Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0289 Cannabis sativa HOM05D000718 ORTHO05D007431 2.3e-265 918.3 458 100.0
MD03G1243500 Malus domestica HOM05D000718 ORTHO05D007431 1.4e-217 759.6 456 80.5
Prupe.4G164800 Prunus persica HOM05D000718 ORTHO05D007431 7.8e-213 743.8 456 78.7
RcHm_v2.0_Chr5g0030941 Rosa chinensis HOM05D000718 ORTHO05D007431 1.3e-212 743.0 456 79.2
CiPaw.11G160400 Carya illinoinensis HOM05D000718 ORTHO05D007431 1.4e-209 733.0 460 78.5
FvH4_3g18310 Fragaria vesca HOM05D000718 ORTHO05D007431 2.0e-208 729.2 456 77.9
GSVIVG01014199001 Vitis vinifera HOM05D000718 ORTHO05D007431 2.9e-207 725.3 459 77.6
Haze_09324 Corylus avellana HOM05D000718 ORTHO05D007431 4.9e-207 724.5 473 76.1
FAN25G1161 Fragaria x ananassa HOM05D000718 ORTHO05D007431 1.1e-206 723.4 456 77.4
Rhsim06G0207800 Rhododendron simsii HOM05D000718 ORTHO05D007431 5.4e-206 721.1 459 77.8
Atru.chr2.2147 Acer truncatum HOM05D000718 ORTHO05D007431 7.1e-206 720.7 458 77.5
Dinv18364 Davidia involucrata HOM05D000718 ORTHO05D007431 7.1e-206 720.7 461 77.2
Lj3g0001987 Lotus japonicus HOM05D000718 ORTHO05D007431 9.3e-206 720.3 460 77.4
FAN16G1727 Fragaria x ananassa HOM05D000718 ORTHO05D007431 2.1e-205 719.2 465 76.1
Cfa019567 Carpinus fangiana HOM05D000718 ORTHO05D007431 3.9e-204 714.9 446 78.3
FAN11G0057 Fragaria x ananassa HOM05D000718 ORTHO05D007431 5.6e-203 711.1 456 76.8
Psat0s1037g0040 Pisum sativum HOM05D000718 ORTHO05D007431 7.4e-203 710.7 460 75.7
PGR031G2045 Punica granatum HOM05D000718 ORTHO05D007431 9.6e-203 710.3 456 76.5
THA.LOC104822564 Tarenaya hassleriana HOM05D000718 ORTHO05D007431 2.1e-202 709.1 458 74.9
TPR.G16488 Trifolium pratense HOM05D000718 ORTHO05D007431 2.1e-202 709.1 461 75.9
Lj1A829G32 Lonicera japonica HOM05D000718 ORTHO05D007431 6.2e-202 707.6 459 74.9
arahy.Tifrunner.gnm1.ann1.6IHZ0U Arachis hypogaea HOM05D000718 ORTHO05D007431 8.1e-202 707.2 461 74.4
Ca_12194_v3 Cicer arietinum L. HOM05D000718 ORTHO05D007431 1.1e-201 706.8 460 75.2
Eucgr.K01884 Eucalyptus grandis HOM05D000718 ORTHO05D007431 3.1e-201 705.3 454 75.6
MELO3C025639.2 Cucumis melo HOM05D000718 ORTHO05D007431 5.3e-201 704.5 457 76.1
Thecc.07G114900 Theobroma cacao HOM05D000718 ORTHO05D007431 5.3e-201 704.5 460 75.9
ClCG11G017460 Citrullus lanatus HOM05D000718 ORTHO05D007431 6.9e-201 704.1 456 76.1
Duzib187G1570 Durio zibethinus HOM05D000718 ORTHO05D007431 6.9e-201 704.1 460 75.9
TWI39G0589 Tripterygium wilfordii HOM05D000718 ORTHO05D007431 1.3e-199 699.9 456 75.2
arahy.Tifrunner.gnm1.ann1.STN4DM Arachis hypogaea HOM05D000718 ORTHO05D007431 3.8e-199 698.4 457 74.2
CARHR089850 Cardamine hirsuta HOM05D000718 ORTHO05D007431 8.4e-199 697.2 457 72.6
Glyma.12G157600 Glycine max HOM05D000718 ORTHO05D007431 8.4e-199 697.2 460 74.8
Lalb_Chr01g0006831 Lupinus albus HOM05D000718 ORTHO05D007431 2.4e-198 695.7 456 74.6
