Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.0e-277 959.5 509 100.0
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 1.2e-262 909.4 510 92.9
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 1.1e-260 902.9 510 92.2
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 3.3e-260 901.4 510 92.2
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 7.3e-260 900.2 509 91.9
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 9.5e-260 899.8 511 91.4
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 2.8e-259 898.3 511 91.0
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 3.6e-259 897.9 511 91.6
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 3.6e-259 897.9 509 91.2
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 4.7e-259 897.5 510 91.2
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 8.0e-259 896.7 510 91.2
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 1.1e-258 896.3 509 91.6
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 5.2e-258 894.0 511 91.2
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 5.2e-258 894.0 510 90.8
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 1.5e-257 892.5 511 91.2
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 4.4e-257 891.0 511 91.0
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 5.8e-257 890.6 510 91.0
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 5.8e-257 890.6 510 91.2
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 1.3e-256 889.4 510 91.0
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 1.3e-256 889.4 509 90.4
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 1.7e-256 889.0 510 90.0
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 2.2e-256 888.6 510 90.4
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 3.7e-256 887.9 509 90.2
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 8.3e-256 886.7 510 90.6
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 1.1e-255 886.3 509 90.8
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.4e-255 885.9 510 90.2
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 2.4e-255 885.2 510 89.8
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 2.4e-255 885.2 510 89.8
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 2.4e-255 885.2 510 89.8
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 4.1e-255 884.4 510 89.4
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 5.4e-255 884.0 511 89.6
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 7.0e-255 883.6 510 90.0
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 7.0e-255 883.6 510 89.8
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 9.2e-255 883.2 509 89.4
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.2e-254 882.9 510 89.6
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 1.2e-254 882.9 510 89.8
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 1.6e-254 882.5 510 89.8
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 1.6e-254 882.5 510 89.6
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 2.0e-254 882.1 510 89.4
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 2.0e-254 882.1 510 89.8
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 3.5e-254 881.3 510 89.4
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 88.8
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 4.6e-254 880.9 511 90.4
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 6.0e-254 880.6 509 90.0
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 7.8e-254 880.2 512 90.0
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 7.8e-254 880.2 510 88.8
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 1.7e-253 879.0 510 88.8
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 3.0e-253 878.2 510 88.6
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 3.9e-253 877.9 510 88.6
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 5.0e-253 877.5 510 90.0
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 6.6e-253 877.1 510 89.2
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 8.6e-253 876.7 510 89.0
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 1.1e-252 876.3 510 89.4
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 4.3e-252 874.4 510 88.4
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 5.6e-252 874.0 511 87.9
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 5.6e-252 874.0 526 87.3
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 5.6e-252 874.0 509 88.4
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 5.6e-252 874.0 509 90.0
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 7.3e-252 873.6 510 88.8
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 9.5e-252 873.2 510 88.6
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.2e-251 872.8 509 89.2
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 1.2e-251 872.8 510 89.4
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 1.2e-251 872.8 510 88.6
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 1.2e-251 872.8 510 87.8
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 88.6
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 88.6
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 2.8e-251 871.7 510 88.8
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 3.6e-251 871.3 511 89.0
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 1.1e-250 869.8 509 89.4
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 1.4e-250 869.4 510 87.6
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 1.8e-250 869.0 510 87.6
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 3.1e-250 868.2 509 88.8
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 5.2e-250 867.5 510 87.6
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 6.8e-250 867.1 510 87.6
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 6.8e-250 867.1 509 87.6
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 1.5e-249 865.9 510 87.5
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 2.6e-249 865.1 510 87.8
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.4e-249 864.8 509 88.0
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 5.8e-249 864.0 510 87.5
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 7.5e-249 863.6 509 88.6
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 9.9e-249 863.2 511 88.1
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 9.9e-249 863.2 509 87.6
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 9.9e-249 863.2 509 87.6
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 9.9e-249 863.2 509 87.6
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 87.8
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 4.9e-248 860.9 510 88.2
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.4e-247 859.4 509 87.4
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 2.4e-247 858.6 511 88.1
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 3.2e-247 858.2 511 88.1
