Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0192 Cannabis sativa HOM05D005070 ORTHO05D005987 7.2e-50 200.3 102 100.0
CANSAT80G1974 Cannabis sativa HOM05D005070 ORTHO05D005987 3.0e-48 194.9 102 97.1
CSS0001011 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 5.2e-32 141.0 99 73.7
Hma1.2p1_0002F.1_g002700 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.0e-31 139.0 98 71.4
MD14G1185300 Malus domestica HOM05D005070 ORTHO05D005987 2.0e-31 139.0 99 71.7
Hma1.2p1_1643F.1_g295270 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.6e-31 138.7 98 71.4
Hma1.2p1_2351F.1_g320498 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 2.6e-31 138.7 98 71.4
Actinidia19084 Actinidia chinensis HOM05D005070 ORTHO05D005987 3.4e-31 138.3 102 69.6
Prupe.5G178000 Prunus persica HOM05D005070 ORTHO05D005987 3.4e-31 138.3 99 70.7
GSVIVG01007813001 Vitis vinifera HOM05D005070 ORTHO05D005987 7.5e-31 137.1 97 74.2
Dinv20690 Davidia involucrata HOM05D005070 ORTHO05D005987 9.8e-31 136.7 98 71.4
Actinidia33046 Actinidia chinensis HOM05D005070 ORTHO05D005987 1.3e-30 136.3 98 74.5
Dinv09171 Davidia involucrata HOM05D005070 ORTHO05D005987 1.3e-30 136.3 104 67.3
Cfa019078 Carpinus fangiana HOM05D005070 ORTHO05D005987 2.8e-30 135.2 100 69.0
TWI32G1183 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 3.7e-30 134.8 99 67.7
Oeu022174.1 Olea europaea HOM05D005070 ORTHO05D005987 4.8e-30 134.4 98 71.4
CiPaw.12G023900 Carya illinoinensis HOM05D005070 ORTHO05D005987 6.3e-30 134.0 99 68.7
Manes.06G101800 Manihot esculenta HOM05D005070 ORTHO05D005987 8.3e-30 133.7 97 72.2
CSS0038581 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 1.1e-29 133.3 98 69.4
MSTRG.4382 Avicennia marina HOM05D005070 ORTHO05D005987 1.4e-29 132.9 97 74.2
TAR371G1219 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.4e-29 132.9 97 69.1
Migut.D01788 Erythranthe guttata HOM05D005070 ORTHO05D005987 5.4e-29 131.0 98 72.4
QL10p013399 Quercus lobata HOM05D005070 ORTHO05D005987 5.4e-29 131.0 99 67.7
arahy.Tifrunner.gnm1.ann1.LKK6LB Arachis hypogaea HOM05D005070 ORTHO05D005987 9.1e-29 130.2 97 66.0
MD06G1180200 Malus domestica HOM05D005070 ORTHO05D005987 9.1e-29 130.2 100 68.0
Manes.06G101600 Manihot esculenta HOM05D005070 ORTHO05D005987 9.1e-29 130.2 97 71.1
TWI34G0241 Tripterygium wilfordii HOM05D005070 ORTHO05D005987 9.1e-29 130.2 99 67.7
arahy.Tifrunner.gnm1.ann1.FI7QKA Arachis hypogaea HOM05D005070 ORTHO05D005987 1.2e-28 129.8 96 66.7
MSTRG.9667 Avicennia marina HOM05D005070 ORTHO05D005987 1.6e-28 129.4 98 72.4
TAR629G1223 Trochodendron aralioides HOM05D005070 ORTHO05D005987 2.7e-28 128.6 97 68.0
CsaV3_1G001750 Cucumis sativus L. HOM05D005070 ORTHO05D005987 3.5e-28 128.3 99 68.7
Solyc06g073360.3 Solanum lycopersicum HOM05D005070 ORTHO05D005987 5.9e-28 127.5 97 72.2
Sopen06g029740 Solanum pennellii HOM05D005070 ORTHO05D005987 5.9e-28 127.5 97 72.2
Nitab4.5_0003132g0040 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.0e-27 126.7 97 72.2
Ciclev10024649m.g Citrus clementina HOM05D005070 ORTHO05D005987 1.3e-27 126.3 97 71.1
