Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0440 Cannabis sativa HOM05D004300 ORTHO05D005171 1.0e-191 673.3 360 100.0
CANSAT54G1622 Cannabis sativa HOM05D004300 ORTHO05D005171 4.1e-140 501.9 314 85.4
FAN25G0045 Fragaria x ananassa HOM05D004300 ORTHO05D005171 3.5e-91 339.3 316 56.3
FAN21G2148 Fragaria x ananassa HOM05D004300 ORTHO05D005171 4.6e-91 339.0 326 55.5
MD11G1000600 Malus domestica HOM05D004300 ORTHO05D005171 6.0e-91 338.6 317 58.0
Potri.001G000900 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.1e-87 326.2 307 55.0
GSVIVG01025511001 Vitis vinifera HOM05D004300 ORTHO05D005171 1.2e-86 324.3 326 54.9
Manes.03G085800 Manihot esculenta HOM05D004300 ORTHO05D005171 5.8e-86 322.0 295 55.3
Glyma.12G020500 Glycine max HOM05D004300 ORTHO05D005171 5.4e-84 315.5 318 52.2
FvH4_3g45990 Fragaria vesca HOM05D004300 ORTHO05D005171 9.2e-84 314.7 316 52.8
FAN11G3171 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.6e-83 313.9 316 52.5
FAN16G3749 Fragaria x ananassa HOM05D004300 ORTHO05D005171 1.3e-82 310.8 326 51.5
TWI34G2030 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 3.0e-82 309.7 319 52.7
TAR369G0454 Trochodendron aralioides HOM05D004300 ORTHO05D005171 1.5e-81 307.4 322 52.5
Duzib168G1574 Durio zibethinus HOM05D004300 ORTHO05D005171 4.3e-81 305.8 319 50.5
QL01p007808 Quercus lobata HOM05D004300 ORTHO05D005171 9.6e-81 304.7 295 51.9
Gorai.004G019900 Gossypium raimondii HOM05D004300 ORTHO05D005171 2.8e-80 303.1 326 50.9
Psat7g172560 Pisum sativum HOM05D004300 ORTHO05D005171 2.8e-80 303.1 317 50.8
Gohir.D08G020600 Gossypium hirsutum HOM05D004300 ORTHO05D005171 1.1e-79 301.2 326 50.6
Ca_30870_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.4e-79 300.8 315 51.4
Actinidia16226 Actinidia chinensis HOM05D004300 ORTHO05D005171 3.1e-79 299.7 329 51.4
TWI32G0643 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 4.0e-79 299.3 319 51.1
Gohir.A08G014000 Gossypium hirsutum HOM05D004300 ORTHO05D005171 5.2e-79 298.9 300 52.0
TWI36G1534 Tripterygium wilfordii HOM05D004300 ORTHO05D005171 8.9e-79 298.1 319 51.4
Eucgr.J01724 Eucalyptus grandis HOM05D004300 ORTHO05D005171 1.5e-78 297.4 321 51.7
Thecc.09G206000 Theobroma cacao HOM05D004300 ORTHO05D005171 2.0e-78 297.0 323 50.2
Ciclev10015980m.g Citrus clementina HOM05D004300 ORTHO05D005171 3.4e-78 296.2 319 50.8
CiPaw.13G179700 Carya illinoinensis HOM05D004300 ORTHO05D005171 1.7e-77 293.9 277 54.9
Phvul.011G023200 Phaseolus vulgaris HOM05D004300 ORTHO05D005171 2.9e-77 293.1 311 49.5
MBI19_g24076_MAGBIO Magnolia biondii HOM05D004300 ORTHO05D005171 8.4e-77 291.6 369 46.1
Manes.15G111100 Manihot esculenta HOM05D004300 ORTHO05D005171 8.4e-77 291.6 332 48.2
