Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0082 Cannabis sativa HOM05D005021 ORTHO05D006824 0.0e+00 2733.0 1384 100.0
RcHm_v2.0_Chr5g0020301 Rosa chinensis HOM05D005021 ORTHO05D006824 0.0e+00 2434.8 1388 88.3
Prupe.4G113100 Prunus persica HOM05D005021 ORTHO05D006824 0.0e+00 2426.0 1389 88.0
FvH4_3g12410 Fragaria vesca HOM05D005021 ORTHO05D006824 0.0e+00 2418.7 1388 88.1
QL11p016313 Quercus lobata HOM05D005021 ORTHO05D006824 0.0e+00 2404.4 1388 87.0
Cfa000703 Carpinus fangiana HOM05D005021 ORTHO05D006824 0.0e+00 2402.5 1389 86.8
MD10G1231300 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2393.6 1389 87.3
CiPaw.10G064100 Carya illinoinensis HOM05D005021 ORTHO05D006824 0.0e+00 2380.1 1388 85.9
FAN21G1452 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2375.5 1388 87.0
Potri.012G124400 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2372.8 1390 85.0
Dinv25918 Davidia involucrata HOM05D005021 ORTHO05D006824 0.0e+00 2371.3 1389 85.2
Sabra12G0094200 Salix brachista HOM05D005021 ORTHO05D006824 0.0e+00 2370.5 1390 85.0
COL.COLO4_17653 Corchorus olitorius HOM05D005021 ORTHO05D006824 0.0e+00 2369.3 1389 84.8
MD05G1250500 Malus domestica HOM05D005021 ORTHO05D006824 0.0e+00 2366.3 1389 86.5
Atru.chr10.559 Acer truncatum HOM05D005021 ORTHO05D006824 0.0e+00 2357.4 1388 84.6
CSS0004737 Camellia sinensis var. sinensis HOM05D005021 ORTHO05D006824 0.0e+00 2356.6 1390 85.0
Thecc.02G008800 Theobroma cacao HOM05D005021 ORTHO05D006824 0.0e+00 2356.6 1389 84.8
Gorai.002G164100 Gossypium raimondii HOM05D005021 ORTHO05D006824 0.0e+00 2353.6 1389 84.7
Gohir.A01G141263 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2352.0 1389 84.5
Ciclev10014047m.g Citrus clementina HOM05D005021 ORTHO05D006824 0.0e+00 2346.2 1388 84.6
Gohir.D01G132500 Gossypium hirsutum HOM05D005021 ORTHO05D006824 0.0e+00 2340.8 1389 84.4
Glyma.20G019300 Glycine max HOM05D005021 ORTHO05D006824 0.0e+00 2330.1 1391 83.5
FAN25G1951 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 2328.5 1404 84.8
Cpa.g.sc30.159 Carica papaya HOM05D005021 ORTHO05D006824 0.0e+00 2325.4 1400 83.1
GSVIVG01012103001 Vitis vinifera HOM05D005021 ORTHO05D006824 0.0e+00 2323.5 1394 83.4
Haze_06074 Corylus avellana HOM05D005021 ORTHO05D006824 0.0e+00 2322.7 1433 82.8
ClCG01G009560 Citrullus lanatus HOM05D005021 ORTHO05D006824 0.0e+00 2321.2 1388 82.9
Phvul.002G097500 Phaseolus vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 2318.5 1391 83.3
Eucgr.D00052 Eucalyptus grandis HOM05D005021 ORTHO05D006824 0.0e+00 2317.0 1388 82.8
TWI38G0923 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2312.0 1389 83.1
Psat7g129680 Pisum sativum HOM05D005021 ORTHO05D006824 0.0e+00 2310.8 1391 82.8