Nitab4.5_0005570g0060 Nicotiana tabacum HOM05D005070 ORTHO05D005987 1.7e-27 125.9 95 72.6
Aqoxy3G03084 Aquilegia oxysepala HOM05D005070 ORTHO05D005987 2.3e-27 125.6 96 69.8
Nn3g16981 Nelumbo nucifera HOM05D005070 ORTHO05D005987 2.9e-27 125.2 101 61.4
Cc04_g13080 Coffea canephora HOM05D005070 ORTHO05D005987 3.8e-27 124.8 97 69.1
AT5G62575 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 5.0e-27 124.4 93 64.5
Sc04g0002050 Simmondsia chinensis HOM05D005070 ORTHO05D005987 5.0e-27 124.4 99 64.6
RcHm_v2.0_Chr7g0179591 Rosa chinensis HOM05D005070 ORTHO05D005987 6.5e-27 124.0 100 63.0
Psat5g113840 Pisum sativum HOM05D005070 ORTHO05D005987 8.6e-27 123.6 96 66.7
Potri.012G077101 Populus trichocarpa HOM05D005070 ORTHO05D005987 8.6e-27 123.6 92 70.7
Potri.015G072100 Populus trichocarpa HOM05D005070 ORTHO05D005987 8.6e-27 123.6 99 67.7
Ca_16205_v3 Cicer arietinum L. HOM05D000612 ORTHO05D005987 1.1e-26 123.2 96 64.6
Phvul.009G181300 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 1.1e-26 123.2 96 64.6
Duzib068G0746 Durio zibethinus HOM05D005070 ORTHO05D005987 1.5e-26 122.9 99 64.6
Eucgr.B00344 Eucalyptus grandis HOM05D005070 ORTHO05D005987 1.9e-26 122.5 100 64.0
Thhalv10005150m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 2.5e-26 122.1 99 61.6
Medtr3g078310 Medicago truncatula HOM05D005070 ORTHO05D005987 4.2e-26 121.3 96 64.6
TPR.G15088 Trifolium pratense HOM05D005070 ORTHO05D005987 4.2e-26 121.3 97 63.9
Lalb_Chr23g0273091 Lupinus albus HOM05D005070 ORTHO05D005987 5.5e-26 120.9 96 63.5
Phvul.009G149950 Phaseolus vulgaris HOM05D005070 ORTHO05D005987 5.5e-26 120.9 96 64.6
Atru.chr9.2417 Acer truncatum HOM05D005070 ORTHO05D005987 7.2e-26 120.6 95 69.5
CARHR156530 Cardamine hirsuta HOM05D005070 ORTHO05D005987 7.2e-26 120.6 102 62.7
Peaxi162Scf00375g00418 Petunia axillaris HOM05D005070 ORTHO05D005987 7.2e-26 120.6 97 68.0
Sed0013294 Sechium edule HOM05D005070 ORTHO05D005987 7.2e-26 120.6 95 66.3
Oeu016348.1 Olea europaea HOM05D005070 ORTHO05D005987 9.5e-26 120.2 97 67.0
Carub.0005s1395 Capsella rubella HOM05D005070 ORTHO05D005987 1.2e-25 119.8 99 63.6
Thecc.03G005900 Theobroma cacao HOM05D005070 ORTHO05D005987 1.2e-25 119.8 99 61.6
THA.LOC104821444 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 2.8e-25 118.6 96 61.5
Nn4g22889 Nelumbo nucifera HOM05D005070 ORTHO05D005987 3.6e-25 118.2 99 62.6
Hund09411 Selenicereus undatus HOM05D005070 ORTHO05D005987 3.6e-25 118.2 102 60.8
unitig_0.g791 Utricularia gibba HOM05D005070 ORTHO05D005987 3.6e-25 118.2 98 63.3
Lj1g0020478 Lotus japonicus HOM05D005070 ORTHO05D005987 6.1e-25 117.5 95 62.1
Sed0009180 Sechium edule HOM05D005070 ORTHO05D005987 6.1e-25 117.5 101 61.4
FvH4_5g16500 Fragaria vesca HOM05D005070 ORTHO05D005987 8.0e-25 117.1 100 61.0
FAN04G3047 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.0e-25 117.1 100 61.0
FAN13G2199 Fragaria x ananassa HOM05D005070 ORTHO05D005987 8.0e-25 117.1 100 61.0
Thhalv10010853m.g Eutrema salsugineum HOM05D005070 ORTHO05D005987 1.4e-24 116.3 102 59.8
Glyma.04G179700 Glycine max HOM05D005070 ORTHO05D005987 1.4e-24 116.3 95 62.1