Medtr1g055160 Medicago truncatula HOM05D004300 ORTHO05D005171 8.4e-77 291.6 319 49.8
VMungo1127G0835 Vigna mungo HOM05D004300 ORTHO05D005171 1.4e-76 290.8 311 48.2
RcHm_v2.0_Chr5g0084101 Rosa chinensis HOM05D004300 ORTHO05D005171 2.4e-76 290.0 317 49.8
Prupe.6G000900 Prunus persica HOM05D004300 ORTHO05D005171 3.2e-76 289.7 320 49.7
Lj1A554T14 Lonicera japonica HOM05D004300 ORTHO05D005171 5.4e-76 288.9 278 54.0
Medtr4g076880 Medicago truncatula HOM05D004300 ORTHO05D005171 7.1e-76 288.5 320 50.0
Sabra01G0000800 Salix brachista HOM05D004300 ORTHO05D005171 2.1e-75 287.0 353 47.0
TAR623G1572 Trochodendron aralioides HOM05D004300 ORTHO05D005171 4.6e-75 285.8 322 50.9
ECA234G4359 Erigeron canadensis HOM05D004300 ORTHO05D005171 7.8e-75 285.0 316 48.4
Glyma.11G094000 Glycine max HOM05D004300 ORTHO05D005171 7.8e-75 285.0 319 48.0
arahy.Tifrunner.gnm1.ann1.S4YUBI Arachis hypogaea HOM05D004300 ORTHO05D005171 1.0e-74 284.6 315 47.9
CSS0042366 Camellia sinensis var. sinensis HOM05D004300 ORTHO05D005171 3.0e-74 283.1 268 54.5
DCAR_019963 Daucus carota HOM05D004300 ORTHO05D005171 1.9e-73 280.4 316 47.2
Rhsim09G0130300 Rhododendron simsii HOM05D004300 ORTHO05D005171 2.5e-73 280.0 313 50.2
Peaxi162Scf00186g01713 Petunia axillaris HOM05D004300 ORTHO05D005171 3.3e-73 279.6 308 50.3
Lj3g0008656 Lotus japonicus HOM05D004300 ORTHO05D005171 4.3e-73 279.3 317 46.1
Sabra02G0167600 Salix brachista HOM05D004300 ORTHO05D005171 4.3e-73 279.3 345 47.0
Cc03_g11060 Coffea canephora HOM05D004300 ORTHO05D005171 1.6e-72 277.3 316 50.3
HanXRQChr03g0088211 Helianthus annuus HOM05D004300 ORTHO05D005171 1.6e-72 277.3 317 47.6
Nitab4.5_0000075g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 2.1e-72 276.9 318 49.4
BcaC05g29181 Brassica carinata HOM05D004300 ORTHO05D005171 3.6e-72 276.2 320 47.2
C05p54490 Brassica napus HOM05D004300 ORTHO05D005171 3.6e-72 276.2 320 47.2
BolC5t34116H Brassica oleracea HOM05D004300 ORTHO05D005171 3.6e-72 276.2 320 47.2
Cpa.g.sc119.11 Carica papaya HOM05D004300 ORTHO05D005171 3.6e-72 276.2 310 50.0
AT3G13410 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 4.8e-72 275.8 319 48.3
Dinv31991 Davidia involucrata HOM05D004300 ORTHO05D005171 6.2e-72 275.4 293 52.2
AL3G25280 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-71 274.2 321 47.4
A05p36120 Brassica napus HOM05D004300 ORTHO05D005171 3.1e-71 273.1 318 47.5
BraA05t22418Z Brassica rapa HOM05D004300 ORTHO05D005171 3.1e-71 273.1 318 47.5
Thhalv10021153m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 3.1e-71 273.1 321 46.7
Aa31LG8G620 Aethionema arabicum HOM05D004300 ORTHO05D005171 4.0e-71 272.7 321 46.1
Sp3g11600 Schrenkiella parvula HOM05D004300 ORTHO05D005171 5.3e-71 272.3 328 46.0
CARHR045240 Cardamine hirsuta HOM05D004300 ORTHO05D005171 9.0e-71 271.6 321 46.7