Ca_18756_v3 Cicer arietinum L. HOM05D005021 ORTHO05D006824 0.0e+00 2308.9 1391 82.7
TPR.G38288 Trifolium pratense HOM05D005021 ORTHO05D006824 0.0e+00 2303.9 1391 82.5
Lj4g0005220 Lotus japonicus HOM05D005021 ORTHO05D006824 0.0e+00 2303.1 1393 83.1
TWI38G0776 Tripterygium wilfordii HOM05D005021 ORTHO05D006824 0.0e+00 2301.9 1389 83.0
TAR626G1325 Trochodendron aralioides HOM05D005021 ORTHO05D006824 0.0e+00 2300.0 1388 82.8
Medtr4g084140 Medicago truncatula HOM05D005021 ORTHO05D006824 0.0e+00 2299.2 1393 82.4
MELO3C021737.2 Cucumis melo HOM05D005021 ORTHO05D006824 0.0e+00 2293.5 1389 82.4
CsaV3_1G046230 Cucumis sativus L. HOM05D005021 ORTHO05D006824 0.0e+00 2290.4 1388 82.1
Sed0001856 Sechium edule HOM05D005021 ORTHO05D006824 0.0e+00 2286.5 1388 82.5
arahy.Tifrunner.gnm1.ann1.79RC6W Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2282.3 1482 78.4
Duzib248G0067 Durio zibethinus HOM05D005021 ORTHO05D006824 0.0e+00 2277.3 1345 84.4
Solyc02g068720.3 Solanum lycopersicum HOM05D005021 ORTHO05D006824 0.0e+00 2276.5 1390 81.2
Lalb_Chr16g0385181 Lupinus albus HOM05D005021 ORTHO05D006824 0.0e+00 2275.7 1392 81.6
Sopen02g017890 Solanum pennellii HOM05D005021 ORTHO05D006824 0.0e+00 2270.0 1390 81.2
Cc09_g06010 Coffea canephora HOM05D005021 ORTHO05D006824 0.0e+00 2266.1 1389 81.7
Migut.M01986 Erythranthe guttata HOM05D005021 ORTHO05D006824 0.0e+00 2257.3 1388 81.0
Nitab4.5_0001288g0150 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2251.5 1389 80.8
Potri.015G124500 Populus trichocarpa HOM05D005021 ORTHO05D006824 0.0e+00 2249.6 1391 81.7
Nitab4.5_0007745g0040 Nicotiana tabacum HOM05D005021 ORTHO05D006824 0.0e+00 2239.5 1401 80.1
CAN.G149.8 Capsicum annuum HOM05D005021 ORTHO05D006824 0.0e+00 2238.8 1402 79.4
Oeu060353.1 Olea europaea HOM05D005021 ORTHO05D006824 0.0e+00 2233.0 1409 79.7
PGR004G0612 Punica granatum HOM05D005021 ORTHO05D006824 0.0e+00 2233.0 1380 80.9
DCAR_003775 Daucus carota HOM05D005021 ORTHO05D006824 0.0e+00 2227.6 1389 80.6
Nn7g38248 Nelumbo nucifera HOM05D005021 ORTHO05D006824 0.0e+00 2224.1 1421 79.6
arahy.Tifrunner.gnm1.ann1.59QZXR Arachis hypogaea HOM05D005021 ORTHO05D006824 0.0e+00 2219.5 1485 76.5
Carub.0004s1679 Capsella rubella HOM05D005021 ORTHO05D006824 0.0e+00 2219.1 1407 79.8
AL4G31120 Arabidopsis lyrata HOM05D005021 ORTHO05D006824 0.0e+00 2218.0 1404 80.0
HanXRQChr14g0447451 Helianthus annuus HOM05D005021 ORTHO05D006824 0.0e+00 2211.0 1388 80.0
ECA238G3003 Erigeron canadensis HOM05D005021 ORTHO05D006824 0.0e+00 2207.6 1389 80.2
THA.LOC104798554 Tarenaya hassleriana HOM05D005021 ORTHO05D006824 0.0e+00 2207.2 1398 78.9
