Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CANSAT35G0048 Cannabis sativa HOM05D006207 ORTHO05D007868 6.3e-177 624.0 317 100.0
CsaV3_4G026760 Cucumis sativus L. HOM05D006207 ORTHO05D007868 2.1e-108 396.4 325 63.1
Sed0003544 Sechium edule HOM05D006207 ORTHO05D007868 2.8e-108 396.0 320 64.1
MELO3C026025.2 Cucumis melo HOM05D006207 ORTHO05D007868 2.0e-106 389.8 323 62.5
ClCG04G006690 Citrullus lanatus HOM05D006207 ORTHO05D007868 4.9e-105 385.2 322 61.5
Manes.09G111300 Manihot esculenta HOM05D006207 ORTHO05D007868 7.1e-104 381.3 312 63.5
TAR623G0507 Trochodendron aralioides HOM05D006207 ORTHO05D007868 1.3e-102 377.1 313 62.3
Prupe.6G284500 Prunus persica HOM05D006207 ORTHO05D007868 2.5e-101 372.9 322 61.2
TAR633G0541 Trochodendron aralioides HOM05D006207 ORTHO05D007868 8.9e-99 364.4 311 60.8
Sed0019485 Sechium edule HOM05D006207 ORTHO05D007868 2.6e-98 362.8 327 59.9
GSVIVG01030275001 Vitis vinifera HOM05D006207 ORTHO05D002478 5.8e-98 361.7 312 60.3
Cpa.g.sc5.234 Carica papaya HOM05D006207 ORTHO05D007868 4.9e-97 358.6 315 61.0
THA.LOC104823306 Tarenaya hassleriana HOM05D006207 ORTHO05D007868 8.4e-97 357.8 316 59.2
CSS0029336 Camellia sinensis var. sinensis HOM05D006207 ORTHO05D007868 3.0e-94 349.4 321 58.3
Nn2g11009 Nelumbo nucifera HOM05D006207 ORTHO05D007868 3.9e-94 349.0 299 61.2
Actinidia29070 Actinidia chinensis HOM05D006207 ORTHO05D007868 6.6e-94 348.2 317 58.0
Lj3g0024527 Lotus japonicus HOM05D006207 ORTHO05D007868 1.5e-93 347.1 320 60.3
RcHm_v2.0_Chr3g0461671 Rosa chinensis HOM05D006207 ORTHO05D007868 1.5e-93 347.1 313 59.4
Actinidia11552 Actinidia chinensis HOM05D006207 ORTHO05D007868 6.2e-92 341.7 316 57.6
AT3G08780 Arabidopsis thaliana HOM05D006207 ORTHO05D007868 8.1e-92 341.3 312 58.3
Dinv35401 Davidia involucrata HOM05D006207 ORTHO05D007868 8.1e-92 341.3 321 55.5
Thecc.05G007100 Theobroma cacao HOM05D006207 ORTHO05D007868 8.1e-92 341.3 318 56.6
AL3G19780 Arabidopsis lyrata HOM05D006207 ORTHO05D007868 3.1e-91 339.3 311 58.2
Duzib093G0843 Durio zibethinus HOM05D006207 ORTHO05D007868 4.0e-91 339.0 318 57.5
Aa31LG5G18780 Aethionema arabicum HOM05D006207 ORTHO05D007868 6.9e-91 338.2 299 59.9
Carub.0003s0791 Capsella rubella HOM05D006207 ORTHO05D007868 2.6e-90 336.3 312 57.7
Ciclev10012309m.g Citrus clementina HOM05D006207 ORTHO05D007868 2.6e-90 336.3 317 56.8
CiPaw.09G215000 Carya illinoinensis HOM05D006207 ORTHO05D007868 5.8e-90 335.1 320 56.6
Gohir.A01G229800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 1.3e-89 334.0 318 57.9
Sp3g07200 Schrenkiella parvula HOM05D006207 ORTHO05D007868 3.8e-89 332.4 313 56.5
Aqoxy1G01290 Aquilegia oxysepala HOM05D006207 ORTHO05D007868 4.9e-89 332.0 334 56.9
Thhalv10021171m.g Eutrema salsugineum HOM05D006207 ORTHO05D007868 4.9e-89 332.0 312 57.1
Gohir.D01G219700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 8.4e-89 331.3 318 56.9
