Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0508 Cannabis sativa HOM05D005139 ORTHO05D006125 3.5e-305 1050.8 542 100.0
MD11G1264600 Malus domestica HOM05D005139 ORTHO05D006125 5.7e-271 937.2 540 88.5
Eucgr.F01248 Eucalyptus grandis HOM05D005139 ORTHO05D006125 5.5e-266 920.6 540 82.4
Thecc.07G118200 Theobroma cacao HOM05D005139 ORTHO05D006125 1.6e-265 919.1 539 85.9
Duzib213G0634 Durio zibethinus HOM05D005139 ORTHO05D006125 2.7e-265 918.3 539 86.5
Atru.chr2.2128 Acer truncatum HOM05D005139 ORTHO05D006125 1.5e-263 912.5 539 82.7
Manes.15G095700 Manihot esculenta HOM05D005139 ORTHO05D006125 4.9e-262 907.5 539 82.6
GSVIVG01014182001 Vitis vinifera HOM05D005139 ORTHO05D006125 8.3e-262 906.7 539 86.3
CiPaw.11G159600 Carya illinoinensis HOM05D005139 ORTHO05D006125 1.8e-261 905.6 539 85.9
Actinidia12584 Actinidia chinensis HOM05D005139 ORTHO05D006125 4.1e-261 904.4 539 83.5
TWI38G1771 Tripterygium wilfordii HOM05D005139 ORTHO05D006125 4.1e-261 904.4 539 82.0
Ciclev10019589m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.3e-259 899.4 539 85.9
Potri.011G108800 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.3e-259 898.7 539 85.7
Gohir.D01G042704 Gossypium hirsutum HOM05D005139 ORTHO05D006125 5.0e-259 897.5 539 84.2
Gorai.002G053800 Gossypium raimondii HOM05D005139 ORTHO05D006125 5.0e-259 897.5 539 84.2
COL.COLO4_17530 Corchorus olitorius HOM05D005139 ORTHO05D006125 6.6e-259 897.1 539 85.0
CSS0042561 Camellia sinensis var. sinensis HOM05D005139 ORTHO05D006125 8.6e-259 896.7 539 83.3
Cfa019555 Carpinus fangiana HOM05D005139 ORTHO05D006125 1.1e-258 896.3 539 81.3
Sed0024992 Sechium edule HOM05D005139 ORTHO05D006125 1.1e-258 896.3 539 84.2
Gohir.A01G053400 Gossypium hirsutum HOM05D005139 ORTHO05D006125 1.9e-258 895.6 539 83.7
Potri.001G389300 Populus trichocarpa HOM05D005139 ORTHO05D006125 5.5e-258 894.0 539 81.4
Sopen12g006100 Solanum pennellii HOM05D005139 ORTHO05D006125 7.2e-258 893.6 539 82.9
Dinv18369 Davidia involucrata HOM05D005139 ORTHO05D006125 1.6e-257 892.5 536 82.5
CsaV3_4G030530 Cucumis sativus L. HOM05D005139 ORTHO05D006125 2.1e-257 892.1 539 80.1
Solyc12g014320.2 Solanum lycopersicum HOM05D005139 ORTHO05D006125 2.8e-257 891.7 539 82.7
MELO3C008916.2 Cucumis melo HOM05D005139 ORTHO05D006125 3.6e-257 891.3 539 80.1
Glyma.06G228700 Glycine max HOM05D005139 ORTHO05D006125 9.8e-255 883.2 539 84.4
Lj3g0013017 Lotus japonicus HOM05D005139 ORTHO05D006125 2.2e-254 882.1 540 84.6
ClCG04G002160 Citrullus lanatus HOM05D005139 ORTHO05D006125 4.9e-254 880.9 539 83.5
Phvul.011G165500 Phaseolus vulgaris HOM05D005139 ORTHO05D006125 4.9e-254 880.9 533 85.6
THA.LOC104812316 Tarenaya hassleriana HOM05D005139 ORTHO05D006125 2.4e-253 878.6 540 83.1
CAN.G443.5 Capsicum annuum HOM05D005139 ORTHO05D006125 4.1e-253 877.9 539 79.6
A07p43980 Brassica napus HOM05D005139 ORTHO05D006125 5.4e-253 877.5 540 78.9
BraA07t31905Z Brassica rapa HOM05D005139 ORTHO05D006125 5.4e-253 877.5 540 78.9
Thhalv10018370m.g Eutrema salsugineum HOM05D005139 ORTHO05D006125 7.0e-253 877.1 540 80.7