Aa31LG9G16120 Aethionema arabicum HOM05D005021 ORTHO05D006824 0.0e+00 2203.3 1418 78.3
Thhalv10016146m.g Eutrema salsugineum HOM05D005021 ORTHO05D006824 0.0e+00 2199.1 1406 79.1
A05p10630 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2197.5 1402 79.0
BcaB02g09478 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2193.3 1403 78.9
BraA05t20004Z Brassica rapa HOM05D005021 ORTHO05D006824 0.0e+00 2192.9 1403 78.8
SalBow8G3018 Salvia bowleyana HOM05D005021 ORTHO05D006824 0.0e+00 2189.8 1393 78.6
BolC4t22962H Brassica oleracea HOM05D005021 ORTHO05D006824 0.0e+00 2189.1 1403 78.7
C04p13730 Brassica napus HOM05D005021 ORTHO05D006824 0.0e+00 2187.9 1403 78.5
Aqoxy1G01424 Aquilegia oxysepala HOM05D005021 ORTHO05D006824 0.0e+00 2184.5 1389 79.2
AT2G35110 Arabidopsis thaliana HOM05D005021 ORTHO05D006824 0.0e+00 2166.3 1368 79.8
BcaB02g09480 Brassica carinata HOM05D005021 ORTHO05D006824 0.0e+00 2162.9 1413 77.8
Manes.16G055900 Manihot esculenta HOM05D005021 ORTHO05D006824 0.0e+00 2149.8 1254 85.6
PSO675G8902 Papaver somniferum HOM05D005021 ORTHO05D006824 0.0e+00 2144.4 1386 77.3
Lj1A1146G59 Lonicera japonica HOM05D005021 ORTHO05D006824 0.0e+00 2139.8 1415 77.5
Hma1.2p1_1005F.1_g246940 Hydrangea macrophylla HOM05D005021 ORTHO05D006824 0.0e+00 2083.5 1223 84.7
vmacro03526 Vaccinium macrocarpon HOM05D005021 ORTHO05D006824 0.0e+00 2072.7 1698 65.5
RhsimUnG0043400 Rhododendron simsii HOM05D005021 ORTHO05D006824 0.0e+00 2004.2 1302 78.2
AUR62037395 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1985.7 1350 74.3
Hund09140 Selenicereus undatus HOM05D005021 ORTHO05D006824 0.0e+00 1981.1 1347 74.5
AUR62041742 Chenopodium quinoa HOM05D005021 ORTHO05D006824 0.0e+00 1980.3 1344 74.3
SGA_v2.0_scaffold175G39355 Striga asiatica HOM05D005021 ORTHO05D006824 0.0e+00 1937.2 1372 72.9
EL10Ac9g20953 Beta vulgaris HOM05D005021 ORTHO05D006824 0.0e+00 1931.4 1403 70.6
unitig_748.g8077 Utricularia gibba HOM05D005021 ORTHO05D006824 0.0e+00 1930.6 1334 72.9
Os08g0544500 Oryza sativa ssp. japonica HOM05D005021 ORTHO05D006824 0.0e+00 1919.4 1379 69.7
Sc17g0003700 Simmondsia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1911.0 1185 79.8
Zm00001eb405230 Zea mays HOM05D005021 ORTHO05D006824 0.0e+00 1865.9 1381 68.5
ATR0752G031 Amborella trichopoda HOM05D005021 ORTHO05D006824 0.0e+00 1855.5 1388 67.1
Ah.01g015830 Amaranthus hybridus HOM05D005021 ORTHO05D006824 0.0e+00 1751.5 1530 61.6
Peaxi162Scf00149g00312 Petunia axillaris HOM05D005021 ORTHO05D006824 0.0e+00 1494.6 931 79.2
CDE05G3601 Ceratophyllum demersum HOM05D005021 ORTHO05D006824 0.0e+00 1476.8 1155 64.4
Sp4g17340 Schrenkiella parvula HOM05D005021 ORTHO05D006824 0.0e+00 1428.7 821 87.0