Actinidia12577 Actinidia chinensis HOM05D000718 ORTHO05D007431 7.1e-198 694.1 462 74.7
Glyma.06G228900 Glycine max HOM05D000718 ORTHO05D007431 1.6e-197 693.0 461 74.4
COL.COLO4_17547 Corchorus olitorius HOM05D000718 ORTHO05D007431 6.0e-197 691.0 474 73.2
Carub.0003s1457 Capsella rubella HOM05D000718 ORTHO05D007431 1.0e-196 690.3 457 72.2
QL08p026242 Quercus lobata HOM05D000718 ORTHO05D007431 1.8e-196 689.5 471 74.1
Sed0007644 Sechium edule HOM05D000718 ORTHO05D007431 2.5e-195 685.6 457 74.0
AL3G27230 Arabidopsis lyrata HOM05D000718 ORTHO05D007431 4.3e-195 684.9 457 71.6
Phvul.011G162200 Phaseolus vulgaris HOM05D000718 ORTHO05D007431 4.3e-195 684.9 463 74.1
Potri.001G390700 Populus trichocarpa HOM05D000718 ORTHO05D007431 7.4e-195 684.1 457 74.2
AT3G14910 Arabidopsis thaliana HOM05D000718 ORTHO05D007431 2.8e-194 682.2 457 71.6
Thhalv10020708m.g Eutrema salsugineum HOM05D000718 ORTHO05D007431 3.7e-194 681.8 457 71.6
PGSC0003DMG400007071 Solanum tuberosum HOM05D000718 ORTHO05D007431 3.7e-194 681.8 460 73.7
Nitab4.5_0006953g0050 Nicotiana tabacum HOM05D000718 ORTHO05D007431 6.2e-194 681.0 460 73.0
Ah.04g164270 Amaranthus hybridus HOM05D000718 ORTHO05D007431 8.1e-194 680.6 459 73.4
DCAR_013156 Daucus carota HOM05D000718 ORTHO05D007431 8.1e-194 680.6 457 73.7
Peaxi162Scf00111g01475 Petunia axillaris HOM05D000718 ORTHO05D007431 8.1e-194 680.6 460 73.7
BolC5t33913H Brassica oleracea HOM05D000718 ORTHO05D007431 4.0e-193 678.3 457 71.6
Gohir.A01G054400 Gossypium hirsutum HOM05D000718 ORTHO05D007431 6.9e-193 677.6 460 73.5
Medtr8g464030 Medicago truncatula HOM05D000718 ORTHO05D007431 1.2e-192 676.8 500 69.4
Sopen07g030690 Solanum pennellii HOM05D000718 ORTHO05D007431 1.2e-192 676.8 460 73.3
Aa31LG8G2120 Aethionema arabicum HOM05D000718 ORTHO05D007431 1.5e-192 676.4 453 71.7
Gorai.002G054700 Gossypium raimondii HOM05D000718 ORTHO05D007431 2.0e-192 676.0 460 73.3
Solyc07g062450.3 Solanum lycopersicum HOM05D000718 ORTHO05D007431 2.0e-192 676.0 460 73.0
Cc05_g11090 Coffea canephora HOM05D000718 ORTHO05D007431 4.5e-192 674.9 459 72.8
Gohir.D01G042724 Gossypium hirsutum HOM05D000718 ORTHO05D007431 5.8e-192 674.5 460 73.0
EL10Ac4g08344 Beta vulgaris HOM05D000718 ORTHO05D007431 7.6e-192 674.1 459 71.7
Nitab4.5_0003565g0040 Nicotiana tabacum HOM05D000718 ORTHO05D007431 7.6e-192 674.1 460 72.8
vmacro23465 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.2e-191 672.5 476 71.8
Lalb_Chr03g0031171 Lupinus albus HOM05D000718 ORTHO05D007431 3.8e-191 671.8 456 73.0
A05p34500 Brassica napus HOM05D000718 ORTHO05D007431 8.4e-191 670.6 453 71.3
BraA05t22270Z Brassica rapa HOM05D000718 ORTHO05D007431 8.4e-191 670.6 453 71.3
BcaB06g25332 Brassica carinata HOM05D000718 ORTHO05D007431 1.2e-189 666.8 450 71.8
AUR62042779 Chenopodium quinoa HOM05D000718 ORTHO05D007431 1.2e-189 666.8 473 70.6