Ciclev10023690m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.6e-252 875.9 539 80.5
Sp5g33790 Schrenkiella parvula HOM05D005139 ORTHO05D006125 2.0e-252 875.5 540 81.3
BcaB03g16034 Brassica carinata HOM05D005139 ORTHO05D006125 2.7e-252 875.2 540 80.2
BcaC08g47457 Brassica carinata HOM05D005139 ORTHO05D006125 4.6e-252 874.4 540 78.7
C06p52650 Brassica napus HOM05D005139 ORTHO05D006125 4.6e-252 874.4 540 78.7
Lalb_Chr03g0031181 Lupinus albus HOM05D005139 ORTHO05D006125 1.0e-251 873.2 539 83.9
RcHm_v2.0_Chr5g0030761 Rosa chinensis HOM05D005139 ORTHO05D006125 1.3e-251 872.8 539 78.3
Psat4g140160 Pisum sativum HOM05D005139 ORTHO05D006125 1.7e-251 872.5 540 79.6
Aa31LG4G2260 Aethionema arabicum HOM05D005139 ORTHO05D006125 2.9e-251 871.7 540 81.1
AL2G39160 Arabidopsis lyrata HOM05D005139 ORTHO05D006125 2.9e-251 871.7 540 79.1
HanXRQChr11g0331031 Helianthus annuus HOM05D005139 ORTHO05D006125 5.0e-251 870.9 538 83.1
Peaxi162Scf00000g06812 Petunia axillaris HOM05D005139 ORTHO05D006125 5.0e-251 870.9 539 83.1
PSO063G5899 Papaver somniferum HOM05D005139 ORTHO05D006125 6.6e-251 870.5 534 83.1
Carub.0002s2560 Capsella rubella HOM05D005139 ORTHO05D006125 1.9e-250 869.0 540 80.2
Cc05_g10990 Coffea canephora HOM05D005139 ORTHO05D006125 1.9e-250 869.0 533 80.3
FvH4_3g18210 Fragaria vesca HOM05D005139 ORTHO05D006125 2.5e-250 868.6 539 81.6
Lsat_1_v5_gn_7_102480 Lactuca sativa HOM05D005139 ORTHO05D006125 3.3e-250 868.2 542 83.0
PSO782G2705 Papaver somniferum HOM05D005139 ORTHO05D006125 4.3e-250 867.8 534 83.0
CARHR072310 Cardamine hirsuta HOM05D005139 ORTHO05D006125 1.2e-249 866.3 539 80.5
HanXRQChr15g0495211 Helianthus annuus HOM05D005139 ORTHO05D006125 2.8e-249 865.1 538 82.5
AT1G78770 Arabidopsis thaliana HOM05D005139 ORTHO05D006125 1.4e-248 862.8 540 80.0
FAN21G0160 Fragaria x ananassa HOM05D005139 ORTHO05D006125 1.4e-248 862.8 538 81.2
Lj8A148G34 Lonicera japonica HOM05D005139 ORTHO05D006125 1.8e-248 862.4 560 79.5
Glyma.12G156300 Glycine max HOM05D005139 ORTHO05D006125 2.3e-248 862.1 539 83.1
Sabra11G0096100 Salix brachista HOM05D005139 ORTHO05D006125 2.3e-248 862.1 577 76.1
Aqoxy3G02037 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.5e-247 859.4 535 77.2
FAN16G0871 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.6e-247 858.6 539 81.3
FAN25G1917 Fragaria x ananassa HOM05D005139 ORTHO05D006125 3.4e-247 858.2 539 80.7
Aqoxy4G00276 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 9.8e-247 856.7 539 78.7
FAN11G0516 Fragaria x ananassa HOM05D005139 ORTHO05D006125 2.2e-246 855.5 539 81.1
ECA236G1068 Erigeron canadensis HOM05D005139 ORTHO05D006125 8.3e-246 853.6 574 75.6
ATR0127G028 Amborella trichopoda HOM05D005139 ORTHO05D006125 6.6e-243 844.0 534 77.7
SalBow7G0115 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.1e-242 843.2 596 71.6
SalBow7G2844 Salvia bowleyana HOM05D005139 ORTHO05D006125 1.5e-242 842.8 596 71.5
Sc03g0010570 Simmondsia chinensis HOM05D005139 ORTHO05D006125 3.6e-241 838.2 540 79.4
Migut.H02003 Erythranthe guttata HOM05D005139 ORTHO05D006125 4.7e-241 837.8 539 79.2
