Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0012 Cannabis sativa HOM05D005187 ORTHO05D006321 2.1e-255 885.2 440 100.0
CANSAT35G0393 Cannabis sativa HOM05D005187 ORTHO05D006321 2.1e-255 885.2 440 100.0
QL11p018233 Quercus lobata HOM05D005187 ORTHO05D006321 1.6e-175 619.8 446 70.0
Cfa000731 Carpinus fangiana HOM05D005187 ORTHO05D006321 7.6e-173 610.9 447 68.9
FvH4_3g11981 Fragaria vesca HOM05D005187 ORTHO05D006321 7.6e-173 610.9 446 68.6
Dinv11863 Davidia involucrata HOM05D005187 ORTHO05D006321 9.9e-173 610.5 447 67.1
Prupe.4G108200 Prunus persica HOM05D005187 ORTHO05D006321 6.4e-172 607.8 448 67.6
MD10G1236200 Malus domestica HOM05D005187 ORTHO05D006321 8.4e-172 607.4 448 68.5
RcHm_v2.0_Chr5g0019591 Rosa chinensis HOM05D005187 ORTHO05D006321 5.5e-171 604.7 446 67.9
CSS0000605 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.3e-169 600.1 440 68.6
FAN21G3332 Fragaria x ananassa HOM05D005187 ORTHO05D006321 5.1e-169 598.2 446 67.5
CSS0021692 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.9e-168 596.3 440 67.3
MD05G1256000 Malus domestica HOM05D005187 ORTHO05D006321 1.9e-168 596.3 448 66.3
Eucgr.H03600 Eucalyptus grandis HOM05D005187 ORTHO05D006321 5.6e-168 594.7 447 65.3
FAN25G0172 Fragaria x ananassa HOM05D005187 ORTHO05D006321 1.6e-167 593.2 446 66.6
Potri.012G118800 Populus trichocarpa HOM05D005187 ORTHO05D006321 4.8e-167 591.7 447 66.7
Actinidia22378 Actinidia chinensis HOM05D005187 ORTHO05D006321 8.2e-167 590.9 440 67.5
Potri.015G117500 Populus trichocarpa HOM05D005187 ORTHO05D006321 1.4e-166 590.1 447 66.9
Ciclev10015216m.g Citrus clementina HOM05D005187 ORTHO05D006321 3.1e-166 589.0 448 66.5
Thecc.06G138700 Theobroma cacao HOM05D005187 ORTHO05D006321 4.0e-166 588.6 447 66.7
Sabra12G0089800 Salix brachista HOM05D005187 ORTHO05D006321 9.0e-166 587.4 447 65.8
CiPaw.09G079400 Carya illinoinensis HOM05D005187 ORTHO05D006321 1.5e-165 586.6 436 68.1
TAR626G1727 Trochodendron aralioides HOM05D005187 ORTHO05D006321 2.0e-165 586.3 447 65.5
Sed0009778 Sechium edule HOM05D005187 ORTHO05D006321 7.6e-165 584.3 439 66.1
Duzib235G1525 Durio zibethinus HOM05D005187 ORTHO05D006321 3.8e-164 582.0 442 67.2
Rhsim13G0129800 Rhododendron simsii HOM05D005187 ORTHO05D006321 8.4e-164 580.9 429 66.7
TWI63G0482 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 2.5e-163 579.3 446 64.1
Duzib160G0034 Durio zibethinus HOM05D005187 ORTHO05D006321 4.2e-163 578.6 447 65.5
Atru.chr10.600 Acer truncatum HOM05D005187 ORTHO05D006321 3.5e-162 575.5 381 73.2
COL.COLO4_30954 Corchorus olitorius HOM05D005187 ORTHO05D006321 3.5e-162 575.5 447 64.7
Phvul.006G131800 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 3.0e-161 572.4 439 65.1
ClCG01G009120 Citrullus lanatus HOM05D005187 ORTHO05D006321 3.9e-161 572.0 437 66.4
Manes.16G047945 Manihot esculenta HOM05D005187 ORTHO05D006321 2.5e-160 569.3 438 66.4
Gohir.D05G146700 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.3e-159 567.0 449 63.5
PSO541G0052 Papaver somniferum HOM05D005187 ORTHO05D006321 2.8e-159 565.8 456 63.2
TWI38G0211 Tripterygium wilfordii HOM05D005187 ORTHO05D006321 3.7e-159 565.5 448 63.6
Gohir.D06G145500 Gossypium hirsutum HOM05D005187 ORTHO05D006321 1.1e-158 563.9 443 64.6
