991 ORTHO05D002030 1.2e-10 70.9 64 54.7
TAR628G0391 Trochodendron aralioides HOM05D001991 ORTHO05D002030 1.2e-10 70.9 66 56.1
COL.COLO4_17265 Corchorus olitorius HOM05D001991 ORTHO05D002030 1.6e-10 70.5 67 55.2
Oeu055650.2 Olea europaea HOM05D001991 ORTHO05D002030 2.1e-10 70.1 64 60.9
Rhsim11G0188300 Rhododendron simsii HOM05D001991 ORTHO05D002030 2.1e-10 70.1 68 58.8
Lj3g0017262 Lotus japonicus HOM05D001991 ORTHO05D002030 2.7e-10 69.7 66 56.1
PGR142G0784 Punica granatum HOM05D001991 ORTHO05D002030 2.7e-10 69.7 64 57.8
CDE05G1487 Ceratophyllum demersum HOM05D001991 ORTHO05D002030 3.5e-10 69.3 67 56.7
Duzib248G0809 Durio zibethinus HOM05D001991 ORTHO05D002030 4.6e-10 68.9 67 49.3
Gohir.A12G038700 Gossypium hirsutum HOM05D001991 ORTHO05D002030 4.6e-10 68.9 75 50.7
Oeu060420.1 Olea europaea HOM05D001991 ORTHO05D002030 4.6e-10 68.9 65 56.9
Gohir.D04G164600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 6.0e-10 68.6 67 52.2
Gohir.D12G033600 Gossypium hirsutum HOM05D001991 ORTHO05D002030 6.0e-10 68.6 75 50.7
Gorai.008G034500 Gossypium raimondii HOM05D001991 ORTHO05D002030 6.0e-10 68.6 75 50.7
Gorai.012G153000 Gossypium raimondii HOM05D001991 ORTHO05D002030 6.0e-10 68.6 67 52.2
TWI75G0461 Tripterygium wilfordii HOM05D001991 ORTHO05D002030 6.0e-10 68.6 67 56.7
Potri.009G130200 Populus trichocarpa HOM05D001991 ORTHO05D002030 7.9e-10 68.2 73 54.8
CiPaw.06G124800 Carya illinoinensis HOM05D001991 ORTHO05D002030 1.0e-09 67.8 65 55.4
DCAR_009939 Daucus carota HOM05D000460 ORTHO05D000333 1.0e-09 67.8 71 50.7
Lj5P183T88 Lonicera japonica HOM05D001991 ORTHO05D002030 1.0e-09 67.8 64 53.1
unitig_0.g828 Utricularia gibba HOM05D001991 ORTHO05D002030 1.0e-09 67.8 66 54.5
DCAR_012115 Daucus carota HOM05D001991 ORTHO05D002030 1.3e-09 67.4 71 50.7
TAR376G0062 Trochodendron aralioides HOM05D001991 ORTHO05D002030 2.3e-09 66.6 67 56.7
PSO675G7637 Papaver somniferum HOM05D001991 ORTHO05D002030 3.0e-09 66.2 70 50.0
Cpa.g.sc37.183 Carica papaya HOM05D001991 ORTHO05D002030 3.9e-09 65.9 64 56.2
CiPaw.05G077800 Carya illinoinensis HOM05D001991 ORTHO05D002030 3.9e-09 65.9 71 54.9
Haze_02190 Corylus avellana HOM05D001991 ORTHO05D002030 3.9e-09 65.9 67 55.2
PSO541G0135 Papaver somniferum HOM05D001991 ORTHO05D002030 6.7e-09 65.1 70 50.0
Thecc.02G066300 Theobroma cacao HOM05D001991 ORTHO05D002030 6.7e-09 65.1 67 50.7
unitig_21.g20015 Utricularia gibba HOM05D001991 ORTHO05D002030 6.7e-09 65.1 64 56.2
Sabra09G0099600 Salix brachista HOM05D001991 ORTHO05D002030 8.7e-09 64.7 66 56.1
Sabra09G0100900 Salix brachista HOM05D001991 ORTHO05D002030 8.7e-09 64.7 66 56.1
Sed0008982 Sechium edule HOM05D001991 ORTHO05D002030 1.5e-08 63.9 73 52.1
Gohir.A03G203500 Gossypium hirsutum HOM05D001991 ORTHO05D002030 1.9e-08 63.5 67 50.7
Gorai.005G252600 Gossypium raimondii HOM05D001991 ORTHO05D002030 1.9e-08 63.5 67 50.7
Lj9P390T58 Lonicera japonica HOM05D001991 ORTHO05D002030 1.9e-08 63.5 64 53.1
Cfa005190 Carpinus fangiana HOM05D001991 ORTHO05D002030 2.5e-08 63.2 67 56.7
ECA234G1535 Erigeron canadensis HOM05D001991 ORTHO05D007971 3.3e-08 62.8 73 49.3
Gohir.D02G224800 Gossypium hirsutum HOM05D001991 ORTHO05D002030 3.3e-08 62.8 67 52.2
Potri.004G169100 Populus trichocarpa HOM05D001991 ORTHO05D002030 4.3e-08 62.4 67 50.7
Sabra04G0113400 Salix brachista HOM05D001991 ORTHO05D002030 7.4e-08 61.6 67 52.2
A08p24060 Brassica napus HOM05D001991 ORTHO05D002030 1.3e-07 60.8 67 55.2
vmacro02254 Vaccinium macrocarpon HOM05D001991 ORTHO05D002030 1.6e-07 60.5 74 50.0
Os02g0439700 Oryza sativa ssp. japonica HOM05D001991 ORTHO05D002030 6.2e-07 58.5 71 46.5
Sed0018167 Sechium edule HOM05D001991 ORTHO05D002030 6.2e-07 58.5 61 47.5
DCAR_022778 Daucus carota HOM05D001991 ORTHO05D002030 8.1e-07 58.2 32 78.1
SMO230G0025 Selaginella moellendorffii HOM05D001991 ORTHO05D002030 1.1e-06 57.8 80 43.8
EL10Ac9g21429 Beta vulgaris HOM05D001991 ORTHO05D002030 1.4e-06 57.4 100 39.0
Sc04g0009620 Simmondsia chinensis HOM05D001991 ORTHO05D002030 3.1e-06 56.2 64 51.6
Hund25397 Selenicereus undatus HOM05D001991 ORTHO05D002030 9.0e-06 54.7 64 46.9


User provided reference genes

Program Settings