Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0136 Cannabis sativa HOM05D006045 ORTHO05D007678 4.5e-242 840.9 436 100.0
Prupe.6G259100 Prunus persica HOM05D006045 ORTHO05D007678 7.8e-154 547.7 439 69.5
QL07p030118 Quercus lobata HOM05D006045 ORTHO05D007678 7.1e-147 524.6 438 64.6
QL07p030894 Quercus lobata HOM05D006045 ORTHO05D007678 2.7e-146 522.7 438 65.8
CiPaw.09G195700 Carya illinoinensis HOM05D006045 ORTHO05D007678 4.3e-144 515.4 437 65.0
TAR623G1560 Trochodendron aralioides HOM05D006045 ORTHO05D007678 1.8e-142 510.0 435 64.8
MD12G1145400 Malus domestica HOM05D006045 ORTHO05D007678 3.4e-141 505.8 381 71.1
Thecc.05G035700 Theobroma cacao HOM05D006045 ORTHO05D007678 3.2e-139 499.2 437 62.2
Gorai.009G406000 Gossypium raimondii HOM05D006045 ORTHO05D007678 4.6e-138 495.4 439 61.5
Gohir.A04G065300 Gossypium hirsutum HOM05D006045 ORTHO05D007678 1.9e-136 490.0 436 61.5
Ciclev10011734m.g Citrus clementina HOM05D006045 ORTHO05D007678 2.5e-136 489.6 445 60.0
Gohir.D04G102700 Gossypium hirsutum HOM05D006045 ORTHO05D007678 7.4e-136 488.0 439 60.6
Manes.09G092411 Manihot esculenta HOM05D006045 ORTHO05D007678 2.4e-134 483.0 438 60.0
Potri.002G091400 Populus trichocarpa HOM05D006045 ORTHO05D007678 1.1e-131 474.2 441 60.3
GSVIVG01034130001 Vitis vinifera HOM05D006045 ORTHO05D007678 1.4e-131 473.8 382 66.0
Eucgr.K03104 Eucalyptus grandis HOM05D006045 ORTHO05D007678 2.5e-131 473.0 413 61.7
PGR004G1833 Punica granatum HOM05D006045 ORTHO05D007678 2.5e-131 473.0 437 59.3
FvH4_6g13250 Fragaria vesca HOM05D006045 ORTHO05D007678 1.3e-129 467.2 452 60.6
MD04G1132700 Malus domestica HOM05D006045 ORTHO05D007678 3.9e-129 465.7 380 67.9
TWI77G0138 Tripterygium wilfordii HOM05D006045 ORTHO05D007678 5.7e-128 461.8 441 60.1
Nn2g11183 Nelumbo nucifera HOM05D006045 ORTHO05D007678 7.4e-128 461.5 437 58.6
RcHm_v2.0_Chr3g0466081 Rosa chinensis HOM05D006045 ORTHO05D007678 4.8e-127 458.8 451 60.3
FAN14G1932 Fragaria x ananassa HOM05D006045 ORTHO05D007678 6.3e-127 458.4 465 59.1
PGSC0003DMG400008825 Solanum tuberosum HOM05D006045 ORTHO05D007678 1.8e-126 456.8 437 59.7
Duzib106G0862 Durio zibethinus HOM05D006045 ORTHO05D007678 3.1e-126 456.1 439 57.6
CAN.G597.3 Capsicum annuum HOM05D006045 ORTHO05D007678 5.9e-125 451.8 412 60.4
FAN02G2147 Fragaria x ananassa HOM05D006045 ORTHO05D007678 2.2e-124 449.9 454 58.8
CSS0032526 Camellia sinensis var. sinensis HOM05D006045 ORTHO05D007678 5.0e-124 448.7 451 59.0
Sopen09g005740 Solanum pennellii HOM05D006045 ORTHO05D007678 5.0e-124 448.7 437 58.8