Medtr8g058380 Medicago truncatula HOM05D005139 ORTHO05D006125 8.1e-241 837.0 538 78.3
arahy.Tifrunner.gnm1.ann1.J0RB3X Arachis hypogaea HOM05D005139 ORTHO05D006125 4.0e-240 834.7 539 81.6
MBI06_g15765_MAGBIO Magnolia biondii HOM05D005139 ORTHO05D006125 6.8e-240 833.9 531 81.2
PGR083G0616 Punica granatum HOM05D005139 ORTHO05D006125 2.9e-238 828.6 552 75.7
EL10Ac4g08361 Beta vulgaris HOM05D005139 ORTHO05D006125 1.2e-236 823.2 599 73.1
QL08p026113 Quercus lobata HOM05D005139 ORTHO05D006125 3.3e-234 815.1 630 67.9
Prupe.4G161700 Prunus persica HOM05D005139 ORTHO05D006125 2.8e-233 812.0 550 79.1
Ah.04g164210 Amaranthus hybridus HOM05D005139 ORTHO05D006125 1.5e-231 806.2 538 75.8
Haze_09316 Corylus avellana HOM05D005139 ORTHO05D006125 1.7e-230 802.7 536 75.4
arahy.Tifrunner.gnm1.ann1.405FF9 Arachis hypogaea HOM05D005139 ORTHO05D006125 4.9e-230 801.2 540 79.4
Nitab4.5_0000035g0250 Nicotiana tabacum HOM05D005139 ORTHO05D006125 5.8e-223 777.7 540 73.1
AUR62037557 Chenopodium quinoa HOM05D005139 ORTHO05D006125 3.8e-222 775.0 545 72.1
Prupe.4G162300 Prunus persica HOM05D005139 ORTHO05D006125 5.1e-219 764.6 453 85.9
Zm00001eb399210 Zea mays HOM05D005139 ORTHO05D006125 1.1e-218 763.5 535 69.3
Os03g0236966 Oryza sativa ssp. japonica HOM05D005139 ORTHO05D006125 1.8e-216 756.1 535 70.7
Nitab4.5_0007851g0020 Nicotiana tabacum HOM05D005139 ORTHO05D006125 2.5e-210 735.7 550 69.3
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 2.8e-209 732.3 517 72.7
SGA_v2.0_scaffold130G34288 Striga asiatica HOM05D005139 ORTHO05D006125 1.7e-206 723.0 539 69.2
DCAR_013162 Daucus carota HOM05D005139 ORTHO05D006125 3.0e-195 685.6 540 69.1
SHI27616 Sapria himalayana HOM05D005139 ORTHO05D006125 1.6e-193 679.9 579 61.8
Oeu005379.1 Olea europaea HOM05D005139 ORTHO05D006125 2.1e-193 679.5 757 51.8
vmacro11947 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.0e-191 672.9 540 66.5
TAR626G0095 Trochodendron aralioides HOM05D005139 ORTHO05D006125 5.0e-190 668.3 376 86.4
Hund10469 Selenicereus undatus HOM05D005139 ORTHO05D006125 5.5e-189 664.8 400 80.2
VMungo1127G1423 Vigna mungo HOM05D005139 ORTHO05D006125 5.5e-189 664.8 377 86.5
AUR62019588 Chenopodium quinoa HOM05D005139 ORTHO05D006125 8.7e-187 657.5 540 64.3
C03p92750 Brassica napus HOM05D005139 ORTHO05D006125 5.0e-182 641.7 441 72.3
Pp3c16_8790 Physcomitrium patens HOM05D005139 ORTHO05D006125 1.8e-176 623.2 535 56.4
Mapoly0145s0019 Marchantia polymorpha HOM05D005139 ORTHO05D006125 1.2e-175 620.5 537 57.0
Ca_19229_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.3e-163 579.7 365 77.8
SMO244G0086 Selaginella moellendorffii HOM05D005139 ORTHO05D006125 5.3e-160 568.5 531 53.1
Dinv15003 Davidia involucrata HOM05D005139 ORTHO05D006125 1.3e-153 547.4 389 72.2
AagrBONN_evm.TU.Sc2ySwM_368.2003 Anthoceros agrestis HOM05D005139 ORTHO05D006125 7.0e-144 515.0 499 52.5
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 8.0e-140 501.5 490 53.7
Zm00001eb010020 Zea mays HOM05D005139 ORTHO05D006125 6.8e-139 498.4 374 65.2
SEGI_23856 Sequoiadendron giganteum HOM05D005139 ORTHO05D006125 2.6e-138 496.5 314 72.0
