Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0194 Cannabis sativa HOM05D005286 ORTHO05D006348 6.6e-282 973.4 495 100.0
QL10p041275 Quercus lobata HOM05D005286 ORTHO05D006348 1.6e-198 696.4 478 73.8
Prupe.4G274700 Prunus persica HOM05D005286 ORTHO05D006348 2.0e-198 696.0 498 71.1
CiPaw.03G118000 Carya illinoinensis HOM05D005286 ORTHO05D006348 1.2e-195 686.8 476 74.2
MD15G1135000 Malus domestica HOM05D005286 ORTHO05D006348 1.2e-195 686.8 493 71.6
Cfa021278 Carpinus fangiana HOM05D005286 ORTHO05D006348 4.0e-194 681.8 495 72.3
Ciclev10000962m.g Citrus clementina HOM05D005286 ORTHO05D006348 2.2e-192 676.0 491 70.1
FvH4_1g24860 Fragaria vesca HOM05D005286 ORTHO05D006348 1.8e-191 672.9 493 69.0
FAN19G2916 Fragaria x ananassa HOM05D005286 ORTHO05D006348 1.8e-191 672.9 493 69.0
GSVIVG01022340001 Vitis vinifera HOM05D005286 ORTHO05D006348 3.1e-191 672.2 497 70.2
RcHm_v2.0_Chr2g0122521 Rosa chinensis HOM05D005286 ORTHO05D006348 4.5e-190 668.3 490 69.2
FAN23G2334 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.9e-189 665.6 493 68.4
FAN26G1990 Fragaria x ananassa HOM05D005286 ORTHO05D006348 2.5e-188 662.5 493 68.2
Thecc.01G137300 Theobroma cacao HOM05D005286 ORTHO05D006348 3.2e-188 662.1 484 70.0
FAN28G1250 Fragaria x ananassa HOM05D005286 ORTHO05D006348 5.5e-188 661.4 493 68.0
TWI75G1712 Tripterygium wilfordii HOM05D005286 ORTHO05D006348 9.4e-188 660.6 495 68.7
Atru.chr4.988 Acer truncatum HOM05D005286 ORTHO05D006348 1.4e-186 656.8 492 69.1
Solyc12g088020.1 Solanum lycopersicum HOM05D005286 ORTHO05D006348 2.3e-186 656.0 482 67.8
TAR625G0087 Trochodendron aralioides HOM05D005286 ORTHO05D006348 2.3e-186 656.0 503 67.4
Sopen12g030050 Solanum pennellii HOM05D005286 ORTHO05D006348 8.8e-186 654.1 482 68.0
PGSC0003DMG400045338 Solanum tuberosum HOM05D005286 ORTHO05D006348 4.4e-185 651.7 491 67.4
Duzib147G1331 Durio zibethinus HOM05D005286 ORTHO05D006348 2.8e-184 649.0 519 66.3
Actinidia16523 Actinidia chinensis HOM05D005286 ORTHO05D006348 4.8e-184 648.3 497 67.8
Gohir.A12G085400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 4.1e-183 645.2 491 67.8
Duzib187G0999 Durio zibethinus HOM05D005286 ORTHO05D006348 7.0e-183 644.4 501 67.1
Lj4A421T8 Lonicera japonica HOM05D005286 ORTHO05D006348 7.0e-183 644.4 484 67.6
VMungo1309G1016 Vigna mungo HOM05D005286 ORTHO05D006348 2.0e-182 642.9 501 66.9
Gohir.D12G083400 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.7e-182 642.5 491 67.6
MSTRG.23499 Avicennia marina HOM05D005286 ORTHO05D006348 7.7e-182 641.0 490 67.3
Ca_16981_v3 Cicer arietinum L. HOM05D005286 ORTHO05D006348 2.9e-181 639.0 501 66.1
Lj1g0003788 Lotus japonicus HOM05D003519 ORTHO05D004443 3.8e-181 638.6 504 66.3
CSS0034769 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 1.9e-180 636.3 490 67.8
Manes.12G159000 Manihot esculenta HOM05D005286 ORTHO05D006348 2.5e-180 636.0 470 69.6
Gorai.008G094500 Gossypium raimondii HOM05D005286 ORTHO05D006348 3.2e-180 635.6 505 66.1
CSS0004303 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 4.2e-180 635.2 463 70.2
Lalb_Chr23g0272691 Lupinus albus HOM05D005286 ORTHO05D006348 5.5e-180 634.8 501 66.7