Mapoly0087s0075 Marchantia polymorpha HOM05D005021 ORTHO05D006824 0.0e+00 1410.6 1369 52.8
Lsat_1_v5_gn_2_63641 Lactuca sativa HOM05D005021 ORTHO05D006824 0.0e+00 1398.3 978 73.4
Pp3c11_1080 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1354.7 1362 51.0
Pp3c1_6150 Physcomitrium patens HOM05D005021 ORTHO05D006824 0.0e+00 1350.1 1359 50.3
SMO367G0195 Selaginella moellendorffii HOM05D005021 ORTHO05D006824 0.0e+00 1334.3 1341 51.0
FAN16G3288 Fragaria x ananassa HOM05D005021 ORTHO05D006824 0.0e+00 1261.1 714 89.1
VMungo0251G0795 Vigna mungo HOM05D005021 ORTHO05D006824 0.0e+00 1216.1 762 79.7
CARHR129260 Cardamine hirsuta HOM05D005021 ORTHO05D006824 0.0e+00 1208.4 819 74.7
HPP92_017169 Vanilla planifolia HOM05D005021 ORTHO05D006824 0.0e+00 1206.0 882 67.8
Actinidia33677 Actinidia chinensis HOM05D005021 ORTHO05D006824 0.0e+00 1175.6 792 74.7
VMungo0251G3115 Vigna mungo HOM05D005021 ORTHO05D006824 1.9e-294 1016.5 588 85.7
AagrBONN_evm.TU.Sc2ySwM_344.1422 Anthoceros agrestis HOM05D005021 ORTHO05D006824 8.2e-282 974.5 820 58.8
Potri.015G123900 Populus trichocarpa HOM05D005021 ORTHO05D006824 2.7e-256 889.8 602 75.1
QL11p016288 Quercus lobata HOM05D005021 ORTHO05D006824 4.8e-221 772.7 510 77.3
Oeu060352.1 Olea europaea HOM05D005021 ORTHO05D006824 1.2e-216 758.1 480 80.2
SHI31491 Sapria himalayana HOM05D005021 ORTHO05D006824 7.7e-195 685.6 540 64.4
CBR_g30692 Chara braunii HOM05D005021 ORTHO05D006824 9.4e-185 652.1 1479 29.6
BcaNung06473 Brassica carinata HOM05D005021 ORTHO05D006824 1.0e-159 568.9 538 58.6
HPP92_017178 Vanilla planifolia HOM05D005021 ORTHO05D006824 5.4e-148 530.0 365 73.2
SEGI_39898 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.5e-137 494.6 533 50.1
Medtr4g081610 Medicago truncatula HOM05D005021 ORTHO05D006824 1.8e-127 461.8 539 51.6
Psat0s5010g0080 Pisum sativum HOM05D005021 ORTHO05D006824 3.9e-106 391.0 275 70.9
Psat0s2371g0040 Pisum sativum HOM05D000434 ORTHO05D006824 1.1e-95 356.3 216 78.7
Medtr4g081600 Medicago truncatula HOM05D005021 ORTHO05D006824 6.7e-90 337.0 419 47.3
SEGI_00319 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.6e-86 325.1 192 80.7
Sp2g07020 Schrenkiella parvula HOM05D005021 ORTHO05D006824 4.8e-72 277.7 299 51.8
HPP92_017177 Vanilla planifolia HOM05D005021 ORTHO05D006824 6.5e-61 240.7 145 80.7
Psat0s5010g0040 Pisum sativum HOM05D005021 ORTHO05D004273 2.8e-56 225.3 139 77.7
SEGI_02164 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 2.0e-41 176.0 128 63.3
Potri.015G124200 Populus trichocarpa HOM05D005021 ORTHO05D006824 4.4e-41 174.9 134 71.6
BcaB07g31175 Brassica carinata HOM05D005021 ORTHO05D006824 2.1e-35 156.0 89 79.8
SEGI_41047 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 8.0e-35 154.1 160 50.6