CSS0025112 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 1.8e-158 563.1 440 65.7
Gorai.010G169400 Gossypium raimondii HOM05D005187 ORTHO05D006321 3.1e-158 562.4 443 64.6
Sed0019284 Sechium edule HOM05D005187 ORTHO05D006321 3.1e-158 562.4 439 64.5
PGR083G0195 Punica granatum HOM05D005187 ORTHO05D006321 4.1e-158 562.0 431 63.6
arahy.Tifrunner.gnm1.ann1.U4TTSR Arachis hypogaea HOM05D005187 ORTHO05D006321 5.3e-158 561.6 433 66.1
Oeu052680.1 Olea europaea HOM05D005187 ORTHO05D006321 5.3e-158 561.6 442 63.6
Gorai.009G150500 Gossypium raimondii HOM05D005187 ORTHO05D006321 6.9e-158 561.2 449 62.8
arahy.Tifrunner.gnm1.ann1.A8J5UB Arachis hypogaea HOM05D005187 ORTHO05D006321 2.0e-157 559.7 433 66.1
PGSC0003DMG401021153 Solanum tuberosum HOM05D005187 ORTHO05D006321 2.0e-157 559.7 440 64.3
CsaV3_1G046490 Cucumis sativus L. HOM05D005187 ORTHO05D006321 4.5e-157 558.5 435 64.8
Gohir.A06G141720 Gossypium hirsutum HOM05D005187 ORTHO05D006321 4.5e-157 558.5 442 63.8
Cc01_g03360 Coffea canephora HOM05D005187 ORTHO05D006321 5.9e-157 558.1 447 62.4
MELO3C021805.2 Cucumis melo HOM05D005187 ORTHO05D006321 1.3e-156 557.0 417 66.9
CAN.G1202.10 Capsicum annuum HOM05D005187 ORTHO05D006321 2.9e-156 555.8 440 63.2
Oeu060339.1 Olea europaea HOM05D005187 ORTHO05D006321 3.8e-156 555.4 429 63.6
Nitab4.5_0007051g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 3.2e-155 552.4 440 63.2
Glyma.15G126600 Glycine max HOM05D005187 ORTHO05D006321 4.2e-155 552.0 441 63.5
Solyc02g069240.1 Solanum lycopersicum HOM05D005187 ORTHO05D006321 4.2e-155 552.0 440 63.2
VMungo0540G1318 Vigna mungo HOM05D005187 ORTHO05D006321 5.5e-155 551.6 439 62.2
Glyma.07G223400 Glycine max HOM05D005187 ORTHO05D006321 7.2e-155 551.2 435 63.7
Sopen02g018400 Solanum pennellii HOM05D005187 ORTHO05D006321 1.2e-154 550.4 440 63.0
Lj6g0012614 Lotus japonicus HOM05D005187 ORTHO05D006321 1.6e-154 550.1 437 63.2
Glyma.09G020100 Glycine max HOM05D005187 ORTHO05D006321 2.1e-154 549.7 440 62.3
Ca_18778_v3 Cicer arietinum L. HOM05D005187 ORTHO05D006321 2.7e-154 549.3 429 63.9
Lalb_Chr05g0219781 Lupinus albus HOM05D005187 ORTHO05D006321 2.7e-154 549.3 415 65.1
Nitab4.5_0003027g0010 Nicotiana tabacum HOM05D005187 ORTHO05D006321 1.0e-153 547.4 441 63.7
Glyma.20G022800 Glycine max HOM05D005187 ORTHO05D006321 3.0e-153 545.8 438 64.2
Sc26g0001200 Simmondsia chinensis HOM05D005187 ORTHO05D006321 3.0e-153 545.8 426 65.0
Peaxi162Scf00623g00041 Petunia axillaris HOM05D005187 ORTHO05D006321 5.1e-153 545.0 443 63.0
THA.LOC104812708 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.5e-152 542.7 454 61.2
MSTRG.16334 Avicennia marina HOM05D005187 ORTHO05D006321 4.3e-152 542.0 444 61.0
Aqoxy3G04273 Aquilegia oxysepala HOM05D005187 ORTHO05D006321 7.4e-152 541.2 449 60.4
Lj4g0026916 Lotus japonicus HOM05D005187 ORTHO05D006321 2.8e-151 539.3 427 64.4
Psat1g169920 Pisum sativum HOM05D005187 ORTHO05D006321 1.4e-150 537.0 432 62.5
MSTRG.14817 Avicennia marina HOM05D005187 ORTHO05D006321 9.1e-150 534.3 433 61.9
Medtr4g083590 Medicago truncatula HOM05D005187 ORTHO05D006321 2.6e-149 532.7 439 62.2
