Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0405 Cannabis sativa HOM05D008293 ORTHO05D010504 1.2e-272 942.6 478 100.0
Prupe.4G167100 Prunus persica HOM05D008293 ORTHO05D010504 3.5e-171 605.5 471 68.6
Dinv14981 Davidia involucrata HOM05D008293 ORTHO05D010504 1.2e-168 597.0 473 66.2
QL08p026533 Quercus lobata HOM05D008293 ORTHO05D010504 6.8e-167 591.3 471 65.8
GSVIVG01014211001 Vitis vinifera HOM05D008293 ORTHO05D010504 1.2e-166 590.5 444 68.9
CSS0000482 Camellia sinensis var. sinensis HOM05D008293 ORTHO05D010504 1.5e-166 590.1 467 66.6
Actinidia18798 Actinidia chinensis HOM05D008293 ORTHO05D010504 2.4e-164 582.8 460 68.0
MD03G1241800 Malus domestica HOM05D008293 ORTHO05D010504 5.4e-164 581.6 460 67.4
Hma1.2p1_2505F.1_g323420 Hydrangea macrophylla HOM05D008293 ORTHO05D010504 6.6e-162 574.7 428 68.0
Rhsim04G0025400 Rhododendron simsii HOM05D008293 ORTHO05D010504 8.6e-162 574.3 466 65.5
Thecc.07G109900 Theobroma cacao HOM05D008293 ORTHO05D010504 5.6e-161 571.6 467 66.4
Atru.chr2.2164 Acer truncatum HOM05D008293 ORTHO05D010504 8.0e-160 567.8 428 68.9
COL.COLO4_24863 Corchorus olitorius HOM05D008293 ORTHO05D010504 1.0e-159 567.4 472 65.7
TAR627G0720 Trochodendron aralioides HOM05D008293 ORTHO05D010504 1.4e-159 567.0 470 63.2
Gohir.A13G148900 Gossypium hirsutum HOM05D008293 ORTHO05D010504 6.6e-154 548.1 460 63.9
Nitab4.5_0000246g0170 Nicotiana tabacum HOM05D008293 ORTHO05D010504 4.3e-153 545.4 470 61.7
Gohir.D13G153400 Gossypium hirsutum HOM05D008293 ORTHO05D010504 1.6e-152 543.5 422 67.5
Nitab4.5_0001145g0060 Nicotiana tabacum HOM05D008293 ORTHO05D010504 4.7e-152 542.0 437 64.5
Haze_09337 Corylus avellana HOM05D008293 ORTHO05D010504 8.1e-152 541.2 438 65.8
Gorai.013G173300 Gossypium raimondii HOM05D008293 ORTHO05D010504 1.8e-151 540.0 424 67.5
Peaxi162Scf00069g02232 Petunia axillaris HOM05D008293 ORTHO05D010504 5.2e-151 538.5 454 62.3
PGSC0003DMG400012428 Solanum tuberosum HOM05D008293 ORTHO05D010504 2.6e-150 536.2 428 64.3
CAN.G162.9 Capsicum annuum HOM05D008293 ORTHO05D010504 4.4e-150 535.4 441 63.7
PGR083G2613 Punica granatum HOM05D008293 ORTHO05D010504 2.2e-149 533.1 430 64.2
Migut.M00735 Erythranthe guttata HOM05D008293 ORTHO05D010504 3.7e-149 532.3 435 64.4
Sopen07g030780 Solanum pennellii HOM05D008293 ORTHO05D010504 3.7e-149 532.3 446 62.6
Aqoxy4G00368 Aquilegia oxysepala HOM05D008293 ORTHO05D010504 1.9e-148 530.0 472 60.0
PSO782G2569 Papaver somniferum HOM05D008293 ORTHO05D010504 1.9e-145 520.0 448 61.6
Ciclev10020583m.g Citrus clementina HOM05D008293 ORTHO05D010504 5.2e-135 485.3 383 66.3
AagrBONN_evm.TU.Sc2ySwM_344.4932 Anthoceros agrestis HOM05D008293 ORTHO05D010504 1.9e-129 466.8 474 54.2
Nn1g09105 Nelumbo nucifera HOM05D008293 ORTHO05D010504 1.4e-127 460.7 430 57.4
HPP92_024759 Vanilla planifolia HOM05D008293 ORTHO05D010504 1.5e-126 457.2 435 57.2
Cc05_g11210 Coffea canephora HOM05D008293 ORTHO05D010504 1.9e-124 450.3 374 62.3
Pp3c22_22050 Physcomitrium patens HOM05D008293 ORTHO05D010504 5.6e-121 438.7 470 51.9
Mapoly0032s0102 Marchantia polymorpha HOM05D008293 ORTHO05D010504 6.2e-120 435.3 473 51.6
Pp3c19_10600 Physcomitrium patens HOM05D008293 ORTHO05D010504 3.1e-119 433.0 461 51.2
SGA_v2.0_scaffold55G19705 Striga asiatica HOM05D008293 ORTHO05D010504 9.0e-119 431.4 443 55.5
Solyc07g062543.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 9.9e-118 427.9 344 62.8
RcHm_v2.0_Chr5g0030831 Rosa chinensis HOM05D008293 ORTHO05D010504 1.2e-115 421.0 340 65.0
SMO118G0404 Selaginella moellendorffii HOM05D008293 ORTHO05D010504 2.1e-115 420.2 454 52.2
Ciclev10023335m.g Citrus clementina HOM05D008293 ORTHO05D010504 1.1e-105 387.9 412 53.6
Lj1A831T70 Lonicera japonica HOM05D008293 ORTHO05D010504 4.6e-91 339.3 261 67.8