Aa31LG10G690 Aethionema arabicum HOM05D004300 ORTHO05D005171 1.2e-70 271.2 320 48.1
BcaC09g48307 Brassica carinata HOM05D004300 ORTHO05D005171 3.4e-70 269.6 319 48.0
C01p51680 Brassica napus HOM05D004300 ORTHO05D005171 3.4e-70 269.6 319 48.0
BolC1t05112H Brassica oleracea HOM05D004300 ORTHO05D005171 3.4e-70 269.6 319 48.0
AL1G63580 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.4e-70 269.2 331 45.9
A03p38190 Brassica napus HOM05D004300 ORTHO05D005171 4.4e-70 269.2 319 47.0
BraA03t12972Z Brassica rapa HOM05D004300 ORTHO05D005171 4.4e-70 269.2 319 47.0
Sopen01g018940 Solanum pennellii HOM05D004300 ORTHO05D005171 4.4e-70 269.2 316 47.8
Sp1g41170 Schrenkiella parvula HOM05D004300 ORTHO05D005171 7.6e-70 268.5 319 48.0
BraA01t04057Z Brassica rapa HOM05D004300 ORTHO05D005171 9.9e-70 268.1 317 48.6
PSO339G2659 Papaver somniferum HOM05D004300 ORTHO05D005171 9.9e-70 268.1 319 47.0
Solyc01g049890.3 Solanum lycopersicum HOM05D004300 ORTHO05D005171 9.9e-70 268.1 316 47.8
EL10Ac2g04496 Beta vulgaris HOM05D004300 ORTHO05D005171 1.3e-69 267.7 316 47.8
A01p40190 Brassica napus HOM05D004300 ORTHO05D005171 1.7e-69 267.3 317 47.9
CARHR088020 Cardamine hirsuta HOM05D004300 ORTHO05D005171 2.2e-69 266.9 321 46.1
BcaB04g18758 Brassica carinata HOM05D004300 ORTHO05D005171 2.9e-69 266.5 334 44.3
BcaC01g03994 Brassica carinata HOM05D004300 ORTHO05D005171 3.8e-69 266.2 331 45.0
BolC3t16904H Brassica oleracea HOM05D004300 ORTHO05D005171 3.8e-69 266.2 331 45.0
Sed0000768 Sechium edule HOM05D004300 ORTHO05D005171 6.4e-69 265.4 321 45.5
C03p46350 Brassica napus HOM05D004300 ORTHO05D005171 8.4e-69 265.0 331 45.0
COL.COLO4_35065 Corchorus olitorius HOM05D004300 ORTHO05D005171 1.4e-68 264.2 288 49.3
PGR119G1781 Punica granatum HOM05D004300 ORTHO05D005171 1.9e-68 263.8 314 46.8
Nn7g35788 Nelumbo nucifera HOM05D004300 ORTHO05D005171 2.4e-68 263.5 317 45.4
SalBow2G2450 Salvia bowleyana HOM05D004300 ORTHO05D005171 3.2e-68 263.1 324 46.3
THA.LOC104816065 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 3.2e-68 263.1 321 47.4
THA.LOC104822689 Tarenaya hassleriana HOM05D004300 ORTHO05D005171 4.2e-68 262.7 321 46.7
Carub.0001s4406 Capsella rubella HOM05D004300 ORTHO05D005171 1.2e-67 261.2 321 45.5
Sed0018013 Sechium edule HOM05D004300 ORTHO05D005171 1.2e-67 261.2 320 46.2
Carub.0003s1278 Capsella rubella HOM05D004300 ORTHO05D005171 1.6e-67 260.8 322 46.0
SGA_v2.0_scaffold3G01707 Striga asiatica HOM05D004300 ORTHO05D005171 1.6e-67 260.8 320 48.1
PSO384G2337 Papaver somniferum HOM05D004300 ORTHO05D005171 2.7e-67 260.0 319 46.1
arahy.Tifrunner.gnm1.ann1.C8XIPM Arachis hypogaea HOM05D004300 ORTHO05D005171 6.0e-67 258.8 315 44.1
