Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 7.1e-119 430.6 220 100.0
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 6.6e-93 344.4 219 77.6
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 8.7e-93 344.0 219 77.2
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.3e-92 342.0 219 77.2
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.3e-92 342.0 219 77.2
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 4.3e-92 341.7 226 76.1
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 9.6e-92 340.5 216 77.3
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.3e-91 340.1 213 76.5
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 3.6e-91 338.6 215 75.3
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.4e-90 336.7 219 75.8
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 1.2e-89 333.6 224 75.9
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 2.6e-89 332.4 213 75.6
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.6e-89 332.4 226 73.9
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 3.4e-89 332.0 213 74.2
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 9.9e-89 330.5 215 74.9
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 1.3e-88 330.1 220 74.5
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 1.7e-88 329.7 217 73.7
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 2.9e-88 328.9 223 72.6
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 2.9e-88 328.9 216 74.1
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 3.8e-88 328.6 219 74.9
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 4.9e-88 328.2 224 72.8
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 4.9e-88 328.2 216 74.1
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 8.4e-88 327.4 216 73.6
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 1.1e-87 327.0 226 72.6
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.4e-87 326.6 218 73.9
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.9e-87 326.2 216 74.1
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 1.9e-87 326.2 216 71.3
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 2.4e-87 325.9 216 73.1
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 3.2e-87 325.5 223 72.6
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 3.2e-87 325.5 266 63.2
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 4.2e-87 325.1 221 73.3
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 9.3e-87 323.9 227 73.1
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 9.3e-87 323.9 217 72.8
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 9.3e-87 323.9 216 73.1
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 1.2e-86 323.6 221 72.4
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 2.7e-86 322.4 217 69.6
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 7.9e-86 320.9 222 74.3
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 1.3e-85 320.1 217 70.5
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 1.8e-85 319.7 220 70.0
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 3.0e-85 318.9 245 66.1
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 3.9e-85 318.5 220 71.4
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 5.1e-85 318.2 203 76.4
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 5.1e-85 318.2 216 71.8
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 8.7e-85 317.4 223 69.5
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 1.1e-84 317.0 220 69.5
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 1.1e-84 317.0 216 71.8
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.5e-84 316.6 227 70.5
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 1.5e-84 316.6 216 74.5
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.9e-84 316.2 223 69.1
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.9e-84 316.2 213 73.2
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 1.9e-84 316.2 212 69.8
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 2.5e-84 315.8 223 69.5
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 3.3e-84 315.5 216 71.8
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 3.3e-84 315.5 217 71.0
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 7.4e-84 314.3 212 70.8
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.6e-83 313.2 230 67.8
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 4.8e-83 311.6 223 70.9
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 6.2e-83 311.2 225 68.4
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.1e-82 310.5 219 72.1
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.4e-82 310.1 235 66.4
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 3.1e-82 308.9 224 67.9
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 4.0e-82 308.5 221 67.9
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 9.0e-82 307.4 217 67.3
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 9.0e-82 307.4 227 68.7
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 1.2e-81 307.0 225 68.0
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 1.5e-81 306.6 222 69.8
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.5e-81 306.6 218 70.2
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 1.5e-81 306.6 221 69.2
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 2.0e-81 306.2 224 67.9
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 2.0e-81 306.2 230 67.4
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 2.0e-81 306.2 220 68.6
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 3.4e-81 305.4 222 68.0
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 3.4e-81 305.4 220 70.9
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 4.5e-81 305.1 220 69.1