RcHm_v2.0_Chr5g0031211 Rosa chinensis HOM05D008293 ORTHO05D010504 7.9e-91 338.6 340 57.1
PRCOL_00003950 Prasinoderma coloniale HOM05D008293 ORTHO05D010504 3.3e-89 333.2 440 43.9
CBR_g40882 Chara braunii HOM05D008293 ORTHO05D010504 7.4e-89 332.0 427 45.2
SEGI_20639 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 3.9e-82 309.7 290 56.9
Cpa.g.sc97.100 Carica papaya HOM05D008293 ORTHO05D010504 4.7e-75 286.2 205 69.3
RcHm_v2.0_Chr7g0194341 Rosa chinensis HOM05D008293 ORTHO05D010504 2.5e-68 263.8 238 63.9
RcHm_v2.0_Chr5g0031411 Rosa chinensis HOM05D008293 ORTHO05D010504 9.1e-63 245.4 221 61.5
Atru.chr2.2165 Acer truncatum HOM05D003516 ORTHO05D004068 2.4e-55 220.7 187 64.7
Ca_29004_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 4.4e-49 199.9 243 46.9
Cfa019577 Carpinus fangiana HOM05D008293 ORTHO05D010504 2.0e-46 191.0 175 60.0
Lj1P831T51 Lonicera japonica HOM05D008293 ORTHO05D010504 2.0e-46 191.0 178 59.6
Solyc07g062547.1 Solanum lycopersicum HOM05D008293 ORTHO05D010504 2.5e-44 184.1 160 60.6
MD10G1199100 Malus domestica HOM05D008293 ORTHO05D010504 1.2e-38 165.2 172 52.9
AagrBONN_evm.TU.Sc2ySwM_344.893 Anthoceros agrestis HOM05D008293 ORTHO05D010504 9.5e-36 155.6 143 57.3
SEGI_30761 Sequoiadendron giganteum HOM05D008293 ORTHO05D010504 3.3e-28 130.6 139 48.2
Actinidia35215 Actinidia chinensis HOM05D008293 ORTHO05D010504 7.6e-25 119.4 290 34.8
Ca_29048_v3 Cicer arietinum L. HOM05D008293 ORTHO05D010504 5.4e-15 86.7 101 41.6
RcHm_v2.0_Chr5g0030641 Rosa chinensis HOM05D008293 ORTHO05D010504 3.6e-11 73.9 67 56.7
SEGI_40959 Sequoiadendron giganteum HOM05D008293 ORTHO05D386060 2.9e-08 64.3 72 45.8
Sopen06g001050 Solanum pennellii HOM05D008293 ORTHO05D023155 1.1e-07 62.4 85 48.2
DCAR_008553 Daucus carota HOM05D003566 ORTHO05D005288 2.4e-07 61.2 388 24.5
Zm00001eb378020 Zea mays HOM05D003566 ORTHO05D005288 2.4e-07 61.2 397 23.7
AL1G55650 Arabidopsis lyrata HOM05D003566 ORTHO05D005288 3.2e-07 60.8 390 23.8
ATR0757G160 Amborella trichopoda HOM05D003566 ORTHO05D005288 4.2e-07 60.5 384 23.7
AT1G48860 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 5.4e-07 60.1 390 24.1
Manes.05G046900 Manihot esculenta HOM05D003566 ORTHO05D005288 5.4e-07 60.1 389 24.4
Lalb_Chr07g0189911 Lupinus albus HOM05D003566 ORTHO05D005288 7.1e-07 59.7 379 23.7
CARHR140500 Cardamine hirsuta HOM05D003566 ORTHO05D005288 9.3e-07 59.3 390 23.8
Eucgr.D02465 Eucalyptus grandis HOM05D003566 ORTHO05D005288 9.3e-07 59.3 389 23.9
Manes.01G266800 Manihot esculenta HOM05D003566 ORTHO05D005288 9.3e-07 59.3 392 23.7
Nn1g01139 Nelumbo nucifera HOM05D003566 ORTHO05D005288 1.6e-06 58.5 395 24.3
AT2G45300 Arabidopsis thaliana HOM05D003566 ORTHO05D005288 2.1e-06 58.2 390 23.3
A03p25160 Brassica napus HOM05D003566 ORTHO05D005288 2.7e-06 57.8 390 23.8
HanXRQChr16g0520001 Helianthus annuus HOM05D003566 ORTHO05D005288 2.7e-06 57.8 284 27.1
Lalb_Chr12g0208181 Lupinus albus HOM05D003566 ORTHO05D005288 2.7e-06 57.8 377 23.6
Cfa001747 Carpinus fangiana HOM05D003566 ORTHO05D005288 3.5e-06 57.4 394 23.6
AUR62013650 Chenopodium quinoa HOM05D003566 ORTHO05D005288 3.5e-06 57.4 403 23.3
Sp5g02490 Schrenkiella parvula HOM05D003566 ORTHO05D005288 3.5e-06 57.4 390 24.4
Aqoxy7G00661 Aquilegia oxysepala HOM05D003566 ORTHO05D005288 4.6e-06 57.0 462 23.6
MSTRG.4899 Avicennia marina HOM05D003566 ORTHO05D005288 6.0e-06 56.6 462 23.8
CSS0046086 Camellia sinensis var. sinensis HOM05D003566 ORTHO05D005288 6.0e-06 56.6 377 24.7
GSVIVG01027670001 Vitis vinifera HOM05D003566 ORTHO05D005288 6.0e-06 56.6 400 23.5
AUR62004195 Chenopodium quinoa HOM05D003566 ORTHO05D005288 7.9e-06 56.2 396 23.7


User provided reference genes

Program Settings