FAN18G1077 Fragaria x ananassa HOM05D005070 ORTHO05D005987 1.8e-24 115.9 100 60.0
Lalb_Chr11g0071141 Lupinus albus HOM05D005070 ORTHO05D005987 1.8e-24 115.9 96 61.5
Carub.0008s2325 Capsella rubella HOM05D005070 ORTHO05D005987 2.3e-24 115.5 99 57.6
THA.LOC104819433 Tarenaya hassleriana HOM05D005070 ORTHO05D005987 2.3e-24 115.5 90 62.2
MELO3C017115.2 Cucumis melo HOM05D005070 ORTHO05D005987 3.0e-24 115.2 95 65.3
Glyma.06G185100 Glycine max HOM05D005070 ORTHO05D005987 3.0e-24 115.2 95 61.1
PGR083G2074 Punica granatum HOM05D005070 ORTHO05D005987 3.0e-24 115.2 96 65.6
COL.COLO4_04329 Corchorus olitorius HOM05D005070 ORTHO05D005987 4.0e-24 114.8 99 61.6
Duzib205G1171 Durio zibethinus HOM05D005070 ORTHO05D005987 5.2e-24 114.4 99 60.6
CARHR276360 Cardamine hirsuta HOM05D005070 ORTHO05D005987 8.9e-24 113.6 92 59.8
Rhsim12G0162300 Rhododendron simsii HOM05D005070 ORTHO05D005987 1.2e-23 113.2 134 52.2
AL5G27130 Arabidopsis lyrata HOM05D005070 ORTHO05D005987 1.5e-23 112.8 99 62.6
Sabra12G0055200 Salix brachista HOM05D005070 ORTHO05D005987 1.5e-23 112.8 94 63.8
TPR.G17706 Trifolium pratense HOM05D005070 ORTHO05D005987 2.6e-23 112.1 96 60.4
BcaB01g00872 Brassica carinata HOM05D005070 ORTHO05D005987 3.4e-23 111.7 93 60.2
FAN08G0574 Fragaria x ananassa HOM05D005070 ORTHO05D005987 4.4e-23 111.3 100 59.0
Sp2g25760 Schrenkiella parvula HOM05D005070 ORTHO05D005987 4.4e-23 111.3 102 55.9
SGA_v2.0_scaffold7G04113 Striga asiatica HOM05D007129 ORTHO05D008680 4.4e-23 111.3 97 63.9
AT3G47833 Arabidopsis thaliana HOM05D005070 ORTHO05D005987 5.7e-23 110.9 94 67.0
Gorai.008G297700 Gossypium raimondii HOM05D005070 ORTHO05D005987 5.7e-23 110.9 99 57.6
BcaB02g10688 Brassica carinata HOM05D005070 ORTHO05D005987 7.5e-23 110.5 92 63.0
A06p19790 Brassica napus HOM05D005070 ORTHO05D005987 1.3e-22 109.8 93 60.2
BraA06t25059Z Brassica rapa HOM05D005070 ORTHO05D005987 1.3e-22 109.8 93 60.2
Gohir.D12G277200 Gossypium hirsutum HOM05D005070 ORTHO05D005987 1.3e-22 109.8 99 56.6
HanXRQChr09g0271731 Helianthus annuus HOM05D005070 ORTHO05D005987 1.3e-22 109.8 100 60.0
BolC3t19504H Brassica oleracea HOM05D005070 ORTHO05D005987 1.7e-22 109.4 93 59.1
BcaC01g01772 Brassica carinata HOM05D005070 ORTHO05D005987 2.8e-22 108.6 93 59.1
C03p72060 Brassica napus HOM05D005070 ORTHO05D005987 2.8e-22 108.6 93 59.1
Lsat_1_v5_gn_4_72681 Lactuca sativa HOM05D005070 ORTHO05D005987 2.8e-22 108.6 98 59.2
Gohir.A12G276360 Gossypium hirsutum HOM05D005070 ORTHO05D005987 6.3e-22 107.5 99 55.6
TAR622G0050 Trochodendron aralioides HOM05D005070 ORTHO05D005987 1.1e-21 106.7 70 72.9
Aa31LG4G16490 Aethionema arabicum HOM05D007129 ORTHO05D008680 1.4e-21 106.3 92 62.0
CDE10G1084 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 2.4e-21 105.5 104 53.8
HanXRQChr16g0503551 Helianthus annuus HOM05D005070 ORTHO05D005987 1.2e-20 103.2 100 55.0
BcaC01g02293 Brassica carinata HOM05D005070 ORTHO05D005987 3.5e-20 101.7 92 58.7
C03p66960 Brassica napus HOM05D005070 ORTHO05D005987 3.5e-20 101.7 92 58.7
BolC3t18969H Brassica oleracea HOM05D005070 ORTHO05D005987 3.5e-20 101.7 92 58.7