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 4.5e-81 305.1 216 67.1
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 4.5e-81 305.1 218 67.4
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 7.6e-81 304.3 223 68.2
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 7.6e-81 304.3 223 68.6
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 7.6e-81 304.3 223 68.6
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 7.6e-81 304.3 220 70.5
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 1.3e-80 303.5 223 68.2
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 2.9e-80 302.4 213 69.0
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 4.9e-80 301.6 223 67.7
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 4.9e-80 301.6 223 67.7
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 4.9e-80 301.6 217 70.5
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.9e-79 299.7 219 68.5
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 2.5e-79 299.3 218 68.8
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 1.0e-77 293.9 211 72.5
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 1.8e-77 293.1 233 64.8
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.8e-77 293.1 228 64.5
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 2.3e-77 292.7 218 68.3
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 3.9e-77 292.0 220 68.2
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 6.7e-77 291.2 218 67.9
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.1e-76 290.4 246 64.6
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.5e-76 289.3 213 65.7
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 3.3e-76 288.9 221 64.7
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 5.7e-76 288.1 218 64.2
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 7.4e-76 287.7 217 66.4
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.3e-75 287.0 217 65.4
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 4.8e-75 285.0 219 63.0
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 8.2e-75 284.3 256 59.4
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.1e-74 283.9 204 66.2
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 6.9e-74 281.2 249 59.4
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 9.0e-74 280.8 216 63.9
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 1.3e-72 276.9 228 60.1
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 1.7e-72 276.6 219 62.6
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.2e-72 276.2 226 62.8
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 6.5e-72 274.6 187 70.6
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 1.9e-71 273.1 190 70.0
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 4.2e-71 271.9 211 68.7
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 4.6e-70 268.5 162 76.5
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.8e-67 259.2 185 68.6
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 1.8e-66 256.5 223 61.0
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 3.9e-61 238.8 185 67.0
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 5.7e-60 235.0 190 62.1
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 6.9e-58 228.0 236 49.6
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 1.5e-57 226.9 133 76.7
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 3.8e-56 222.2 212 53.8
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.8e-53 213.4 121 81.0
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 3.3e-52 209.1 241 49.0
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 1.2e-49 200.7 116 78.4
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 5.9e-49 198.4 219 52.1
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 7.2e-47 191.4 232 47.4
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 2.7e-46 189.5 205 48.3
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 2.2e-40 169.9 172 52.3
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 2.7e-38 162.9 251 37.8
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.8e-37 160.2 100 74.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 1.3e-32 144.1 178 46.1
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 5.4e-26 122.1 249 36.9
SHI24908 Sapria himalayana HOM05D005618 ORTHO05D007278 3.1e-13 79.7 84 57.1
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.2e-12 77.8 43 81.4
MBI18_g05572_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.2e-09 67.8 43 72.1
Aqoxy7G01552 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 7.8e-09 65.1 34 82.4
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 2.3e-08 63.5 40 67.5
Medtr5g009930 Medicago truncatula HOM05D001916 ORTHO05D003272 3.3e-07 59.7 162 25.9
VMungo1215G1038 Vigna mungo HOM05D001916 ORTHO05D003272 7.3e-07 58.5 162 26.5
LjContig00312_ERROPOS870357g0000946 Lotus japonicus HOM05D001916 ORTHO05D003272 2.8e-06 56.6 179 24.6
Phvul.002G160300 Phaseolus vulgaris HOM05D001916 ORTHO05D003272 3.6e-06 56.2 162 24.7
SGA_v2.0_scaffold10G05278 Striga asiatica HOM05D001916 ORTHO05D003272 3.6e-06 56.2 196 26.5
QL10p020720 Quercus lobata HOM05D005618 ORTHO05D337099 4.7e-06 55.8 34 82.4
BraA03t12130Z Brassica rapa HOM05D001916 ORTHO05D003272 6.2e-06 55.5 205 25.4
Lj2A178T48 Lonicera japonica HOM05D001916 ORTHO05D003272 6.2e-06 55.5 166 24.1
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 6.2e-06 55.5 39 61.5
A09p27900 Brassica napus HOM05D001916 ORTHO05D003272 8.1e-06 55.1 197 24.9
BraA09t38359Z Brassica rapa HOM05D001916 ORTHO05D003272 8.1e-06 55.1 197 24.9
TPR.G6657 Trifolium pratense HOM05D001916 ORTHO05D003272 8.1e-06 55.1 184 25.0


User provided reference genes

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