Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0263 Cannabis sativa HOM05D003442 ORTHO05D004005 1.6e-180 636.0 320 100.0
CANSAT35G0024 Cannabis sativa HOM05D003442 ORTHO05D004005 1.5e-157 559.7 306 90.5
CANSAT56G1635 Cannabis sativa HOM05D003442 ORTHO05D004005 5.8e-154 547.7 306 89.5
CANSAT21G2378 Cannabis sativa HOM05D003442 ORTHO05D004005 3.0e-110 402.5 304 66.4
Manes.09G128600 Manihot esculenta HOM05D003442 ORTHO05D004005 5.6e-109 398.3 311 65.3
Sc09g0001320 Simmondsia chinensis HOM05D003442 ORTHO05D004005 2.8e-108 396.0 308 63.0
Lj4A843G12 Lonicera japonica HOM05D003442 ORTHO05D004005 4.8e-108 395.2 311 63.3
FAN03G3412 Fragaria x ananassa HOM05D003442 ORTHO05D004005 8.1e-108 394.4 312 63.8
QL09p021203 Quercus lobata HOM05D003442 ORTHO05D004005 1.1e-107 394.0 307 64.5
PSO017G5499 Papaver somniferum HOM05D003442 ORTHO05D004005 1.4e-107 393.7 302 64.9
PSO675G6803 Papaver somniferum HOM05D003442 ORTHO05D004005 1.8e-107 393.3 302 64.6
FvH4_7g34170 Fragaria vesca HOM05D003442 ORTHO05D004005 3.1e-107 392.5 312 63.5
FAN01G2089 Fragaria x ananassa HOM05D003442 ORTHO05D004005 3.1e-107 392.5 312 63.5
MD07G1310400 Malus domestica HOM05D003442 ORTHO05D004005 3.1e-107 392.5 307 64.5
Haze_00382 Corylus avellana HOM05D003442 ORTHO05D004005 4.0e-107 392.1 307 64.2
Potri.013G078700 Populus trichocarpa HOM05D003442 ORTHO05D004005 6.9e-107 391.3 307 65.1
Potri.019G047800 Populus trichocarpa HOM05D003442 ORTHO05D004005 6.9e-107 391.3 307 64.5
Sp7g31930 Schrenkiella parvula HOM05D003442 ORTHO05D004005 6.9e-107 391.3 302 64.2
TWI60G0615 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 9.0e-107 391.0 302 64.6
Prupe.2G328400 Prunus persica HOM05D003442 ORTHO05D004005 1.5e-106 390.2 312 62.8
RcHm_v2.0_Chr1g0384521 Rosa chinensis HOM05D003442 ORTHO05D004005 1.5e-106 390.2 312 62.8
A03p62660 Brassica napus HOM05D003442 ORTHO05D004005 2.0e-106 389.8 302 64.2
Carub.0007s0621 Capsella rubella HOM05D003442 ORTHO05D004005 2.6e-106 389.4 302 64.2
Cc09_g04230 Coffea canephora HOM05D003442 ORTHO05D004005 3.4e-106 389.0 311 63.7
Thhalv10025183m.g Eutrema salsugineum HOM05D003442 ORTHO05D004005 3.4e-106 389.0 302 64.2
FAN10G2135 Fragaria x ananassa HOM05D003442 ORTHO05D004005 4.5e-106 388.7 313 62.9
Lj2g0002798 Lotus japonicus HOM05D003442 ORTHO05D004005 4.5e-106 388.7 302 64.2
C07p60210 Brassica napus HOM05D003442 ORTHO05D004005 5.8e-106 388.3 302 63.9
BolC7t46462H Brassica oleracea HOM05D003442 ORTHO05D004005 5.8e-106 388.3 302 63.9
SGA_v2.0_scaffold122G33217 Striga asiatica HOM05D003442 ORTHO05D004005 5.8e-106 388.3 304 63.8
BcaB03g11847 Brassica carinata HOM05D003442 ORTHO05D004005 7.6e-106 387.9 302 63.2
Ciclev10031531m.g Citrus clementina HOM05D003442 ORTHO05D004005 7.6e-106 387.9 307 63.5
Duzib177G0664 Durio zibethinus HOM05D003442 ORTHO05D004005 7.6e-106 387.9 307 63.2
Rhsim05G0022700 Rhododendron simsii HOM05D003442 ORTHO05D004005 7.6e-106 387.9 311 62.7
Thecc.05G221300 Theobroma cacao HOM05D003442 ORTHO05D004005 7.6e-106 387.9 307 63.5
Actinidia31263 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.0e-105 387.5 311 63.3