AUR62034450 Chenopodium quinoa HOM05D006045 ORTHO05D007678 8.5e-124 448.0 401 61.6
AUR62018119 Chenopodium quinoa HOM05D006045 ORTHO05D007678 1.2e-122 444.1 398 61.8
Haze_20828 Corylus avellana HOM05D006045 ORTHO05D007678 1.0e-121 441.0 381 63.5
Solyc09g011020.4 Solanum lycopersicum HOM05D006045 ORTHO05D007678 3.0e-121 439.5 387 63.0
Cfa017339 Carpinus fangiana HOM05D006045 ORTHO05D007678 1.8e-118 430.3 381 61.4
Sabra02G0072200 Salix brachista HOM05D006045 ORTHO05D007678 4.1e-118 429.1 441 56.0
PSO339G1759 Papaver somniferum HOM05D006045 ORTHO05D007678 6.9e-118 428.3 439 55.1
DCAR_028758 Daucus carota HOM05D006045 ORTHO05D007678 1.2e-117 427.6 451 56.1
Lsat_1_v5_gn_5_154000 Lactuca sativa HOM05D006045 ORTHO05D007678 1.0e-116 424.5 403 59.3
THA.LOC104816254 Tarenaya hassleriana HOM05D006045 ORTHO05D007678 1.0e-116 424.5 439 52.8
Oeu010102.1 Olea europaea HOM05D006045 ORTHO05D007678 3.8e-116 422.5 443 55.1
Cc06_g02350 Coffea canephora HOM05D006045 ORTHO05D007678 1.9e-115 420.2 390 60.0
MELO3C009242.2 Cucumis melo HOM05D006045 ORTHO05D007678 2.5e-115 419.9 441 55.1
ECA248G0328 Erigeron canadensis HOM05D006045 ORTHO05D007678 4.2e-115 419.1 440 53.9
AL6G11360 Arabidopsis lyrata HOM05D006045 ORTHO05D007678 1.2e-114 417.5 441 52.8
AT5G02130 Arabidopsis thaliana HOM05D006045 ORTHO05D007678 1.6e-114 417.2 441 52.6
vmacro08642 Vaccinium macrocarpon HOM05D006045 ORTHO05D007678 4.7e-114 415.6 394 58.6
Thhalv10013663m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 1.8e-113 413.7 436 53.0
EL10Ac2g03023 Beta vulgaris HOM05D006045 ORTHO05D007678 3.0e-113 412.9 401 59.1
Hund15247 Selenicereus undatus HOM05D006045 ORTHO05D007678 5.1e-113 412.1 448 53.1
MSTRG.19073 Avicennia marina HOM05D006045 ORTHO05D007678 2.6e-112 409.8 441 54.2
BolC9t60170H Brassica oleracea HOM05D006045 ORTHO05D007678 7.4e-112 408.3 437 52.4
BcaB01g06214 Brassica carinata HOM05D006045 ORTHO05D007678 1.7e-111 407.1 436 53.0
BraA03t09445Z Brassica rapa HOM05D006045 ORTHO05D007678 1.7e-111 407.1 439 53.1
HanXRQChr13g0406931 Helianthus annuus HOM05D006045 ORTHO05D007678 2.8e-111 406.4 398 58.0
C09p74360 Brassica napus HOM05D006045 ORTHO05D007678 8.2e-111 404.8 437 52.4
Sp6g40310 Schrenkiella parvula HOM05D006045 ORTHO05D007678 8.2e-111 404.8 436 52.8
BraA10t45376Z Brassica rapa HOM05D006045 ORTHO05D007678 1.1e-110 404.4 437 52.2
Sed0026133 Sechium edule HOM05D006045 ORTHO05D007678 1.8e-110 403.7 444 52.9
Migut.J00307 Erythranthe guttata HOM05D006045 ORTHO05D007678 3.5e-109 399.4 433 52.9