Migut.H01998 Erythranthe guttata HOM05D000718 ORTHO05D007431 1.6e-189 666.4 468 71.4
Hund02254 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.0e-188 663.7 458 72.3
CAN.G375.14 Capsicum annuum HOM05D000718 ORTHO05D007431 3.0e-188 662.1 460 71.1
Oeu025333.1 Olea europaea HOM05D000718 ORTHO05D007431 4.3e-187 658.3 463 71.7
SGA_v2.0_scaffold130G34293 Striga asiatica HOM05D000718 ORTHO05D007431 2.8e-186 655.6 457 72.0
SalBow7G4178 Salvia bowleyana HOM05D000718 ORTHO05D007431 3.1e-185 652.1 466 71.5
SalBow7G4376 Salvia bowleyana HOM05D000718 ORTHO05D007431 4.1e-185 651.7 466 71.5
PSO782G3001 Papaver somniferum HOM05D000718 ORTHO05D007431 2.6e-184 649.0 462 71.0
ECA240G1747 Erigeron canadensis HOM05D000718 ORTHO05D007431 6.5e-183 644.4 455 69.2
HanXRQChr15g0476211 Helianthus annuus HOM05D000718 ORTHO05D007431 6.5e-183 644.4 460 69.1
Lsat_1_v5_gn_9_99900 Lactuca sativa HOM05D000718 ORTHO05D007431 8.5e-183 644.0 458 71.6
PSO478G1672 Papaver somniferum HOM05D000718 ORTHO05D007431 7.2e-182 641.0 462 69.7
CSS0021542 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 4.6e-181 638.3 462 71.0
C05p52240 Brassica napus HOM05D000718 ORTHO05D007431 2.4e-177 625.9 429 70.6
Aqoxy4G00321 Aquilegia oxysepala HOM05D000718 ORTHO05D007431 6.9e-177 624.4 467 66.8
MBI07_g09566_MAGBIO Magnolia biondii HOM05D000718 ORTHO05D007431 9.1e-177 624.0 515 61.9
Nn1g04439 Nelumbo nucifera HOM05D000718 ORTHO05D007431 9.1e-177 624.0 426 71.6
FAN21G3716 Fragaria x ananassa HOM05D000718 ORTHO05D007431 3.4e-176 622.1 398 75.6
Nn1g09174 Nelumbo nucifera HOM05D000718 ORTHO05D007431 3.4e-176 622.1 459 68.2
Manes.03G101200 Manihot esculenta HOM05D000718 ORTHO05D007431 2.1e-173 612.8 400 73.5
VMungo1127G0879 Vigna mungo HOM05D000718 ORTHO05D007431 1.1e-169 600.5 412 72.6
CSS0043856 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 4.1e-169 598.6 460 67.2
CDE04G1093 Ceratophyllum demersum HOM05D000718 ORTHO05D007431 1.9e-166 589.7 453 65.1
AUR62019575 Chenopodium quinoa HOM05D000718 ORTHO05D007431 5.3e-161 571.6 427 67.4
vmacro11939 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 7.0e-161 571.2 471 65.0
CSS0014195 Camellia sinensis var. sinensis HOM05D000718 ORTHO05D007431 1.9e-158 563.1 460 64.8
ATR0602G196 Amborella trichopoda HOM05D000718 ORTHO05D007431 2.1e-157 559.7 455 62.4
unitig_52.g17395 Utricularia gibba HOM05D000718 ORTHO05D007431 9.1e-153 544.3 467 61.9
Ciclev10021305m.g Citrus clementina HOM05D000718 ORTHO05D007431 7.7e-144 514.6 310 82.9
Os09g0315800 Oryza sativa ssp. japonica HOM05D000718 ORTHO05D007431 1.1e-142 510.8 473 58.8
HPP92_023429 Vanilla planifolia HOM05D000718 ORTHO05D007431 7.2e-142 508.1 467 58.0
SEGI_16322 Sequoiadendron giganteum HOM05D000718 ORTHO05D007431 4.3e-134 482.3 449 53.5
unitig_26.g9517 Utricularia gibba HOM05D005139 ORTHO05D006125 7.3e-126 454.9 422 58.3