Ah.04g166250 Amaranthus hybridus HOM05D005187 ORTHO05D006321 3.4e-149 532.3 433 62.1
AL3G15760 Arabidopsis lyrata HOM05D005187 ORTHO05D006321 7.7e-149 531.2 448 61.8
AT3G05320 Arabidopsis thaliana HOM05D005187 ORTHO05D006321 6.5e-148 528.1 437 63.2
DCAR_003796 Daucus carota HOM05D005187 ORTHO05D006321 1.1e-147 527.3 447 59.7
VMungo0540G1732 Vigna mungo HOM05D005187 ORTHO05D006321 1.1e-147 527.3 438 61.2
Thhalv10020752m.g Eutrema salsugineum HOM05D005187 ORTHO05D006321 1.4e-147 526.9 450 62.9
CARHR079660 Cardamine hirsuta HOM05D005187 ORTHO05D006321 7.2e-147 524.6 444 63.3
TPR.G34067 Trifolium pratense HOM05D005187 ORTHO05D006321 1.6e-146 523.5 375 68.0
Lalb_Chr16g0385341 Lupinus albus HOM05D005187 ORTHO05D006321 6.1e-146 521.5 429 62.5
Medtr2g028900 Medicago truncatula HOM05D005187 ORTHO05D006321 6.1e-146 521.5 437 60.6
BolC5t34850H Brassica oleracea HOM05D005187 ORTHO05D006321 1.0e-145 520.8 442 62.4
Carub.0003s0459 Capsella rubella HOM05D005187 ORTHO05D006321 1.8e-145 520.0 438 61.9
Sp3g04180 Schrenkiella parvula HOM05D005187 ORTHO05D006321 3.9e-145 518.8 448 61.6
ATR0763G140 Amborella trichopoda HOM05D005187 ORTHO05D006321 8.8e-145 517.7 438 61.0
Sabra15G0135700 Salix brachista HOM05D005187 ORTHO05D006321 8.8e-145 517.7 400 65.2
Aa31LG9G15990 Aethionema arabicum HOM05D005187 ORTHO05D006321 1.1e-144 517.3 430 61.4
BNapus_Darmor_BZH_scaffold_114p00200 Brassica napus HOM05D005187 ORTHO05D006321 1.1e-144 517.3 443 61.6
BcaC05g30018 Brassica carinata HOM05D005187 ORTHO05D006321 2.0e-144 516.5 442 62.2
BcaC05g30138 Brassica carinata HOM05D005187 ORTHO05D006321 2.0e-144 516.5 442 61.3
C05p61900 Brassica napus HOM05D005187 ORTHO05D006321 2.0e-144 516.5 442 62.2
THA.LOC104798549 Tarenaya hassleriana HOM05D005187 ORTHO05D006321 2.0e-144 516.5 453 59.8
SGA_v2.0_scaffold298G47667 Striga asiatica HOM05D005187 ORTHO05D006321 3.3e-144 515.8 443 58.9
SHI14074 Sapria himalayana HOM05D005187 ORTHO05D006321 4.4e-144 515.4 428 60.7
HanXRQChr05g0161551 Helianthus annuus HOM05D005187 ORTHO05D006321 9.7e-144 514.2 428 60.0
Gorai.011G050000 Gossypium raimondii HOM05D005187 ORTHO05D006321 1.7e-143 513.5 443 60.5
BraA05t23022Z Brassica rapa HOM05D005187 ORTHO05D006321 2.8e-143 512.7 442 61.3
BraSC132t45512Z Brassica rapa HOM05D005187 ORTHO05D006321 1.1e-142 510.8 442 61.8
Gohir.D10G046900 Gossypium hirsutum HOM05D005187 ORTHO05D006321 3.1e-142 509.2 443 60.0
BolC1t05702H Brassica oleracea HOM05D005187 ORTHO05D006321 1.5e-141 506.9 431 61.9
Lsat_1_v5_gn_9_40501 Lactuca sativa HOM05D005187 ORTHO05D006321 3.5e-141 505.8 439 59.5
HanXRQChr05g0161561 Helianthus annuus HOM05D005187 ORTHO05D006321 4.5e-141 505.4 368 66.3
unitig_32.g11673 Utricularia gibba HOM05D005187 ORTHO05D006321 1.0e-140 504.2 433 58.9
HanXRQChr11g0320061 Helianthus annuus HOM05D005187 ORTHO05D006321 4.2e-139 498.8 426 59.9
Lj6g0019424 Lotus japonicus HOM05D005187 ORTHO05D006321 7.2e-139 498.0 437 58.8
CSS0003379 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.4e-139 497.7 430 61.4
CSS0044498 Camellia sinensis var. sinensis HOM05D005187 ORTHO05D006321 9.4e-139 497.7 430 61.4
CDE02G3842 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.1e-138 496.5 377 63.1