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.1e-247 857.8 510 87.6
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 4.6e-246 854.4 511 87.7
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 2.3e-245 852.0 510 86.5
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 3.9e-245 851.3 512 87.5
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 5.1e-245 850.9 510 87.5
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 6.6e-245 850.5 510 85.9
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 8.6e-245 850.1 509 86.2
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 1.9e-244 849.0 510 85.1
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 3.3e-244 848.2 499 88.8
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 3.6e-243 844.7 549 81.6
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 6.2e-243 844.0 510 85.3
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 6.8e-242 840.5 494 88.3
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 4.4e-241 837.8 510 85.5
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 4.4e-241 837.8 510 85.5
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 4.4e-241 837.8 512 85.9
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 5.8e-241 837.4 510 85.3
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 1.3e-240 836.3 510 85.3
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.3e-240 836.3 494 89.7
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 1.7e-240 835.9 509 83.9
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 1.7e-240 835.9 494 87.4
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 3.2e-239 831.6 510 83.9
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 4.1e-239 831.2 524 83.4
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.5e-238 828.2 493 87.2
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 7.8e-238 827.0 472 92.4
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 1.0e-237 826.6 505 86.7
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 1.7e-237 825.9 493 88.0
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 3.9e-237 824.7 479 88.9
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 5.6e-236 820.8 556 80.0
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 5.4e-231 804.3 547 78.2
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 7.8e-230 800.4 510 80.4
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 6.6e-229 797.3 511 81.2
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 5.6e-228 794.3 509 81.7
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 1.1e-226 790.0 510 79.8
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 2.6e-225 785.4 511 80.4
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 4.5e-225 784.6 512 82.0
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 5.8e-225 784.3 509 81.5
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.9e-225 783.5 524 80.9
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 9.9e-225 783.5 524 80.9
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 8.4e-224 780.4 511 80.0
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 5.5e-215 751.1 440 88.0
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 4.5e-209 731.5 472 84.3
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 2.9e-208 728.8 511 77.5
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 3.0e-205 718.8 503 76.9
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 9.7e-204 713.8 413 90.6
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.9e-199 699.5 509 74.7
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 1.0e-192 677.2 514 66.5
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.5e-188 663.3 503 69.6
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 2.9e-184 649.0 375 89.9
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 5.2e-181 638.3 468 72.6
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.5e-175 620.2 514 61.1
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 7.0e-170 601.3 522 61.5
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 7.0e-170 601.3 511 62.0
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 9.1e-170 600.9 364 85.4
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 3.5e-169 599.0 364 87.1
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.7e-166 588.6 494 60.9
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.5e-164 583.6 379 80.5
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 2.0e-161 573.2 505 65.0
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 3.0e-157 559.3 346 84.7
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 6.8e-157 558.1 325 90.2
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 6.3e-155 551.6 499 55.7
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 7.3e-151 538.1 456 68.6
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 7.5e-148 528.1 307 91.2
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 4.1e-138 495.7 284 91.9
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 2.6e-132 476.5 383 63.7
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.7e-121 439.9 254 89.4
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 2.0e-116 423.7 516 47.5
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.3e-112 411.0 245 88.2
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 2.9e-107 393.3 485 45.2
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 6.4e-107 392.1 386 56.5
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 8.7e-104 381.7 279 73.8
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 2.3e-96 357.1 520 39.2
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.3e-79 299.7 199 81.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.3e-72 277.3 343 48.7
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 2.2e-70 270.8 502 39.8
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.5e-58 231.5 288 47.6
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 4.2e-58 229.9 144 82.6
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 2.3e-56 224.2 365 42.7
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 6.1e-49 199.5 117 82.1
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 8.3e-46 189.1 206 54.4
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.3e-43 181.8 150 72.0
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 1.9e-42 177.9 197 52.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 2.0e-36 157.9 106 78.3
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.2e-30 137.9 119 59.7
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 7.8e-28 129.4 82 84.1
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 3.2e-21 107.5 156 47.4
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 3.0e-11 74.3 63 60.3
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 1.1e-08 65.9 37 83.8
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 5.2e-08 63.5 85 51.8


User provided reference genes

Program Settings