TPR.G5772 Trifolium pratense HOM05D005139 ORTHO05D006125 3.1e-123 446.4 268 81.7
TPR.G5739 Trifolium pratense HOM05D005139 ORTHO05D006125 1.1e-117 427.9 271 78.2
Cpa.g.sc77.24 Carica papaya HOM05D005139 ORTHO05D006125 4.4e-114 416.0 378 62.2
MD00G1077100 Malus domestica HOM05D005139 ORTHO05D006125 7.3e-109 398.7 325 67.4
MCO01G684 Micromonas commoda HOM05D005139 ORTHO05D006125 2.1e-108 397.1 626 36.9
RcHm_v2.0_Chr1g0337671 Rosa chinensis HOM05D005139 ORTHO05D006125 2.1e-103 380.6 220 82.7
RcHm_v2.0_Chr3g0469831 Rosa chinensis HOM05D005139 ORTHO05D006125 2.6e-98 363.6 272 69.1
CBR_g50377 Chara braunii HOM05D005139 ORTHO05D006125 4.2e-80 303.1 401 41.1
Potri.001G389500 Populus trichocarpa HOM05D005139 ORTHO05D006125 2.1e-71 274.2 158 83.5
Ca_28352_v3 Cicer arietinum L. HOM05D005139 ORTHO05D006125 2.8e-68 263.8 154 85.1
MD03G1275700 Malus domestica HOM05D005139 ORTHO05D006125 4.1e-67 260.0 192 71.4
Cfa023795 Carpinus fangiana HOM05D005139 ORTHO05D006125 2.9e-65 253.8 540 30.2
Ciclev10023408m.g Citrus clementina HOM05D005139 ORTHO05D006125 8.5e-65 252.3 235 58.7
HPP92_004205 Vanilla planifolia HOM05D005139 ORTHO05D006125 2.7e-63 247.3 158 74.7
HPP92_004206 Vanilla planifolia HOM05D005139 ORTHO05D006125 1.8e-62 244.6 152 76.3
BolC6t40284H Brassica oleracea HOM05D005139 ORTHO05D006125 2.6e-61 240.7 139 83.5
PRCOL_00005307 Prasinoderma coloniale HOM05D005139 ORTHO05D006125 2.2e-60 237.7 599 28.4
Cre13.g562950 Chlamydomonas reinhardtii HOM05D005139 ORTHO05D006125 1.9e-56 224.6 819 24.3
Ciclev10023736m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.1e-53 215.3 152 72.4
Ciclev10023923m.g Citrus clementina HOM05D005139 ORTHO05D006125 1.7e-52 211.5 152 71.1
VMungo1127G2083 Vigna mungo HOM05D005139 ORTHO05D006125 1.4e-51 208.4 165 65.5
CBR_g50375 Chara braunii HOM05D005139 ORTHO05D006125 1.7e-49 201.4 163 58.3
Ciclev10024516m.g Citrus clementina HOM05D005139 ORTHO05D006125 8.5e-49 199.1 239 49.4
Haze_27412 Corylus avellana HOM05D005139 ORTHO05D006125 3.6e-47 193.7 232 44.4
Aqoxy256s002 Aquilegia oxysepala HOM05D005139 ORTHO05D006125 1.4e-46 191.8 109 83.5
Cpa.g.sc77.22 Carica papaya HOM05D005139 ORTHO05D006125 4.0e-46 190.3 137 67.9
Hund10473 Selenicereus undatus HOM05D005139 ORTHO05D006125 2.0e-37 161.4 137 57.7
MD03G1275800 Malus domestica HOM05D005139 ORTHO05D006125 3.4e-37 160.6 85 94.1
Sabra16G0255500 Salix brachista HOM05D005139 ORTHO05D006125 3.7e-36 157.1 190 46.8
vmacro11946 Vaccinium macrocarpon HOM05D005139 ORTHO05D006125 2.6e-29 134.4 115 66.1
ClCG05G009350 Citrullus lanatus HOM05D005139 ORTHO05D006125 1.0e-09 69.3 53 66.0
GSVIVG01015317001 Vitis vinifera HOM05D003301 ORTHO05D003665 2.8e-07 61.2 238 21.4
Cfa011406 Carpinus fangiana HOM05D003301 ORTHO05D003665 8.1e-07 59.7 239 22.6
CiPaw.01G151200 Carya illinoinensis HOM05D003301 ORTHO05D003665 8.1e-07 59.7 239 22.2
Rhsim12G0175500 Rhododendron simsii HOM05D005139 ORTHO05D006125 5.2e-06 57.0 108 36.1


User provided reference genes

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