Phvul.009G154600 Phaseolus vulgaris HOM05D005286 ORTHO05D006348 9.5e-180 634.0 501 66.7
ClCG04G002290 Citrullus lanatus HOM05D005286 ORTHO05D006348 2.1e-179 632.9 491 66.4
Rhsim08G0000400 Rhododendron simsii HOM05D005286 ORTHO05D006348 2.1e-179 632.9 480 67.5
Aqoxy5G02419 Aquilegia oxysepala HOM05D005286 ORTHO05D006348 4.7e-179 631.7 470 68.7
Glyma.06G155750 Glycine max HOM05D005286 ORTHO05D006348 4.7e-179 631.7 498 66.7
Sabra07G0083800 Salix brachista HOM05D005286 ORTHO05D006348 1.8e-178 629.8 490 67.6
Potri.007G101600 Populus trichocarpa HOM05D005286 ORTHO05D006348 2.3e-178 629.4 499 66.5
TPR.G33580 Trifolium pratense HOM05D005286 ORTHO05D006348 4.0e-178 628.6 479 67.2
PGR119G0364 Punica granatum HOM05D005286 ORTHO05D006348 2.6e-177 625.9 504 63.9
Medtr3g096675 Medicago truncatula HOM05D005286 ORTHO05D006348 1.3e-176 623.6 503 65.0
arahy.Tifrunner.gnm1.ann1.7K8RK5 Arachis hypogaea HOM05D005286 ORTHO05D006348 2.8e-176 622.5 520 62.1
CAN.G1104.7 Capsicum annuum HOM05D005286 ORTHO05D006348 2.8e-176 622.5 488 64.8
MELO3C008897.2 Cucumis melo HOM05D005286 ORTHO05D006348 1.1e-175 620.5 502 64.1
arahy.Tifrunner.gnm1.ann1.ZN9YLD Arachis hypogaea HOM05D005286 ORTHO05D006348 1.4e-175 620.2 484 64.7
Cc07_g21020 Coffea canephora HOM05D005286 ORTHO05D006348 1.8e-175 619.8 494 65.2
SGA_v2.0_scaffold189G40378 Striga asiatica HOM05D005286 ORTHO05D006348 2.4e-175 619.4 488 65.4
Peaxi162Scf00151g00811 Petunia axillaris HOM05D005286 ORTHO05D006348 4.1e-175 618.6 516 62.4
CsaV3_4G030380 Cucumis sativus L. HOM05D005286 ORTHO05D006348 5.4e-175 618.2 502 63.7
vmacro18685 Vaccinium macrocarpon HOM05D005286 ORTHO05D006348 7.0e-175 617.8 485 65.8
Hma1.2p1_3117F.1_g332810 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 2.0e-174 616.3 520 63.1
Lsat_1_v5_gn_1_78000 Lactuca sativa HOM05D005286 ORTHO05D006348 3.5e-174 615.5 471 67.1
Sc09g0002230 Simmondsia chinensis HOM05D005286 ORTHO05D006348 4.5e-174 615.1 477 65.4
Migut.H00797 Erythranthe guttata HOM05D005286 ORTHO05D006348 7.8e-174 614.4 464 67.7
Oeu037874.1 Olea europaea HOM05D005286 ORTHO05D006348 7.8e-174 614.4 469 66.5
Sed0025698 Sechium edule HOM05D005286 ORTHO05D006348 1.0e-173 614.0 477 65.2
ECA248G0233 Erigeron canadensis HOM05D005286 ORTHO05D006348 2.3e-173 612.8 489 64.0
Potri.007G101700 Populus trichocarpa HOM05D005286 ORTHO05D006348 6.6e-173 611.3 488 65.2
HanXRQChr01g0017141 Helianthus annuus HOM05D005286 ORTHO05D006348 4.3e-172 608.6 470 65.5
THA.LOC104819345 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 5.6e-172 608.2 485 64.3
CARHR277830 Cardamine hirsuta HOM05D005286 ORTHO05D006348 4.7e-171 605.1 507 62.5
Nn1g08960 Nelumbo nucifera HOM05D005286 ORTHO05D006348 8.0e-171 604.4 444 68.9
Aa31LG1G17980 Aethionema arabicum HOM05D005286 ORTHO05D006348 1.4e-170 603.6 459 66.4
AL8G41150 Arabidopsis lyrata HOM05D005286 ORTHO05D006348 3.0e-170 602.4 473 65.3
BcaB02g09762 Brassica carinata HOM05D005286 ORTHO05D006348 3.0e-170 602.4 466 65.9
AT5G63910 Arabidopsis thaliana HOM05D005286 ORTHO05D006348 2.0e-169 599.7 460 65.7
Nitab4.5_0000954g0020 Nicotiana tabacum HOM05D005286 ORTHO05D006348 2.0e-169 599.7 479 64.1