Aa31LG1G22600 Aethionema arabicum HOM05D006045 ORTHO05D007678 4.5e-109 399.1 451 51.4
A03p00550 Brassica napus HOM05D006045 ORTHO05D007678 5.9e-109 398.7 464 51.1
SHI12713 Sapria himalayana HOM05D006045 ORTHO05D007678 2.2e-108 396.7 410 54.4
CsaV3_3G034720 Cucumis sativus L. HOM05D006045 ORTHO05D007678 6.5e-108 395.2 441 52.6
CARHR211230 Cardamine hirsuta HOM05D006045 ORTHO05D007678 8.5e-108 394.8 437 51.3
Lj1g0013519 Lotus japonicus HOM05D006045 ORTHO05D007678 1.5e-107 394.0 388 57.0
Lj3g0020199 Lotus japonicus HOM05D006045 ORTHO05D007678 2.5e-107 393.3 440 52.5
ATR0559G357 Amborella trichopoda HOM05D006045 ORTHO05D007678 5.5e-107 392.1 393 56.5
Carub.0006s0097 Capsella rubella HOM05D006045 ORTHO05D007678 1.2e-106 391.0 436 51.6
Rhsim04G0158800 Rhododendron simsii HOM05D006045 ORTHO05D007678 8.0e-106 388.3 456 51.5
SGA_v2.0_scaffold126G33761 Striga asiatica HOM05D006045 ORTHO05D007678 2.3e-105 386.7 439 51.7
A10p33460 Brassica napus HOM05D006045 ORTHO05D007678 3.0e-105 386.3 470 48.5
Lalb_Chr03g0042401 Lupinus albus HOM05D006045 ORTHO05D007678 3.9e-105 386.0 447 51.5
CDE06G1975 Ceratophyllum demersum HOM05D006045 ORTHO05D007678 2.8e-103 379.8 400 55.5
MBI14_g08020_MAGBIO Magnolia biondii HOM05D006045 ORTHO05D007678 1.8e-102 377.1 390 56.2
Lj3A965G74 Lonicera japonica HOM05D006045 ORTHO05D007678 8.0e-98 361.7 302 64.6
arahy.Tifrunner.gnm1.ann1.H3QXFP Arachis hypogaea HOM05D006045 ORTHO05D007678 2.3e-97 360.1 406 50.7
Ca_07336_v3 Cicer arietinum L. HOM05D006045 ORTHO05D007678 6.3e-95 352.1 388 51.8
Medtr7g062630 Medicago truncatula HOM05D006045 ORTHO05D007678 1.1e-94 351.3 388 51.0
Psat3g136040 Pisum sativum HOM05D006045 ORTHO05D007678 4.5e-93 345.9 388 50.3
BcaB01g06067 Brassica carinata HOM05D006045 ORTHO05D007678 4.2e-91 339.3 436 47.5
Sc22g0004440 Simmondsia chinensis HOM05D006045 ORTHO05D007678 5.5e-91 339.0 320 61.2
Glyma.18G185200 Glycine max HOM05D006045 ORTHO05D007678 2.6e-88 330.1 394 49.7
Nitab4.5_0000705g0060 Nicotiana tabacum HOM05D006045 ORTHO05D007678 8.3e-87 325.1 339 54.9
Nitab4.5_0003394g0010 Nicotiana tabacum HOM05D006045 ORTHO05D007678 4.1e-86 322.8 344 55.2
C03p00810 Brassica napus HOM05D006045 ORTHO05D007678 2.7e-85 320.1 446 44.6
Aqoxy1G00880 Aquilegia oxysepala HOM05D006045 ORTHO05D007678 5.0e-84 315.8 329 55.3
ClCG10G021320 Citrullus lanatus HOM05D006045 ORTHO05D007678 2.5e-83 313.5 551 41.9
Peaxi162Scf00527g00742 Petunia axillaris HOM05D006045 ORTHO05D007678 7.2e-83 312.0 350 51.4