Migut.F01837 Erythranthe guttata HOM05D003442 ORTHO05D004005 1.0e-105 387.5 302 64.6
Lsat_1_v5_gn_6_25940 Lactuca sativa HOM05D003442 ORTHO05D004005 1.0e-105 387.5 307 63.2
PGR142G0137 Punica granatum HOM05D003442 ORTHO05D004005 1.0e-105 387.5 302 64.9
TWI32G0704 Tripterygium wilfordii HOM05D003442 ORTHO05D004005 1.0e-105 387.5 302 62.9
TAR636G2465 Trochodendron aralioides HOM05D003442 ORTHO05D004005 1.0e-105 387.5 307 62.5
AL5G22780 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 1.3e-105 387.1 302 63.9
BcaNung03800 Brassica carinata HOM05D003442 ORTHO05D004005 1.3e-105 387.1 302 63.2
C01p04650 Brassica napus HOM05D003442 ORTHO05D004005 1.3e-105 387.1 302 63.2
BolC1t00448H Brassica oleracea HOM05D003442 ORTHO05D004005 1.3e-105 387.1 302 63.2
Gohir.A08G221656 Gossypium hirsutum HOM05D003442 ORTHO05D004005 1.3e-105 387.1 305 63.3
VMungo0251G1146 Vigna mungo HOM05D003442 ORTHO05D004005 1.3e-105 387.1 307 63.2
Gorai.004G256400 Gossypium raimondii HOM05D003442 ORTHO05D004005 1.7e-105 386.7 305 63.0
HanXRQChr13g0401211 Helianthus annuus HOM05D003442 ORTHO05D004005 1.7e-105 386.7 311 62.7
A01p04260 Brassica napus HOM05D003442 ORTHO05D004005 2.2e-105 386.3 302 63.2
BraA01t00415Z Brassica rapa HOM05D003442 ORTHO05D004005 2.2e-105 386.3 302 63.2
CiPaw.05G214600 Carya illinoinensis HOM05D003442 ORTHO05D004005 2.2e-105 386.3 307 61.6
THA.LOC104819563 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 2.2e-105 386.3 307 64.2
Cpa.g.sc43.106 Carica papaya HOM05D003442 ORTHO05D004005 2.9e-105 386.0 307 62.5
Lalb_Chr09g0333641 Lupinus albus HOM05D003442 ORTHO05D004005 2.9e-105 386.0 307 62.9
MD01G1238500 Malus domestica HOM05D003442 ORTHO05D004005 2.9e-105 386.0 307 62.9
AT3G42050 Arabidopsis thaliana HOM05D003442 ORTHO05D004005 3.8e-105 385.6 295 64.4
Sc16g0010680 Simmondsia chinensis HOM05D003442 ORTHO05D004005 3.8e-105 385.6 295 63.1
Gohir.D08G241000 Gossypium hirsutum HOM05D003442 ORTHO05D004005 8.4e-105 384.4 305 63.0
Glyma.02G059800 Glycine max HOM05D003442 ORTHO05D004005 1.1e-104 384.0 307 62.9
GSVIVG01024344001 Vitis vinifera HOM05D003442 ORTHO05D004005 1.1e-104 384.0 307 62.5
ECA233G0769 Erigeron canadensis HOM05D003442 ORTHO05D004005 1.9e-104 383.3 302 63.6
Manes.08G064200 Manihot esculenta HOM05D003442 ORTHO05D004005 1.9e-104 383.3 311 62.7
arahy.Tifrunner.gnm1.ann1.CZ7R53 Arachis hypogaea HOM05D003442 ORTHO05D004005 3.2e-104 382.5 304 63.2
Nn7g37514 Nelumbo nucifera HOM05D003442 ORTHO05D004005 3.2e-104 382.5 301 63.5
Sed0022579 Sechium edule HOM05D003442 ORTHO05D004005 4.2e-104 382.1 310 64.2
Duzib106G0604 Durio zibethinus HOM05D003442 ORTHO05D004005 5.5e-104 381.7 307 62.9
Dinv17142 Davidia involucrata HOM05D003442 ORTHO05D004005 7.1e-104 381.3 313 62.3
Atru.chr12.1913 Acer truncatum HOM05D003442 ORTHO05D004005 9.3e-104 380.9 302 62.9
arahy.Tifrunner.gnm1.ann1.K5ZCN3 Arachis hypogaea HOM05D003442 ORTHO05D004005 9.3e-104 380.9 304 62.8
MELO3C009742.2 Cucumis melo HOM05D003442 ORTHO05D004005 9.3e-104 380.9 304 64.1
CsaV3_3G040000 Cucumis sativus L. HOM05D003442 ORTHO05D004005 9.3e-104 380.9 306 63.7