BcaC01g02644 Brassica carinata HOM05D005286 ORTHO05D006348 2.9e-168 595.9 464 65.5
C03p62500 Brassica napus HOM05D005286 ORTHO05D006348 2.9e-168 595.9 498 62.0
BolC3t18507H Brassica oleracea HOM05D005286 ORTHO05D006348 2.9e-168 595.9 498 62.0
Sp2g26980 Schrenkiella parvula HOM05D005286 ORTHO05D006348 2.9e-168 595.9 498 62.2
Carub.0008s2471 Capsella rubella HOM05D005286 ORTHO05D006348 3.7e-168 595.5 473 64.5
A06p30530 Brassica napus HOM05D005286 ORTHO05D006348 8.3e-168 594.3 461 64.9
BraA06t26002Z Brassica rapa HOM05D005286 ORTHO05D006348 8.3e-168 594.3 461 64.9
Eucgr.I00123 Eucalyptus grandis HOM05D005286 ORTHO05D006348 1.2e-166 590.5 541 58.6
PSO170G0528 Papaver somniferum HOM05D005286 ORTHO05D006348 2.7e-166 589.3 481 62.4
Hund21799 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.3e-165 587.0 494 60.5
THA.LOC104818420 Tarenaya hassleriana HOM05D005286 ORTHO05D006348 4.7e-163 578.6 513 58.3
Ah.06g191030 Amaranthus hybridus HOM05D005286 ORTHO05D006348 8.9e-162 574.3 467 61.5
ATR0138G018 Amborella trichopoda HOM05D005286 ORTHO05D006348 1.7e-160 570.1 490 62.9
CSS0028284 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 5.4e-159 565.1 416 68.0
EL10Ac4g09623 Beta vulgaris HOM05D005286 ORTHO05D006348 7.0e-159 564.7 506 57.7
Thhalv10004131m.g Eutrema salsugineum HOM05D005286 ORTHO05D006348 3.3e-156 555.8 473 61.9
HPP92_011629 Vanilla planifolia HOM05D005286 ORTHO05D006348 4.0e-154 548.9 479 57.8
MBI06_g35210_MAGBIO Magnolia biondii HOM05D005286 ORTHO05D006348 7.5e-153 544.7 563 54.5
COL.COLO4_35813 Corchorus olitorius HOM05D005286 ORTHO05D006348 3.9e-149 532.3 503 58.3
Nn5g28436 Nelumbo nucifera HOM05D005286 ORTHO05D006348 4.3e-148 528.9 455 61.5
AUR62000514 Chenopodium quinoa HOM05D005286 ORTHO05D006348 1.7e-144 516.9 425 61.9
Sabra07G0083900 Salix brachista HOM05D005286 ORTHO05D006348 1.1e-143 514.2 391 67.0
AUR62006858 Chenopodium quinoa HOM05D005286 ORTHO05D006348 5.4e-143 511.9 425 61.4
CSS0025452 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 2.1e-142 510.0 496 56.9
Nitab4.5_0000432g0040 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.3e-141 507.3 479 57.8
Gohir.D12G083401 Gossypium hirsutum HOM05D005286 ORTHO05D006348 2.8e-139 499.6 396 65.9
Zm00001eb434510 Zea mays HOM05D005286 ORTHO05D006348 9.9e-137 491.1 446 56.3
DCAR_019994 Daucus carota HOM05D005286 ORTHO05D006348 3.3e-132 476.1 491 55.6
Hund07236 Selenicereus undatus HOM05D005286 ORTHO05D006348 1.7e-128 463.8 405 59.3
SMO119G0327 Selaginella moellendorffii HOM05D005286 ORTHO05D006348 1.4e-127 460.7 441 54.2
Psat5g059680 Pisum sativum HOM05D005286 ORTHO05D006348 9.6e-124 448.0 353 65.4
Mapoly0032s0088 Marchantia polymorpha HOM05D005286 ORTHO05D006348 1.9e-119 433.7 444 51.4
QL10p041264 Quercus lobata HOM05D005286 ORTHO05D006348 8.4e-112 408.3 266 74.4
Hma1.2p1_0310F.1_g121020 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 4.1e-98 362.8 229 76.0
SEGI_22884 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.4e-93 347.8 253 66.8
SEGI_35897 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 1.4e-93 347.8 253 66.8
Cpa.g.sc37.7 Carica papaya HOM05D005286 ORTHO05D006348 3.1e-90 336.7 260 67.7
