Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 2.6e-311 1071.2 550 100.0
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 2.8e-201 705.7 552 68.1
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 2.0e-194 682.9 553 67.3
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 1.7e-190 669.8 561 64.2
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 2.3e-187 659.4 554 64.8
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 9.8e-186 654.1 560 65.2
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.3e-185 653.7 554 63.7
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 4.3e-181 638.6 550 62.0
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 8.0e-180 634.4 687 54.6
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 4.4e-178 628.6 561 61.3
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 4.4e-178 628.6 548 62.8
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.1e-176 624.0 561 61.1
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 4.1e-176 622.1 546 60.1
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.0e-175 619.8 553 61.3
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 3.5e-175 619.0 547 61.6
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.7e-174 616.7 544 61.4
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.3e-174 616.3 544 61.8
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 1.5e-173 613.6 546 61.5
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 1.9e-173 613.2 545 61.3
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.8e-172 609.4 546 61.4
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 3.6e-172 609.0 552 58.7
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 4.0e-171 605.5 545 60.6
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 8.9e-171 604.4 549 59.7
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 2.0e-170 603.2 550 59.1
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 3.4e-170 602.4 559 59.4
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 3.7e-169 599.0 550 59.3
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.4e-168 596.3 546 60.1
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 4.1e-168 595.5 526 59.7
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 5.4e-168 595.1 547 60.0
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 8.6e-166 587.8 565 58.8
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.2e-164 583.9 556 57.6
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.1e-164 583.2 525 59.2
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 6.2e-164 581.6 586 55.8
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 8.1e-164 581.3 542 58.5
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 5.2e-163 578.6 546 57.1
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 6.8e-163 578.2 548 58.2
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 9.9e-162 574.3 547 58.1
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.3e-161 573.9 547 58.1
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 1.3e-161 573.9 547 57.6
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 7.1e-160 568.2 547 58.1
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 5.1e-158 562.0 550 57.1
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 5.1e-158 562.0 550 56.9
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 2.1e-156 556.6 547 56.9
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.1e-156 556.6 554 57.0
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 4.7e-156 555.4 468 61.5
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 1.1e-155 554.3 547 55.8
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 3.1e-155 552.7 547 56.9
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 9.9e-154 547.7 542 55.9
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.7e-153 547.0 549 55.4
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 2.4e-152 543.1 544 55.9
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 5.4e-152 542.0 544 54.8
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 7.8e-151 538.1 551 55.2
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 3.9e-150 535.8 544 55.5
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 5.1e-150 535.4 551 56.4
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 6.6e-150 535.0 544 54.8
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 1.9e-149 533.5 548 55.5
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 1.1e-147 527.7 545 54.5
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.4e-147 527.3 518 58.1
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 3.1e-147 526.2 545 54.5
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 3.1e-147 526.2 550 54.0
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 4.0e-147 525.8 546 54.2
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.3e-147 525.4 543 54.3
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 9.0e-147 524.6 550 54.5
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.0e-146 523.5 551 54.1
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 4.5e-146 522.3 545 53.9
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.7e-145 520.4 544 52.9
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 2.2e-145 520.0 543 54.0
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 3.8e-145 519.2 550 53.8
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 8.4e-145 518.1 544 53.5
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 8.4e-145 518.1 544 53.5
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 3.2e-144 516.2 541 54.9
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 4.2e-144 515.8 541 54.3
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 7.1e-144 515.0 549 52.6
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 9.3e-144 514.6 543 53.6
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 9.3e-144 514.6 546 54.0
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 2.7e-143 513.1 544 52.8
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 2.7e-143 513.1 542 54.8
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 7.9e-143 511.5 544 52.9
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 3.0e-142 509.6 440 61.8
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 6.7e-142 508.4 582 51.0
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 5.6e-141 505.4 555 53.7
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.1e-139 501.1 546 52.7
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 3.8e-137 492.7 548 51.8
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 9.3e-136 488.0 481 56.1
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 5.1e-134 482.3 549 50.6
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 6.7e-134 481.9 545 51.7
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.5e-133 480.7 389 62.7
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 1.4e-131 474.2 525 51.4
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 3.4e-130 469.5 485 51.5
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 1.0e-126 458.0 479 54.1
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.1e-123 448.0 544 48.5
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 3.2e-120 436.4 352 62.5
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.3e-118 430.3 465 51.6
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 6.3e-116 422.2 392 62.0
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 1.3e-113 414.5 557 47.4
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 5.0e-113 412.5 551 45.2
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.0e-102 378.3 324 62.0
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 1.5e-101 374.4 365 56.2
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 4.8e-100 369.4 557 42.2
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.1e-87 327.4 384 52.1
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 8.8e-86 322.0 425 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 5.7e-85 319.3 510 41.4
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 2.8e-84 317.0 281 61.6
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.0e-82 310.8 558 38.4
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 5.9e-82 309.3 574 36.8
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 2.0e-77 294.3 324 52.8
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 2.7e-74 283.9 397 43.8
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 3.5e-74 283.5 389 45.2
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 8.9e-70 268.9 218 63.3
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.1e-67 261.9 270 56.7
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 9.2e-67 258.8 276 51.4
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 1.6e-66 258.1 425 38.4
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.5e-64 250.8 277 51.6
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 2.9e-60 237.3 265 52.1
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 3.5e-58 230.3 165 69.1
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 1.1e-56 225.3 349 43.6
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.6e-53 214.2 264 49.6
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 5.8e-53 213.0 412 36.2
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.9e-51 208.0 160 63.1
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 7.3e-48 196.1 196 54.6
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 2.3e-41 174.5 151 59.6
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.8e-39 167.5 158 56.3
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 5.4e-35 153.3 268 39.6
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 9.3e-35 152.5 122 63.9
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.0e-33 149.1 119 61.3
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 3.9e-33 147.1 248 45.2
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 1.3e-31 142.1 136 54.4
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.3e-30 136.7 193 45.1
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.0e-29 134.8 235 41.3
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 1.1e-19 102.4 95 56.8
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 8.7e-17 92.8 192 38.5
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 1.5e-13 82.0 106 49.1
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 2.1e-10 71.6 91 46.2
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 2.1e-10 71.6 91 46.2
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 8.7e-09 66.2 162 32.7
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 3.3e-08 64.3 68 47.1
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.8e-07 61.2 94 40.4


User provided reference genes

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