Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 0.0e+00 1358.6 722 100.0
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 7.8e-191 671.4 758 55.8
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 3.3e-189 666.0 754 54.2
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 3.3e-189 666.0 763 55.2
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 6.2e-188 661.8 754 54.0
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 8.9e-187 657.9 745 54.1
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.3e-185 654.1 754 53.2
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.9e-185 652.1 754 53.7
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 6.4e-185 651.7 746 53.5
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 4.1e-184 649.0 760 53.4
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 1.3e-182 644.0 755 53.4
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 1.8e-179 633.6 764 52.9
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.8e-179 633.6 763 52.8
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.9e-177 626.3 752 53.2
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.9e-176 623.6 762 52.1
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 9.6e-173 611.3 758 51.5
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.9e-165 587.0 764 49.7
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 1.4e-163 580.9 771 48.5
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 3.1e-163 579.7 764 49.1
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 3.4e-162 576.2 753 49.0
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 5.8e-162 575.5 761 49.5
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 8.4e-161 571.6 765 48.1
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 7.1e-160 568.5 759 50.5
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 7.9e-159 565.1 749 49.1
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 1.9e-157 560.5 766 47.3
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 9.6e-157 558.1 763 48.8
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 6.9e-155 552.0 758 48.0
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 2.6e-154 550.1 752 46.9
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 7.6e-154 548.5 762 48.8
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 1.9e-152 543.9 756 46.6
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.9e-152 543.9 753 47.5
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 2.5e-152 543.5 755 47.3
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 6.0e-151 538.9 769 46.3
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 2.3e-150 537.0 753 45.9
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 1.5e-149 534.3 761 47.3
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 7.4e-149 531.9 758 46.6
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 2.1e-148 530.4 721 48.5
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.4e-147 527.7 760 47.0
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 1.0e-145 521.5 773 44.2
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 3.8e-145 519.6 667 52.0
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 2.5e-144 516.9 732 47.0
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 5.5e-144 515.8 708 47.3
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.0e-142 510.0 755 45.7
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 6.7e-142 508.8 753 46.2
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 4.3e-141 506.1 789 45.2
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 3.7e-140 503.1 753 45.9
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 8.8e-134 481.9 751 43.8
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 3.1e-131 473.4 744 44.9
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 3.1e-131 473.4 743 43.1
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.5e-130 471.1 756 43.7
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 1.1e-128 464.9 757 43.1
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 5.5e-128 462.6 749 43.0
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 1.2e-127 461.5 742 43.7
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 1.6e-127 461.1 800 41.9
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 4.7e-127 459.5 740 44.5
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 1.0e-126 458.4 750 42.8
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 1.8e-126 457.6 759 43.3
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 2.3e-126 457.2 758 41.8
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 4.1e-123 446.4 754 42.6
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 7.7e-122 442.2 790 41.4
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 7.7e-122 442.2 790 41.4
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 5.0e-121 439.5 746 42.5
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 8.5e-121 438.7 737 40.8
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.8e-118 431.0 731 40.5
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 3.0e-118 430.3 840 39.5
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 6.3e-116 422.5 762 40.7
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.4e-115 421.4 698 43.3
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 3.1e-115 420.2 672 42.7
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 5.9e-114 416.0 754 40.3
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 4.2e-112 409.8 728 40.9
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 1.8e-110 404.4 696 43.1
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 7.5e-109 399.1 716 39.8
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 1.3e-105 388.3 614 45.1
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.9e-104 384.4 309 67.0
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 1.8e-102 377.9 333 62.5
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 2.3e-102 377.5 721 39.7
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 4.0e-94 350.1 546 45.6
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 2.9e-92 344.0 459 48.8
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 5.9e-90 336.3 734 36.1
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 1.6e-79 301.6 240 66.7
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 2.3e-78 297.7 501 40.7
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 3.1e-78 297.4 533 40.2
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 2.9e-76 290.8 302 52.6
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 7.3e-72 276.2 391 46.3
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 1.6e-71 275.0 378 49.5
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 5.4e-59 233.4 264 49.2
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.2e-50 205.7 469 34.1
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 7.6e-45 186.4 159 64.2
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 7.9e-42 176.4 157 62.4
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 1.6e-31 142.1 202 47.0
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 6.5e-28 130.2 320 38.1
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 1.9e-27 128.6 98 65.3
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 5.5e-27 127.1 186 41.4
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 1.5e-16 92.4 84 52.4
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 2.0e-16 92.0 83 59.0
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 6.5e-12 77.0 103 48.5
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 2.5e-11 75.1 227 28.6
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.3e-09 68.6 153 35.3
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 2.8e-07 61.6 93 45.2


User provided reference genes

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