Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0466 Cannabis sativa HOM05D007947 ORTHO05D010018 5.6e-36 153.7 74 100.0
TPR.G15070 Trifolium pratense HOM05D007947 ORTHO05D010018 4.9e-24 114.0 74 75.7
Medtr5g098300 Medicago truncatula HOM05D007947 ORTHO05D010018 3.2e-23 111.3 76 75.0
Ca_06479_v3 Cicer arietinum L. HOM05D007947 ORTHO05D010018 1.6e-22 109.0 72 76.4
COL.COLO4_30922 Corchorus olitorius HOM05D007947 ORTHO05D010018 1.7e-21 105.5 74 70.3
Psat2g003200 Pisum sativum HOM05D007947 ORTHO05D010018 3.0e-21 104.8 74 71.6
Cfa013564 Carpinus fangiana HOM05D007947 ORTHO05D010018 5.1e-21 104.0 75 70.7
Haze_22181 Corylus avellana HOM05D007947 ORTHO05D010018 8.7e-21 103.2 75 69.3
TWI73G0356 Tripterygium wilfordii HOM05D007947 ORTHO05D010018 1.1e-20 102.8 68 77.9
Duzib192G0353 Durio zibethinus HOM05D007947 ORTHO05D010018 2.5e-20 101.7 74 70.3
LjContig00081g0013704 Lotus japonicus HOM05D007947 ORTHO05D010018 7.3e-20 100.1 72 66.7
CiPaw.10G111600 Carya illinoinensis HOM05D007947 ORTHO05D010018 9.6e-20 99.8 67 73.1
QL05p063460 Quercus lobata HOM05D007947 ORTHO05D010018 9.6e-20 99.8 66 75.8
Glyma.02G308300 Glycine max HOM05D007947 ORTHO05D010018 1.3e-19 99.4 76 67.1
Manes.03G076700 Manihot esculenta HOM05D007947 ORTHO05D010018 1.6e-19 99.0 77 67.5
Cpa.g.sc53.149 Carica papaya HOM05D007947 ORTHO05D010018 2.1e-19 98.6 64 73.4
RcHm_v2.0_Chr5g0018941 Rosa chinensis HOM05D007947 ORTHO05D010018 2.8e-19 98.2 74 63.5
Eucgr.D01574 Eucalyptus grandis HOM05D007947 ORTHO05D010018 6.2e-19 97.1 68 72.1
C07p14500 Brassica napus HOM05D007947 ORTHO05D010018 8.1e-19 96.7 74 64.9
Carub.0001s2978 Capsella rubella HOM05D007947 ORTHO05D010018 8.1e-19 96.7 74 66.2
Thhalv10009264m.g Eutrema salsugineum HOM05D007947 ORTHO05D010018 8.1e-19 96.7 74 64.9
AT1G31335 Arabidopsis thaliana HOM05D007947 ORTHO05D010018 1.1e-18 96.3 74 66.2
THA.LOC109116600 Tarenaya hassleriana HOM05D007947 ORTHO05D010018 1.1e-18 96.3 74 66.2
MELO3C011733.2 Cucumis melo HOM05D007947 ORTHO05D010018 1.4e-18 95.9 74 68.9
ClCG02G013940 Citrullus lanatus HOM05D007947 ORTHO05D010018 1.8e-18 95.5 73 61.6
BcaB03g13798 Brassica carinata HOM05D007947 ORTHO05D010018 2.4e-18 95.1 74 67.6
BolC7t41949H Brassica oleracea HOM05D007947 ORTHO05D010018 2.4e-18 95.1 74 67.6
CsaV3_5G006230 Cucumis sativus L. HOM05D007947 ORTHO05D010018 2.4e-18 95.1 74 68.9
Eucgr.E02008 Eucalyptus grandis HOM05D007947 ORTHO05D010018 2.4e-18 95.1 49 87.8
PGR142G1313 Punica granatum HOM05D007947 ORTHO05D010018 2.4e-18 95.1 66 74.2
FAN16G2050 Fragaria x ananassa HOM05D007947 ORTHO05D010018 3.1e-18 94.7 76 64.5
DCAR_007806 Daucus carota HOM05D007947 ORTHO05D010018 4.0e-18 94.4 68 72.1
Gohir.D10G048700 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.0e-18 94.4 66 71.2
Gohir.A10G047400 Gossypium hirsutum HOM05D007947 ORTHO05D010018 6.9e-18 93.6 66 71.2
TAR626G1269 Trochodendron aralioides HOM05D007947 ORTHO05D010018 9.0e-18 93.2 71 67.6
AL1G49700 Arabidopsis lyrata HOM05D007947 ORTHO05D010018 1.2e-17 92.8 64 71.9
Sp1g27170 Schrenkiella parvula HOM05D007947 ORTHO05D010018 1.2e-17 92.8 74 63.5
BraA07t28738Z Brassica rapa HOM05D007947 ORTHO05D010018 2.0e-17 92.0 76 63.2
Gorai.011G051800 Gossypium raimondii HOM05D007947 ORTHO05D010018 2.0e-17 92.0 66 69.7
FAN21G3705 Fragaria x ananassa HOM05D000217 ORTHO05D000121 2.6e-17 91.7 65 72.3
Phvul.008G288200 Phaseolus vulgaris HOM05D007947 ORTHO05D010018 3.4e-17 91.3 53 75.5
Glyma.14G004800 Glycine max HOM05D007947 ORTHO05D010018 5.8e-17 90.5 59 69.5