Haze_10873 Corylus avellana HOM05D005286 ORTHO05D006348 5.3e-90 335.9 294 63.6
Dinv24561 Davidia involucrata HOM05D005286 ORTHO05D006348 3.9e-85 319.7 200 75.5
Dinv15529 Davidia involucrata HOM05D005286 ORTHO05D006348 1.1e-84 318.2 201 74.6
AagrBONN_evm.TU.Sc2ySwM_362.2029 Anthoceros agrestis HOM05D005286 ORTHO05D006348 2.5e-79 300.4 323 48.0
Pp3c3_10560 Physcomitrium patens HOM05D005286 ORTHO05D006348 5.5e-79 299.3 337 46.9
unitig_748.g8003 Utricularia gibba HOM05D005286 ORTHO05D006348 1.4e-77 294.7 239 63.6
CBR_g8546 Chara braunii HOM05D005286 ORTHO05D006348 4.4e-76 289.7 302 49.0
QL10p041267 Quercus lobata HOM05D005286 ORTHO05D006348 5.0e-72 276.2 222 65.3
DCAR_000205 Daucus carota HOM05D005286 ORTHO05D006348 1.2e-70 271.6 188 70.7
Dinv24565 Davidia involucrata HOM05D005286 ORTHO05D006348 2.3e-69 267.3 223 62.3
CSS0038762 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 9.8e-68 261.9 217 64.1
unitig_748.g8002 Utricularia gibba HOM05D005286 ORTHO05D006348 1.7e-67 261.2 173 71.7
CSS0007937 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 8.6e-64 248.8 224 58.5
CDE08G1426 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.5e-63 246.1 248 55.2
Oeu039334.1 Olea europaea HOM05D005286 ORTHO05D006348 2.1e-62 244.2 178 69.1
RcHm_v2.0_Chr6g0261231 Rosa chinensis HOM05D005286 ORTHO05D006348 9.8e-60 235.3 172 67.4
CDE08G1664 Ceratophyllum demersum HOM05D005286 ORTHO05D006348 5.2e-53 213.0 162 61.1
Cpa.g.sc37.6 Carica papaya HOM05D005286 ORTHO05D006348 1.5e-52 211.5 158 69.0
CBR_g864 Chara braunii HOM05D005286 ORTHO05D006348 1.5e-39 168.3 427 27.2
Nitab4.5_0004530g0050 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.4e-37 161.8 162 54.3
PRCOL_00003919 Prasinoderma coloniale HOM05D005286 ORTHO05D006348 5.2e-37 159.8 492 30.7
CSS0025385 Camellia sinensis var. sinensis HOM05D005286 ORTHO05D006348 7.3e-31 139.4 231 40.3
SEGI_37681 Sequoiadendron giganteum HOM05D005286 ORTHO05D006348 2.4e-29 134.4 167 48.5
Nitab4.5_0008592g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 1.1e-26 125.6 122 56.6
Os04g0692800 Oryza sativa ssp. japonica HOM05D005286 ORTHO05D006348 1.7e-24 118.2 143 46.2
Cfa022134 Carpinus fangiana HOM05D005286 ORTHO05D006348 1.9e-23 114.8 275 33.1
Nitab4.5_0008217g0010 Nicotiana tabacum HOM05D005286 ORTHO05D006348 4.0e-21 107.1 102 53.9
Glyma.04G210301 Glycine max HOM05D005286 ORTHO05D006348 7.6e-20 102.8 55 89.1
Hma1.2p1_0310F.1_g121040 Hydrangea macrophylla HOM05D005286 ORTHO05D006348 3.6e-14 84.0 61 68.9
CBR_g8549 Chara braunii HOM05D005286 ORTHO05D006348 2.0e-12 78.2 151 35.1
Oeu039336.1 Olea europaea HOM05D001574 ORTHO05D006348 7.6e-12 76.3 57 57.9
Cre10.g425200 Chlamydomonas reinhardtii HOM05D005286 ORTHO05D006348 2.1e-09 68.2 150 31.3
SalBow2G0549 Salvia bowleyana HOM05D002652 ORTHO05D002739 4.6e-09 67.0 49 73.5
Peaxi162Scf00151g00815 Petunia axillaris HOM05D005286 ORTHO05D006348 7.9e-09 66.2 78 47.4
Nitab4.5_0002142g0070 Nicotiana tabacum HOM05D005286 ORTHO05D006348 3.0e-08 64.3 62 51.6
Nitab4.5_0005379g0060 Nicotiana tabacum HOM05D005286 ORTHO05D006348 6.2e-06 56.6 93 43.0


User provided reference genes

Program Settings