Migut.F02084 Erythranthe guttata HOM05D003442 ORTHO05D004005 9.3e-104 380.9 306 62.7
Glyma.16G142600 Glycine max HOM05D003442 ORTHO05D004005 1.2e-103 380.6 307 62.9
CSS0045568 Camellia sinensis var. sinensis HOM05D003442 ORTHO05D004005 2.1e-103 379.8 311 62.4
vmacro12087 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 2.1e-103 379.8 311 61.4
Eucgr.H02340 Eucalyptus grandis HOM05D003442 ORTHO05D004005 2.7e-103 379.4 308 62.7
AUR62000266 Chenopodium quinoa HOM05D003442 ORTHO05D004005 3.5e-103 379.0 306 60.8
AUR62006614 Chenopodium quinoa HOM05D003442 ORTHO05D004005 3.5e-103 379.0 306 60.8
Sed0014541 Sechium edule HOM05D003442 ORTHO05D004005 6.0e-103 378.3 304 64.1
ATR0743G255 Amborella trichopoda HOM05D003442 ORTHO05D004005 7.9e-103 377.9 302 60.9
MSTRG.8187 Avicennia marina HOM05D003442 ORTHO05D004005 1.0e-102 377.5 306 62.1
BraA03t15336Z Brassica rapa HOM05D003442 ORTHO05D004005 1.0e-102 377.5 323 60.1
Lj4g0025932 Lotus japonicus HOM05D003442 ORTHO05D004005 1.0e-102 377.5 307 61.2
Medtr8g078370 Medicago truncatula HOM05D003442 ORTHO05D004005 1.3e-102 377.1 307 62.2
CAN.G1610.2 Capsicum annuum HOM05D003442 ORTHO05D004005 2.3e-102 376.3 302 63.2
Gorai.003G056300 Gossypium raimondii HOM05D003442 ORTHO05D004005 3.0e-102 375.9 307 61.6
MBI07_g36707_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 3.0e-102 375.9 295 63.1
Aqoxy6G03064 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 8.7e-102 374.4 314 59.6
SalBow3G0476 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.1e-101 374.0 316 58.2
Lalb_Chr05g0227421 Lupinus albus HOM05D003442 ORTHO05D004005 1.5e-101 373.6 304 62.2
DCAR_002085 Daucus carota HOM05D003442 ORTHO05D004005 1.9e-101 373.2 314 59.9
Gohir.A02G127200 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.5e-101 372.9 302 62.6
Gohir.D03G053800 Gossypium hirsutum HOM05D003442 ORTHO05D004005 2.5e-101 372.9 307 61.2
Hund07385 Selenicereus undatus HOM05D003442 ORTHO05D004005 3.3e-101 372.5 325 57.8
PGSC0003DMG401011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 3.3e-101 372.5 302 62.3
Oeu007683.1 Olea europaea HOM05D003442 ORTHO05D004005 4.3e-101 372.1 289 66.1
MBI07_g38305_MAGBIO Magnolia biondii HOM05D003442 ORTHO05D004005 5.7e-101 371.7 295 62.0
Nitab4.5_0002329g0200 Nicotiana tabacum HOM05D003442 ORTHO05D004005 5.7e-101 371.7 302 62.6
Peaxi162Scf01313g00235 Petunia axillaris HOM05D003442 ORTHO05D004005 5.7e-101 371.7 303 62.7
Psat4g090760 Pisum sativum HOM05D003442 ORTHO05D004005 5.7e-101 371.7 307 60.9
Aqoxy2G01953 Aquilegia oxysepala HOM05D003442 ORTHO05D004005 9.6e-101 370.9 314 59.9
EL10Ac4g10031 Beta vulgaris HOM05D003442 ORTHO05D004005 9.6e-101 370.9 306 59.5
PGR042G1782 Punica granatum HOM05D003442 ORTHO05D004005 1.6e-100 370.2 302 62.6
unitig_61.g26274 Utricularia gibba HOM05D003442 ORTHO05D004005 2.8e-100 369.4 306 62.1
BcaNung03365 Brassica carinata HOM05D003442 ORTHO05D004005 3.7e-100 369.0 274 65.7
THA.LOC104804387 Tarenaya hassleriana HOM05D003442 ORTHO05D004005 8.2e-100 367.9 302 62.9
HPP92_007347 Vanilla planifolia HOM05D003442 ORTHO05D004005 8.2e-100 367.9 302 59.9
Sopen07g002070 Solanum pennellii HOM05D003442 ORTHO05D004005 4.1e-99 365.5 302 61.6