VMungo1383G2703 Vigna mungo HOM05D006045 ORTHO05D007678 6.1e-82 308.9 349 52.4
arahy.Tifrunner.gnm1.ann1.FBGI2B Arachis hypogaea HOM05D006045 ORTHO05D007678 2.9e-79 300.1 322 51.2
CiPaw.09G197100 Carya illinoinensis HOM05D006045 ORTHO05D007678 3.7e-79 299.7 216 72.7
SalBow1G6939 Salvia bowleyana HOM05D006045 ORTHO05D007678 1.6e-77 294.3 350 51.7
SEGI_25878 Sequoiadendron giganteum HOM05D006045 ORTHO05D007678 1.5e-75 287.7 416 41.6
Os05g0457700 Oryza sativa ssp. japonica HOM05D006045 ORTHO05D007678 6.1e-74 282.3 400 44.0
FAN05G2873 Fragaria x ananassa HOM05D006045 ORTHO05D007678 9.8e-72 275.0 201 72.1
Medtr6g445490 Medicago truncatula HOM05D006045 ORTHO05D007678 3.3e-67 260.0 431 41.3
TPR.G18356 Trifolium pratense HOM05D006045 ORTHO05D007678 5.6e-67 259.2 287 50.2
HPP92_014298 Vanilla planifolia HOM05D006045 ORTHO05D007678 3.4e-64 250.0 249 53.8
Rhsim04G0160900 Rhododendron simsii HOM05D006045 ORTHO05D007678 7.1e-62 242.3 395 43.5
Atru.chr8.2013 Acer truncatum HOM05D006045 ORTHO05D007678 5.1e-52 209.5 446 36.3
Phvul.008G118100 Phaseolus vulgaris HOM05D006045 ORTHO05D007678 2.4e-49 200.7 323 42.4
PSO063G1044 Papaver somniferum HOM05D006045 ORTHO05D007678 1.9e-46 191.0 246 44.7
SMO361G0160 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 8.7e-44 182.2 390 35.6
SMO361G0306 Selaginella moellendorffii HOM05D006045 ORTHO05D007678 1.6e-42 177.9 391 35.5
Pp3c17_13640 Physcomitrium patens HOM05D006045 ORTHO05D007678 2.1e-42 177.6 367 32.7
Mapoly0002s0152 Marchantia polymorpha HOM05D006045 ORTHO05D007678 5.8e-40 169.5 407 32.4
Gohir.A04G065314 Gossypium hirsutum HOM05D006045 ORTHO05D007678 5.4e-38 162.9 120 69.2
COL.COLO4_14760 Corchorus olitorius HOM05D006045 ORTHO05D007678 1.6e-34 151.4 295 36.9
Cpa.g.sc169.5 Carica papaya HOM05D006045 ORTHO05D007678 8.4e-31 139.0 135 54.1
MD07G1261700 Malus domestica HOM05D006045 ORTHO05D007678 2.4e-30 137.5 125 62.4
CBR_g8766 Chara braunii HOM05D006045 ORTHO05D007678 4.6e-29 133.3 469 27.7
Hma1.2p1_0028F.1_g017940 Hydrangea macrophylla HOM05D006045 ORTHO05D007678 6.2e-26 122.9 94 66.0
PSO339G4427 Papaver somniferum HOM05D006045 ORTHO05D007678 5.8e-24 116.3 168 44.0
HPP92_014299 Vanilla planifolia HOM05D006045 ORTHO05D007678 2.0e-16 91.3 103 50.5
Zm00001eb351230 Zea mays HOM05D006045 ORTHO05D007678 2.9e-15 87.4 245 30.2
Lsat_1_v5_gn_1_108300 Lactuca sativa HOM05D000747 ORTHO05D015226 3.1e-09 67.4 58 55.2
Thhalv10015964m.g Eutrema salsugineum HOM05D006045 ORTHO05D007678 3.2e-06 57.4 158 32.3


User provided reference genes

Program Settings