Zm00001eb309730 Zea mays HOM05D000718 ORTHO05D007431 5.8e-123 445.3 340 65.3
MD11G1263600 Malus domestica HOM05D000718 ORTHO05D007431 6.0e-120 435.3 282 75.5
CsaV3_4G033110 Cucumis sativus L. HOM05D000718 ORTHO05D007431 1.9e-118 430.3 300 69.3
Sc16g0007570 Simmondsia chinensis HOM05D000718 ORTHO05D007431 8.9e-116 421.4 301 71.1
vmacro11937 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 3.8e-106 389.4 334 65.6
AagrBONN_evm.TU.Sc2ySwM_228.1801 Anthoceros agrestis HOM05D000718 ORTHO05D007431 1.9e-102 377.1 457 45.3
SHI27609 Sapria himalayana HOM05D000718 ORTHO05D007431 1.2e-101 374.4 410 50.2
vmacro23384 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 2.4e-100 370.2 348 60.6
BcaB06g29518 Brassica carinata HOM05D000718 ORTHO05D002712 1.0e-95 354.8 455 47.0
Thecc.07G114700 Theobroma cacao HOM05D000718 ORTHO05D007431 8.1e-93 345.1 380 52.4
SMO367G0522 Selaginella moellendorffii HOM05D000718 ORTHO05D007431 4.5e-91 339.3 453 42.6
Pp3c4_25540 Physcomitrium patens HOM05D000718 ORTHO05D007431 6.0e-88 328.9 466 41.0
Sp3g13120 Schrenkiella parvula HOM05D000718 ORTHO05D007431 6.7e-87 325.5 224 65.2
Mapoly0061s0004 Marchantia polymorpha HOM05D000718 ORTHO05D007431 2.6e-83 313.5 454 39.2
Psat4g090840 Pisum sativum HOM05D000718 ORTHO05D007431 3.5e-80 303.1 249 67.5
MSTRG.14233 Avicennia marina HOM05D000718 ORTHO05D007431 4.3e-78 296.2 233 63.9
vmacro11938 Vaccinium macrocarpon HOM05D000718 ORTHO05D007431 4.0e-76 289.7 304 54.6
Psat3g077000 Pisum sativum HOM05D000718 ORTHO05D007431 1.5e-75 287.7 253 55.3
Sc16g0007580 Simmondsia chinensis HOM05D000718 ORTHO05D007431 8.8e-63 245.4 162 67.9
Thecc.07G115900 Theobroma cacao HOM05D000718 ORTHO05D007431 7.2e-57 225.7 164 65.9
MD11G1263700 Malus domestica HOM05D000718 ORTHO05D007431 1.2e-48 198.4 121 75.2
Hund02252 Selenicereus undatus HOM05D000718 ORTHO05D007431 1.8e-44 184.5 163 66.3
PGSC0003DMG400011947 Solanum tuberosum HOM05D000718 ORTHO05D007431 1.0e-42 178.7 118 72.0
Thecc.07G115200 Theobroma cacao HOM05D000718 ORTHO05D007431 2.3e-39 167.5 126 63.5
Cpa.g.sc77.7 Carica papaya HOM05D000718 ORTHO05D007431 1.5e-38 164.9 116 68.1
TAR627G0847 Trochodendron aralioides HOM05D000718 ORTHO05D007431 2.8e-37 160.6 127 63.0
Psat2g113040 Pisum sativum HOM05D000718 ORTHO05D004709 6.3e-29 132.9 102 68.6
CBR_g49411 Chara braunii HOM05D000019 ORTHO05D000353 1.9e-25 121.3 425 28.0
CAN.G713.20 Capsicum annuum HOM05D000718 ORTHO05D007431 5.4e-20 103.2 109 48.6
Thecc.07G114000 Theobroma cacao HOM05D000718 ORTHO05D007431 2.9e-18 97.4 99 50.5
Thecc.07G114100 Theobroma cacao HOM05D000718 ORTHO05D007431 1.2e-14 85.5 52 84.6
Thecc.07G113800 Theobroma cacao HOM05D000718 ORTHO05D007431 1.7e-13 81.6 65 64.6
Lsat_1_v5_gn_9_99920 Lactuca sativa HOM05D000718 ORTHO05D007431 7.3e-09 66.2 54 66.7


User provided reference genes

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