Sopen12g004770 Solanum pennellii HOM05D003442 ORTHO05D004005 4.1e-99 365.5 302 62.9
Lj2C606G3 Lonicera japonica HOM05D003442 ORTHO05D004005 9.0e-99 364.4 307 60.3
SalBow1G1076 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.5e-98 363.6 302 60.3
SalBow1G3564 Salvia bowleyana HOM05D003442 ORTHO05D004005 1.5e-98 363.6 302 60.3
Solyc07g005940.4 Solanum lycopersicum HOM05D003442 ORTHO05D004005 2.6e-98 362.8 302 61.3
Ca_22246_v3 Cicer arietinum L. HOM05D003442 ORTHO05D004005 1.0e-97 360.9 274 65.3
PGSC0003DMG400007911 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.0e-97 360.9 302 61.9
Rhsim09G0020400 Rhododendron simsii HOM05D003442 ORTHO05D004005 1.7e-97 360.1 355 53.8
Cfa016067 Carpinus fangiana HOM05D003442 ORTHO05D004005 2.9e-97 359.4 286 63.3
Hund21933 Selenicereus undatus HOM05D003442 ORTHO05D004005 1.1e-96 357.5 315 55.6
TAR365G0691 Trochodendron aralioides HOM05D003442 ORTHO05D004005 2.5e-96 356.3 281 64.8
SGA_v2.0_scaffold83G26364 Striga asiatica HOM05D003442 ORTHO05D004005 3.2e-96 355.9 303 60.1
Zm00001eb323620 Zea mays HOM05D003442 ORTHO05D004005 4.2e-96 355.5 304 55.9
COL.COLO4_15183 Corchorus olitorius HOM05D003442 ORTHO05D004005 5.5e-96 355.1 307 60.9
Aa31LG2G16640 Aethionema arabicum HOM05D003442 ORTHO05D004005 6.1e-95 351.7 302 59.9
DCAR_023762 Daucus carota HOM05D003442 ORTHO05D004005 1.0e-94 350.9 323 56.3
PSO675G6576 Papaver somniferum HOM05D003442 ORTHO05D004005 2.3e-94 349.7 315 57.1
Oeu001224.1 Olea europaea HOM05D003442 ORTHO05D004005 3.0e-94 349.4 274 62.8
CDE02G3771 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.9e-94 349.0 301 57.5
C03p85940 Brassica napus HOM05D003442 ORTHO05D004005 8.2e-92 341.3 302 57.6
ClCG10G016340 Citrullus lanatus HOM05D003442 ORTHO05D004005 4.1e-91 339.0 303 58.7
A08p17030 Brassica napus HOM05D003442 ORTHO05D004005 1.2e-90 337.4 302 57.0
BraA08t33665Z Brassica rapa HOM05D003442 ORTHO05D004005 1.2e-90 337.4 302 57.0
BcaC01g00920 Brassica carinata HOM05D003442 ORTHO05D004005 1.5e-90 337.0 302 57.3
Ah.04g159350 Amaranthus hybridus HOM05D003442 ORTHO05D004005 8.8e-86 321.2 301 55.1
SMO361G0576 Selaginella moellendorffii HOM05D003442 ORTHO05D004005 8.8e-86 321.2 305 53.4
Nitab4.5_0003759g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.8e-84 316.2 302 56.0
CARHR242660 Cardamine hirsuta HOM05D003442 ORTHO05D004005 1.4e-83 313.9 224 67.0
Nitab4.5_0006810g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.0e-82 310.1 302 55.0
SEGI_25036 Sequoiadendron giganteum HOM05D003442 ORTHO05D004005 2.0e-82 310.1 281 53.7
AagrBONN_evm.TU.Sc2ySwM_344.2700 Anthoceros agrestis HOM05D003442 ORTHO05D004005 1.9e-80 303.5 294 49.0
Pp3c1_26980 Physcomitrium patens HOM05D003442 ORTHO05D004005 3.9e-78 295.8 302 48.7
Pp3c10_2890 Physcomitrium patens HOM05D003442 ORTHO05D004005 3.1e-75 286.2 302 47.7
Mapoly0102s0002 Marchantia polymorpha HOM05D003442 ORTHO05D004005 5.3e-75 285.4 302 46.4
Peaxi162Scf00062g00013 Petunia axillaris HOM05D003442 ORTHO05D004005 1.2e-74 284.3 306 51.3
SGA_v2.0_scaffold340G49316 Striga asiatica HOM05D003442 ORTHO05D007315 2.2e-73 280.0 253 58.5