Gohir.D09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 5.8e-17 90.5 59 71.2
Gorai.006G091500 Gossypium raimondii HOM05D007947 ORTHO05D010018 5.8e-17 90.5 59 71.2
Prupe.4G105200 Prunus persica HOM05D007947 ORTHO05D010018 5.8e-17 90.5 74 63.5
BcaB07g32795 Brassica carinata HOM05D007947 ORTHO05D010018 7.6e-17 90.1 74 63.5
MD10G1239200 Malus domestica HOM05D007947 ORTHO05D010018 7.6e-17 90.1 75 66.7
Potri.003G148100 Populus trichocarpa HOM05D007947 ORTHO05D010018 7.6e-17 90.1 62 69.4
Potri.001G082332 Populus trichocarpa HOM05D007947 ORTHO05D010018 1.3e-16 89.4 66 68.2
BcaC05g27167 Brassica carinata HOM05D007947 ORTHO05D010018 1.7e-16 89.0 74 62.2
A09p34910 Brassica napus HOM05D007947 ORTHO05D010018 1.7e-16 89.0 74 62.2
BolC5t31792H Brassica oleracea HOM05D007947 ORTHO05D010018 1.7e-16 89.0 74 62.2
BraA09t39021Z Brassica rapa HOM05D007947 ORTHO05D010018 1.7e-16 89.0 74 62.2
C05p30570 Brassica napus HOM05D007947 ORTHO05D010018 3.8e-16 87.8 62 66.1
Nn7g37910 Nelumbo nucifera HOM05D007947 ORTHO05D010018 3.8e-16 87.8 59 74.6
Gohir.A09G076300 Gossypium hirsutum HOM05D007947 ORTHO05D010018 4.9e-16 87.4 59 69.5
Sopen02g018620 Solanum pennellii HOM05D007947 ORTHO05D010018 4.9e-16 87.4 56 66.1
arahy.Tifrunner.gnm1.ann1.F2U9KI Arachis hypogaea HOM05D001153 ORTHO05D000949 6.4e-16 87.0 46 82.6
Ciclev10017351m.g Citrus clementina HOM05D007947 ORTHO05D010018 6.4e-16 87.0 49 79.6
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 6.4e-16 87.0 51 74.5
Hma1.2p1_0326F.1_g126180 Hydrangea macrophylla HOM05D007947 ORTHO05D010018 8.4e-16 86.7 70 62.9
MD05G1260300 Malus domestica HOM05D007947 ORTHO05D010018 1.1e-15 86.3 75 64.0
PGSC0003DMG400021235 Solanum tuberosum HOM05D007947 ORTHO05D010018 1.1e-15 86.3 58 65.5
Sabra03G0107800 Salix brachista HOM05D000054 ORTHO05D000171 1.9e-15 85.5 62 66.1
CARHR030800 Cardamine hirsuta HOM05D007947 ORTHO05D010018 3.2e-15 84.7 64 65.6
Duzib235G0890 Durio zibethinus HOM05D007947 ORTHO05D010018 9.3e-15 83.2 62 66.1
Cc09_g06500 Coffea canephora HOM05D007947 ORTHO05D010018 2.1e-14 82.0 75 58.7
CSS0033410 Camellia sinensis var. sinensis HOM05D007947 ORTHO05D010018 6.0e-14 80.5 66 59.1
Lalb_Chr04g0247121 Lupinus albus HOM05D007947 ORTHO05D010018 5.1e-13 77.4 49 75.5
SalBow8G2047 Salvia bowleyana HOM05D007947 ORTHO05D010018 5.1e-13 77.4 72 52.8
Migut.M01948 Erythranthe guttata HOM05D007947 ORTHO05D010018 6.7e-13 77.0 74 54.1
Oeu030705.1 Olea europaea HOM05D007947 ORTHO05D010018 4.3e-12 74.3 68 54.4
Zm00001eb057320 Zea mays HOM05D007947 ORTHO05D010018 4.3e-12 74.3 76 52.6
Medtr5g098270 Medicago truncatula HOM05D007947 ORTHO05D010018 1.3e-11 72.8 50 64.0
Os03g0780200 Oryza sativa ssp. japonica HOM05D007947 ORTHO05D010018 2.1e-11 72.0 70 54.3
Ciclev10017780m.g Citrus clementina HOM05D007947 ORTHO05D010018 4.8e-11 70.9 40 70.0
HanXRQChr16g0528851 Helianthus annuus HOM05D007947 ORTHO05D010018 4.8e-11 70.9 62 58.1
Sc09g0004070 Simmondsia chinensis HOM05D007947 ORTHO05D010018 6.2e-11 70.5 49 69.4
Zm00001eb059730 Zea mays HOM05D007947 ORTHO05D010018 9.0e-10 66.6 71 50.7
Zm00001eb213660 Zea mays HOM05D007947 ORTHO05D010018 2.0e-09 65.5 69 49.3
Nn7g37911 Nelumbo nucifera HOM05D007947 ORTHO05D010018 2.6e-09 65.1 48 58.3
Sabra18G0012600 Salix brachista HOM05D003482 ORTHO05D010018 1.2e-06 56.2 35 77.1
Nn7g37890 Nelumbo nucifera HOM05D021221 ORTHO05D025179 3.5e-06 54.7 63 50.8
Lsat_1_v5_gn_2_106500 Lactuca sativa HOM05D007947 ORTHO05D010018 6.0e-06 53.9 55 50.9


User provided reference genes

Program Settings