Lalb_Chr01g0001071 Lupinus albus HOM05D004300 ORTHO05D005171 6.0e-67 258.8 306 45.8
Sc14g0004840 Simmondsia chinensis HOM05D004300 ORTHO05D005171 7.9e-67 258.5 301 46.2
AUR62023250 Chenopodium quinoa HOM05D004300 ORTHO05D005171 1.0e-66 258.1 316 45.3
BcaB04g21013 Brassica carinata HOM05D004300 ORTHO05D005171 1.3e-66 257.7 321 45.8
Cfa009526 Carpinus fangiana HOM05D004300 ORTHO05D005171 1.3e-66 257.7 303 46.9
Hund16197 Selenicereus undatus HOM05D004300 ORTHO05D005171 1.7e-66 257.3 260 50.4
MELO3C019973.2 Cucumis melo HOM05D004300 ORTHO05D005171 3.9e-66 256.1 327 44.3
MSTRG.20930 Avicennia marina HOM05D004300 ORTHO05D005171 5.1e-66 255.8 320 45.0
Haze_22917 Corylus avellana HOM05D004300 ORTHO05D005171 5.1e-66 255.8 304 46.4
CsaV3_6G004960 Cucumis sativus L. HOM05D004300 ORTHO05D005171 8.7e-66 255.0 327 44.0
Sabra03G0048200 Salix brachista HOM05D004300 ORTHO05D005171 2.5e-65 253.4 400 40.0
SGA_v2.0_scaffold6G03345 Striga asiatica HOM05D004300 ORTHO05D005171 5.6e-65 252.3 321 46.4
Lsat_1_v5_gn_4_42220 Lactuca sativa HOM05D004300 ORTHO05D005171 7.3e-65 251.9 316 46.2
CAN.G40.2 Capsicum annuum HOM05D004300 ORTHO05D005171 1.6e-64 250.8 317 46.1
Atru.chr3.2054 Acer truncatum HOM05D004300 ORTHO05D005171 2.1e-64 250.4 297 45.5
Migut.D02580 Erythranthe guttata HOM05D004300 ORTHO05D005171 2.8e-64 250.0 320 44.4
Ah.10g037910 Amaranthus hybridus HOM05D004300 ORTHO05D005171 4.8e-64 249.2 317 45.7
ATR0068G043 Amborella trichopoda HOM05D004300 ORTHO05D005171 1.1e-63 248.1 323 43.7
Lalb_Chr19g0139761 Lupinus albus HOM05D004300 ORTHO05D005171 1.8e-63 247.3 315 42.5
PGSC0003DMG400021083 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.8e-63 247.3 255 51.0
ClCG08G007290 Citrullus lanatus HOM05D004300 ORTHO05D005171 2.4e-63 246.9 324 44.1
Nn2g15910 Nelumbo nucifera HOM05D004300 ORTHO05D005171 6.9e-63 245.4 289 46.4
Ca_18976_v3 Cicer arietinum L. HOM05D004300 ORTHO05D005171 1.2e-62 244.6 284 47.5
PGSC0003DMG400031504 Solanum tuberosum HOM05D004300 ORTHO05D005171 1.5e-62 244.2 255 50.2
MSTRG.18890 Avicennia marina HOM05D004300 ORTHO05D005171 4.5e-62 242.7 315 41.9
CDE11G0372 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 1.7e-61 240.7 320 44.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 4.9e-61 239.2 330 42.4
Potri.003G223601 Populus trichocarpa HOM05D004300 ORTHO05D005171 4.9e-61 239.2 253 49.4
ClCG10G005160 Citrullus lanatus HOM05D004300 ORTHO05D005171 1.1e-60 238.0 330 41.8
vmacro04045 Vaccinium macrocarpon HOM05D004300 ORTHO05D005171 1.1e-60 238.0 414 39.1
CDE02G0988 Ceratophyllum demersum HOM05D004300 ORTHO05D005171 5.5e-60 235.7 318 44.0
Zm00001eb195780 Zea mays HOM05D004300 ORTHO05D005171 1.1e-57 228.0 324 41.7
HPP92_021175 Vanilla planifolia HOM05D004300 ORTHO05D005171 7.4e-57 225.3 317 40.1