Nitab4.5_0008310g0020 Nicotiana tabacum HOM05D003442 ORTHO05D004005 2.5e-72 276.6 293 52.2
AL7G17190 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 9.7e-69 264.6 196 65.8
Solyc12g009890.3 Solanum lycopersicum HOM05D003442 ORTHO05D004005 4.4e-61 239.2 205 59.5
AagrBONN_evm.TU.Sc2ySwM_368.2763 Anthoceros agrestis HOM05D003442 ORTHO05D004005 6.3e-60 235.3 300 37.3
CDE02G0117 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 1.8e-59 233.8 247 51.0
Phvul.003G250932 Phaseolus vulgaris HOM05D003442 ORTHO05D004005 6.5e-57 225.3 169 65.1
arahy.Tifrunner.gnm1.ann1.I4HYIQ Arachis hypogaea HOM05D003442 ORTHO05D004005 1.4e-54 217.6 160 66.2
MSTRG.344 Avicennia marina HOM05D003442 ORTHO05D004005 4.0e-54 216.1 160 66.2
Ciclev10032936m.g Citrus clementina HOM05D003442 ORTHO05D004005 4.4e-53 212.6 160 66.2
Cre01.g027800 Chlamydomonas reinhardtii HOM05D003442 ORTHO05D004005 9.8e-53 211.5 297 39.1
Actinidia07921 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.7e-49 200.7 142 70.4
CDE04G1479 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 3.3e-48 196.4 169 56.8
CBR_g3526 Chara braunii HOM05D003442 ORTHO05D004005 2.8e-47 193.4 216 44.0
PRCOL_00001521 Prasinoderma coloniale HOM05D003442 ORTHO05D004005 1.3e-44 184.5 290 34.5
AL5G22860 Arabidopsis lyrata HOM05D003442 ORTHO05D004005 9.2e-43 178.3 197 48.7
SHI02588 Sapria himalayana HOM05D000002 ORTHO05D000001 2.0e-42 177.2 196 47.4
ATR0794G121 Amborella trichopoda HOM05D003442 ORTHO05D004005 4.6e-42 176.0 139 63.3
MCO09G349 Micromonas commoda HOM05D003442 ORTHO05D004005 1.8e-38 164.1 319 32.3
ATR0794G033 Amborella trichopoda HOM05D003442 ORTHO05D004005 2.0e-37 160.6 148 53.4
MD01G1238200 Malus domestica HOM05D003442 ORTHO05D004005 5.4e-35 152.5 201 43.3
Sed0024694 Sechium edule HOM05D003442 ORTHO05D004005 4.3e-32 142.9 159 53.5
CDE04G3472 Ceratophyllum demersum HOM05D003442 ORTHO05D004005 4.7e-31 139.4 100 66.0
Oeu062031.1 Olea europaea HOM05D003442 ORTHO05D004005 1.1e-27 128.3 96 67.7
Actinidia07920 Actinidia chinensis HOM05D003442 ORTHO05D004005 1.6e-26 124.4 120 55.8
vmacro00759 Vaccinium macrocarpon HOM05D003442 ORTHO05D004005 2.1e-26 124.0 90 68.9
Ciclev10033985m.g Citrus clementina HOM05D003442 ORTHO05D004005 1.3e-25 121.3 80 75.0
SHI02587 Sapria himalayana HOM05D003442 ORTHO05D004005 2.3e-25 120.6 131 51.1
Lsat_1_v5_gn_2_1040 Lactuca sativa HOM05D003442 ORTHO05D004005 1.2e-23 114.8 141 48.9
PGSC0003DMG402011206 Solanum tuberosum HOM05D003442 ORTHO05D004005 1.6e-23 114.4 80 72.5
CARHR242670 Cardamine hirsuta HOM05D003442 ORTHO05D004005 5.2e-14 82.8 80 56.2
Rhsim04G0133200 Rhododendron simsii HOM05D003442 ORTHO05D004005 2.9e-12 77.0 75 53.3
Zm00001eb106630 Zea mays HOM05D003442 ORTHO05D004005 8.4e-12 75.5 94 42.6
Pp3c2_19490 Physcomitrium patens HOM05D003442 ORTHO05D004005 1.6e-10 71.2 80 45.0
Rhsim04G0133100 Rhododendron simsii HOM05D003442 ORTHO05D339879 1.3e-07 61.6 203 29.1
Nitab4.5_0009666g0010 Nicotiana tabacum HOM05D008541 ORTHO05D010458 6.2e-07 59.3 52 57.7


User provided reference genes

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