Hma1.2p1_1643F.1_g295260 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.5e-20 101.7 78 67.9
Hma1.2p1_2351F.1_g320497 Hydrangea macrophylla HOM05D005070 ORTHO05D005987 3.5e-20 101.7 78 67.9
arahy.Tifrunner.gnm1.ann1.K5B2QX Arachis hypogaea HOM05D005070 ORTHO05D005987 4.5e-20 101.3 104 52.9
MBI02_g26995_MAGBIO Magnolia biondii HOM05D005070 ORTHO05D005987 5.9e-20 100.9 90 55.6
arahy.Tifrunner.gnm1.ann1.HW74CG Arachis hypogaea HOM05D005070 ORTHO05D005987 7.8e-20 100.5 104 52.9
EL10Ac5g10819 Beta vulgaris HOM05D005070 ORTHO05D005987 2.9e-19 98.6 89 57.3
Haze_07448 Corylus avellana HOM05D005070 ORTHO05D005987 3.8e-19 98.2 78 65.4
ATR1149G117 Amborella trichopoda HOM05D005070 ORTHO05D005987 6.6e-19 97.4 72 68.1
ECA232G1832 Erigeron canadensis HOM05D005070 ORTHO05D005987 2.5e-18 95.5 67 65.7
CDE10G1207 Ceratophyllum demersum HOM05D005070 ORTHO05D005987 5.6e-18 94.4 83 57.8
ClCG06G016770 Citrullus lanatus HOM05D005070 ORTHO05D005987 5.6e-18 94.4 77 67.5
SalBow3G2397 Salvia bowleyana HOM05D005070 ORTHO05D005987 1.2e-17 93.2 101 55.4
DCAR_031298 Daucus carota HOM05D005070 ORTHO05D005987 1.6e-17 92.8 93 55.9
Psat7g153800 Pisum sativum HOM05D005070 ORTHO05D005987 4.7e-17 91.3 78 62.8
Psat7g156680 Pisum sativum HOM05D005070 ORTHO05D005987 2.3e-16 89.0 77 62.3
DCAR_026116 Daucus carota HOM05D000306 ORTHO05D005987 6.8e-16 87.4 77 57.1
AUR62008276 Chenopodium quinoa HOM05D005070 ORTHO05D005987 1.2e-15 86.7 97 48.5
Manes.14G069501 Manihot esculenta HOM05D005070 ORTHO05D005987 7.5e-15 84.0 98 51.0
HPP92_017066 Vanilla planifolia HOM05D005070 ORTHO05D005987 3.7e-14 81.6 91 47.3
PSO832G4075 Papaver somniferum HOM05D005070 ORTHO05D005987 1.6e-12 76.3 87 49.4
PSO478G4659 Papaver somniferum HOM05D005070 ORTHO05D005987 7.8e-12 73.9 91 46.2
PSO017G3759 Papaver somniferum HOM05D005070 ORTHO05D005987 1.0e-11 73.6 91 45.1
C08p19280 Brassica napus HOM05D000130 ORTHO05D000257 1.3e-11 73.2 67 61.2
PSO063G7000 Papaver somniferum HOM05D005070 ORTHO05D005987 2.3e-11 72.4 87 48.3
PGSC0003DMG400027010 Solanum tuberosum HOM05D000366 ORTHO05D001950 5.0e-11 71.2 67 61.2
HPP92_017347 Vanilla planifolia HOM05D005070 ORTHO05D005987 1.1e-10 70.1 61 55.7
SEGI_14877 Sequoiadendron giganteum HOM05D005070 ORTHO05D005987 1.5e-10 69.7 51 62.7
arahy.Tifrunner.gnm1.ann1.67M40U Arachis hypogaea HOM05D005070 ORTHO05D005987 2.5e-10 68.9 57 56.1
Mapoly0038s0062 Marchantia polymorpha HOM05D005070 ORTHO05D005987 3.3e-10 68.6 70 51.4
BolC8t49547H Brassica oleracea HOM05D000130 ORTHO05D000001 7.3e-10 67.4 57 61.4
Os09g0382500 Oryza sativa ssp. japonica HOM05D005070 ORTHO05D005987 9.5e-10 67.0 81 48.1
Zm00001eb311750 Zea mays HOM05D005070 ORTHO05D005987 3.6e-09 65.1 53 56.6
Zm00001eb098990 Zea mays HOM05D005070 ORTHO05D005987 1.1e-08 63.5 54 53.7
MBI18_g17201_MAGBIO Magnolia biondii HOM05D002807 ORTHO05D005987 2.0e-07 59.3 54 57.4
CBR_g34554 Chara braunii HOM05D005070 ORTHO05D005987 2.6e-07 58.9 49 59.2
CSS0046931 Camellia sinensis var. sinensis HOM05D005070 ORTHO05D005987 9.8e-07 57.0 36 77.8


User provided reference genes

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