Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 1.0e-111 406.8 210 100.0
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 2.8e-72 275.8 205 63.9
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.2e-71 271.6 191 66.0
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 6.8e-71 271.2 191 66.0
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 1.5e-70 270.0 191 65.4
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 2.9e-69 265.8 194 64.9
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 6.4e-69 264.6 199 66.8
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.2e-67 260.4 200 64.0
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 6.0e-67 258.1 209 61.7
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.1e-65 253.8 200 64.0
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 5.6e-65 251.5 193 64.2
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 7.3e-65 251.1 206 59.7
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 2.8e-64 249.2 191 63.4
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 4.7e-64 248.4 198 63.1
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 1.8e-63 246.5 202 60.4
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 5.2e-63 245.0 192 64.6
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 1.2e-62 243.8 193 62.7
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 2.6e-62 242.7 201 58.7
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 4.4e-62 241.9 196 61.2
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 5.8e-62 241.5 203 60.6
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 2.2e-61 239.6 201 61.2
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 2.9e-61 239.2 215 57.2
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 3.2e-60 235.7 188 61.7
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 1.2e-59 233.8 197 59.4
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 2.7e-59 232.6 189 60.3
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 3.5e-59 232.3 214 55.6
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 7.8e-59 231.1 206 60.2
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 1.0e-58 230.7 181 59.7
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 3.0e-58 229.2 183 62.8
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 3.0e-58 229.2 203 54.7
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 5.6e-57 224.9 206 54.4
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 7.3e-57 224.6 208 57.7
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 4.8e-56 221.9 196 59.2
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 4.8e-56 221.9 202 55.4
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 6.2e-56 221.5 205 56.1
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 8.1e-56 221.1 191 59.2
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 8.1e-56 221.1 204 53.4
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.8e-55 219.9 204 55.4
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 5.3e-55 218.4 206 54.9
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 9.0e-55 217.6 192 56.2
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 2.6e-54 216.1 206 52.9
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 1.3e-53 213.8 188 58.5
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 6.4e-53 211.5 207 52.7
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 8.4e-53 211.1 195 57.9
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 8.4e-53 211.1 196 56.6
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 8.4e-53 211.1 196 54.6
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 1.1e-52 210.7 201 55.2
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 2.4e-52 209.5 196 56.1
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 3.2e-52 209.1 205 55.1
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 7.1e-52 208.0 188 54.8
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.6e-51 206.8 207 54.6
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 1.6e-51 206.8 197 51.3
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 3.5e-51 205.7 205 52.7
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 6.0e-51 204.9 212 51.9
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 7.8e-51 204.5 207 51.7
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.0e-50 204.1 207 53.6
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 5.1e-50 201.8 208 52.4
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 5.1e-50 201.8 198 55.1
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 5.1e-50 201.8 198 54.5
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 8.7e-50 201.1 202 54.0
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 3.3e-49 199.1 196 53.6
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 5.6e-49 198.4 198 53.5
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 5.6e-49 198.4 197 52.8
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 7.3e-49 198.0 201 54.7
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 1.6e-48 196.8 207 49.8
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 2.1e-48 196.4 196 53.1
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 2.1e-48 196.4 210 52.4
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 2.8e-48 196.1 179 55.9
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 3.6e-48 195.7 226 48.2
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 8.1e-48 194.5 197 51.3
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.1e-47 194.1 174 57.5
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 1.8e-47 193.4 277 41.2
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.8e-47 193.4 174 57.5
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 1.8e-47 193.4 200 53.5
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 3.1e-47 192.6 205 50.2
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 5.3e-47 191.8 212 50.9
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 1.2e-46 190.7 205 49.3
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 2.0e-46 189.9 201 52.2
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 2.0e-46 189.9 201 52.2
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 5.8e-46 188.3 204 47.5
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 5.8e-46 188.3 209 51.2
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 2.4e-44 183.0 192 51.0
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 3.5e-43 179.1 213 46.5
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 3.5e-43 179.1 194 48.5
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 7.9e-43 177.9 195 48.7
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 7.9e-43 177.9 195 48.7
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 1.0e-42 177.6 194 47.9
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.3e-42 177.2 195 48.7
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.3e-42 177.2 188 48.9
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 1.8e-42 176.8 215 46.0
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 2.3e-42 176.4 194 47.4
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 3.0e-42 176.0 195 47.7
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 5.1e-42 175.3 194 47.4
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 5.1e-42 175.3 216 45.4
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 5.6e-41 171.8 194 46.9
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 4.0e-39 165.6 198 47.0
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 9.0e-39 164.5 183 50.8
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 3.5e-35 152.5 141 56.7
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 6.0e-35 151.8 143 55.2
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 9.6e-33 144.4 201 40.8
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 2.8e-32 142.9 125 55.2
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.1e-31 141.0 202 41.6
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 3.2e-28 129.4 103 61.2
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 4.2e-28 129.0 124 55.6
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 6.7e-26 121.7 81 71.6
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 2.5e-25 119.8 113 55.8
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 4.8e-24 115.5 207 37.2
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 6.3e-24 115.2 194 37.6
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.1e-23 114.4 181 41.4
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 1.1e-23 114.4 173 37.6
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 4.1e-23 112.5 87 59.8
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 2.0e-22 110.2 207 35.7
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.8e-18 97.1 131 45.0
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 6.7e-18 95.1 152 38.8
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 4.1e-15 85.9 89 50.6
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 3.6e-11 72.8 57 57.9
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 3.6e-11 72.8 68 55.9
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 1.0e-10 71.2 59 59.3
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 3.9e-10 69.3 63 52.4


User provided reference genes

Program Settings