unitig_22.g5956 Utricularia gibba HOM05D004300 ORTHO05D005171 4.8e-56 222.6 321 42.4
Zm00001eb093640 Zea mays HOM05D004300 ORTHO05D005171 9.0e-55 218.4 320 38.8
Os11g0127700 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 1.7e-53 214.2 321 39.3
Os12g0123900 Oryza sativa ssp. japonica HOM05D004300 ORTHO05D005171 2.9e-53 213.4 319 38.9
Duzib150G1501 Durio zibethinus HOM05D004300 ORTHO05D005171 1.9e-49 200.7 318 41.5
TPR.G3681 Trifolium pratense HOM05D004300 ORTHO05D005171 4.3e-49 199.5 205 49.3
MD03G1001400 Malus domestica HOM05D004300 ORTHO05D005171 7.4e-49 198.7 222 49.1
Thhalv10011977m.g Eutrema salsugineum HOM05D004300 ORTHO05D005171 1.5e-41 174.5 208 48.6
SEGI_28087 Sequoiadendron giganteum HOM05D004300 ORTHO05D005171 2.8e-40 170.2 245 34.7
RcHm_v2.0_Chr4g0398051 Rosa chinensis HOM05D004300 ORTHO05D005171 7.2e-36 155.6 162 49.4
RcHm_v2.0_Chr7g0192441 Rosa chinensis HOM05D004300 ORTHO05D005171 1.5e-33 147.9 168 47.6
Mapoly0001s0434 Marchantia polymorpha HOM05D004300 ORTHO05D005171 3.3e-33 146.7 316 33.5
Pp3c1_26860 Physcomitrium patens HOM05D004300 ORTHO05D005171 1.2e-30 138.3 315 31.1
Nitab4.5_0000890g0150 Nicotiana tabacum HOM05D004300 ORTHO05D005171 6.5e-29 132.5 164 47.0
SMO134G0100 Selaginella moellendorffii HOM05D004300 ORTHO05D005171 5.5e-28 129.4 308 32.8
Pp3c14_9560 Physcomitrium patens HOM05D004300 ORTHO05D005171 3.0e-26 123.6 317 29.0
AL1G23250 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 1.4e-23 114.8 133 42.9
AL5G32130 Arabidopsis lyrata HOM05D004300 ORTHO05D005171 4.1e-23 113.2 133 42.1
AUR62023204 Chenopodium quinoa HOM05D004300 ORTHO05D005171 7.0e-23 112.5 191 37.2
Potri.008G223987 Populus trichocarpa HOM05D004300 ORTHO05D005171 3.6e-19 100.1 114 43.9
Potri.012G124888 Populus trichocarpa HOM05D004300 ORTHO05D005171 2.2e-16 90.9 87 47.1
FAN02G4318 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.4e-15 87.4 88 51.1
FAN17G1476 Fragaria x ananassa HOM05D004300 ORTHO05D005171 2.4e-15 87.4 88 51.1
AT1G55546 Arabidopsis thaliana HOM05D004300 ORTHO05D005171 1.6e-14 84.7 107 43.9
FAN20G0894 Fragaria x ananassa HOM05D004300 ORTHO05D005171 5.9e-14 82.8 98 46.9
Zm00001eb363780 Zea mays HOM05D004300 ORTHO05D005171 1.4e-10 71.6 66 43.9
Zm00001eb387380 Zea mays HOM05D004300 ORTHO05D005171 1.4e-10 71.6 66 43.9
Zm00001eb043250 Zea mays HOM05D004300 ORTHO05D005171 1.8e-10 71.2 99 34.3
Zm00001eb080660 Zea mays HOM05D004300 ORTHO05D005171 5.7e-09 66.2 156 28.8
Actinidia00920 Actinidia chinensis HOM05D004300 ORTHO05D038087 2.2e-08 64.3 135 35.6
RcHm_v2.0_Chr7g0231521 Rosa chinensis HOM05D005603 ORTHO05D006944 3.7e-08 63.5 79 39.2


User provided reference genes

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