Oeu003620.1 Olea europaea HOM05D005021 ORTHO05D006824 4.0e-34 151.8 116 69.8
Actinidia33676 Actinidia chinensis HOM05D005021 ORTHO05D006824 1.5e-33 149.8 94 80.9
QL05p044008 Quercus lobata HOM05D005021 ORTHO05D006824 6.4e-32 144.4 97 76.3
SHI31497 Sapria himalayana HOM05D005021 ORTHO05D006824 1.4e-31 143.3 112 65.2
GSVIVG01004787001 Vitis vinifera HOM05D000908 ORTHO05D000789 2.4e-31 142.5 83 78.3
SGA_v2.0_scaffold88G27325 Striga asiatica HOM05D005021 ORTHO05D006824 1.2e-30 140.2 109 63.3
MBI13_g07384_MAGBIO Magnolia biondii HOM05D005021 ORTHO05D018021 6.6e-29 134.4 101 68.3
Oeu048766.1 Olea europaea HOM05D001727 ORTHO05D001758 6.8e-26 124.4 86 72.1
Lsat_1_v5_gn_6_73941 Lactuca sativa HOM05D005021 ORTHO05D020826 2.0e-25 122.9 150 51.3
SHI31495 Sapria himalayana HOM05D005021 ORTHO05D006824 1.4e-23 116.7 173 41.0
Zm00001eb290420 Zea mays HOM05D005021 ORTHO05D006824 1.6e-22 113.2 98 54.1
Lsat_1_v5_gn_3_96441 Lactuca sativa HOM05D005021 ORTHO05D020826 2.0e-22 112.8 239 36.4
HPP92_017168 Vanilla planifolia HOM05D005021 ORTHO05D006824 6.0e-22 111.3 119 55.5
Psat5g003360 Pisum sativum HOM05D005021 ORTHO05D006824 1.3e-16 93.6 89 50.6
Potri.015G123001 Populus trichocarpa HOM05D005021 ORTHO05D006824 1.3e-16 93.6 59 81.4
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 4.9e-16 91.7 124 43.5
Oeu008861.1 Olea europaea HOM05D005021 ORTHO05D006824 1.4e-15 90.1 52 84.6
SEGI_05203 Sequoiadendron giganteum HOM05D005021 ORTHO05D006824 4.1e-15 88.6 50 90.0
Zm00001eb404970 Zea mays HOM05D005021 ORTHO05D006824 6.0e-14 84.7 104 46.2
Psat0s659g0040 Pisum sativum HOM05D005021 ORTHO05D023083 1.1e-12 80.5 106 43.4
Lsat_1_v5_gn_8_50200 Lactuca sativa HOM05D003846 ORTHO05D004726 7.3e-12 77.8 45 84.4
Psat1g136920 Pisum sativum HOM05D005021 ORTHO05D023083 2.8e-11 75.9 56 64.3
Psat2g014320 Pisum sativum HOM05D005021 ORTHO05D023083 2.8e-11 75.9 56 64.3
Lsat_1_v5_gn_2_58240 Lactuca sativa HOM05D003297 ORTHO05D020826 6.2e-11 74.7 42 88.1
Lsat_1_v5_gn_5_125381 Lactuca sativa HOM05D003846 ORTHO05D020826 9.9e-09 67.4 62 61.3
Lsat_1_v5_gn_4_123441 Lactuca sativa HOM05D003846 ORTHO05D004726 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_5_18841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_5_43841 Lactuca sativa HOM05D003846 ORTHO05D020826 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_7_114520 Lactuca sativa HOM05D003846 ORTHO05D004726 2.9e-08 65.9 44 75.0
Lsat_1_v5_gn_4_70420 Lactuca sativa HOM05D003297 ORTHO05D020826 5.4e-07 61.6 43 72.1
Medtr3g014450 Medicago truncatula HOM05D005021 ORTHO05D006824 2.7e-06 59.3 54 53.7


User provided reference genes

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