BcaB04g21454 Brassica carinata HOM05D005187 ORTHO05D006321 1.5e-136 490.3 361 69.0
Phvul.006G131600 Phaseolus vulgaris HOM05D005187 ORTHO05D006321 2.6e-136 489.6 353 68.0
Lj1P1142T34 Lonicera japonica HOM05D005187 ORTHO05D006321 4.4e-136 488.8 345 69.6
HanXRQChr05g0152021 Helianthus annuus HOM05D005187 ORTHO05D006321 2.2e-135 486.5 426 59.2
Gohir.A05G144300 Gossypium hirsutum HOM05D005187 ORTHO05D006321 8.2e-135 484.6 353 66.3
Zm00001eb232980 Zea mays HOM05D005187 ORTHO05D006321 1.6e-133 480.3 445 54.8
Hma1.2p1_0868F.1_g230440 Hydrangea macrophylla HOM05D005187 ORTHO05D006321 4.5e-133 478.8 438 58.0
SalBow7G0111 Salvia bowleyana HOM05D005187 ORTHO05D006321 2.9e-132 476.1 341 66.9
Os02g0168500 Oryza sativa ssp. japonica HOM05D005187 ORTHO05D006321 1.6e-130 470.3 433 54.5
Zm00001eb058010 Zea mays HOM05D005187 ORTHO05D006321 1.0e-129 467.6 435 54.9
HPP92_018360 Vanilla planifolia HOM05D005187 ORTHO05D006321 1.8e-129 466.8 417 58.0
MBI18_g43439_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 2.2e-124 449.9 353 64.3
Migut.H02421 Erythranthe guttata HOM05D005187 ORTHO05D006321 2.1e-122 443.4 430 56.3
Nn7g38070 Nelumbo nucifera HOM05D005187 ORTHO05D006321 4.4e-120 435.6 322 66.5
CDE05G2899 Ceratophyllum demersum HOM05D005187 ORTHO05D006321 2.7e-117 426.4 330 62.4
A05p42310 Brassica napus HOM05D005187 ORTHO05D006321 4.9e-111 405.6 365 59.2
Migut.K01171 Erythranthe guttata HOM05D005187 ORTHO05D006321 4.3e-107 392.5 436 49.8
MBI18_g45403_MAGBIO Magnolia biondii HOM05D005187 ORTHO05D006321 3.5e-101 372.9 378 55.6
SMO348G0028 Selaginella moellendorffii HOM05D005187 ORTHO05D006321 2.3e-100 370.2 380 52.6
SEGI_38166 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 2.8e-98 363.2 427 48.5
Lsat_1_v5_gn_6_99661 Lactuca sativa HOM05D005187 ORTHO05D006321 7.5e-96 355.1 278 61.5
Lsat_1_v5_gn_8_151020 Lactuca sativa HOM05D005187 ORTHO05D006321 7.5e-96 355.1 278 61.5
TPR.G17504 Trifolium pratense HOM05D005187 ORTHO05D006321 2.8e-74 283.5 235 61.7
SEGI_21451 Sequoiadendron giganteum HOM05D005187 ORTHO05D006321 1.5e-67 261.2 376 44.4
TPR.G17495 Trifolium pratense HOM05D005187 ORTHO05D006321 4.3e-67 259.6 189 65.1
Gorai.011G049800 Gossypium raimondii HOM05D005187 ORTHO05D006321 2.9e-63 246.9 245 54.7
GSVIVG01026258001 Vitis vinifera HOM05D005187 ORTHO05D006321 8.1e-58 228.8 142 74.6
RcHm_v2.0_Chr5g0019601 Rosa chinensis HOM05D005187 ORTHO05D006321 1.4e-54 218.0 258 48.4
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 8.7e-52 208.8 167 63.5
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 1.1e-33 148.7 109 67.0
AUR62023945 Chenopodium quinoa HOM05D005187 ORTHO05D006321 3.1e-33 147.1 145 51.0
C05p61880 Brassica napus HOM05D005187 ORTHO05D000598 4.1e-33 146.7 110 69.1
BcaNung07272 Brassica carinata HOM05D005187 ORTHO05D006321 2.6e-32 144.1 175 50.9
BolC5t34848H Brassica oleracea HOM05D000769 ORTHO05D000598 4.5e-32 143.3 111 66.7
Zm00001eb040420 Zea mays HOM05D005187 ORTHO05D006321 1.8e-25 121.3 101 55.4
RcHm_v2.0_Chr5g0019611 Rosa chinensis HOM05D005187 ORTHO05D006321 6.8e-12 76.3 54 64.8
SEGI_07107 Sequoiadendron giganteum HOM05D000929 ORTHO05D016375 2.5e-06 57.8 55 50.9


User provided reference genes

Program Settings