CARHR083100 Cardamine hirsuta HOM05D006207 ORTHO05D007868 1.4e-88 330.5 311 57.6
Gorai.002G266400 Gossypium raimondii HOM05D006207 ORTHO05D007868 2.4e-88 329.7 318 56.6
FAN05G3975 Fragaria x ananassa HOM05D006207 ORTHO05D007868 2.7e-87 326.2 313 56.5
arahy.Tifrunner.gnm1.ann1.S95MPE Arachis hypogaea HOM05D006207 ORTHO05D007868 7.9e-87 324.7 332 56.9
FAN05G5543 Fragaria x ananassa HOM05D006207 ORTHO05D007868 7.9e-87 324.7 313 56.2
Lalb_Chr12g0207271 Lupinus albus HOM05D006207 ORTHO05D007868 1.3e-86 323.9 322 55.9
Dinv12164 Davidia involucrata HOM05D006207 ORTHO05D007868 3.0e-86 322.8 327 54.7
vmacro08907 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 5.1e-86 322.0 314 54.1
Psat7g249160 Pisum sativum HOM05D006207 ORTHO05D007868 8.7e-86 321.2 331 55.0
arahy.Tifrunner.gnm1.ann1.WBCD4G Arachis hypogaea HOM05D006207 ORTHO05D007868 3.3e-85 319.3 333 55.6
COL.COLO4_14454 Corchorus olitorius HOM05D006207 ORTHO05D007868 1.3e-84 317.4 320 55.9
Gohir.A09G167800 Gossypium hirsutum HOM05D006207 ORTHO05D007868 6.2e-84 315.1 318 54.4
C05p59060 Brassica napus HOM05D006207 ORTHO05D007868 1.8e-83 313.5 316 54.7
FvH4_6g10650 Fragaria vesca HOM05D006207 ORTHO05D007868 1.8e-83 313.5 313 55.3
FAN14G5611 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.8e-83 313.5 313 55.3
Gorai.006G185200 Gossypium raimondii HOM05D006207 ORTHO05D007868 1.8e-83 313.5 318 53.8
Duzib106G1231 Durio zibethinus HOM05D006207 ORTHO05D007868 2.4e-83 313.2 300 56.7
Glyma.01G125600 Glycine max HOM05D006207 ORTHO05D007868 6.9e-83 311.6 322 55.6
BolC5t34558H Brassica oleracea HOM05D006207 ORTHO05D007868 4.5e-82 308.9 315 54.9
PGR031G0899 Punica granatum HOM05D006207 ORTHO05D007868 4.5e-82 308.9 314 55.4
Sabra16G0120700 Salix brachista HOM05D006207 ORTHO05D007868 7.6e-82 308.1 320 54.7
Phvul.010G064400 Phaseolus vulgaris HOM05D006207 ORTHO05D007868 9.9e-82 307.8 327 54.1
Atru.chr8.2331 Acer truncatum HOM05D006207 ORTHO05D007868 1.7e-81 307.0 329 53.8
FAN09G2678 Fragaria x ananassa HOM05D006207 ORTHO05D007868 1.7e-81 307.0 313 54.3
QL07p033964 Quercus lobata HOM05D006207 ORTHO05D007868 2.2e-81 306.6 327 52.0
A05p40020 Brassica napus HOM05D006207 ORTHO05D007868 6.4e-81 305.1 315 55.2
Gohir.D09G163700 Gossypium hirsutum HOM05D006207 ORTHO05D007868 6.4e-81 305.1 318 53.5
Glyma.U032705 Glycine max HOM05D006207 ORTHO05D007868 1.9e-80 303.5 326 53.1
BraA05t22911Z Brassica rapa HOM05D006207 ORTHO05D007868 2.4e-80 303.1 316 54.7
Potri.016G126200 Populus trichocarpa HOM05D006207 ORTHO05D007868 4.2e-80 302.4 320 53.8
Lsat_1_v5_gn_8_103441 Lactuca sativa HOM05D006207 ORTHO05D007868 1.0e-78 297.7 314 51.9
TWI53G1221 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 1.3e-76 290.8 309 51.1
VMungo0331G1865 Vigna mungo HOM05D006207 ORTHO05D007868 2.8e-76 289.7 318 52.2
TWI74G1498 Tripterygium wilfordii HOM05D006207 ORTHO05D007868 2.4e-75 286.6 309 51.5
TPR.G5270 Trifolium pratense HOM05D006207 ORTHO05D007868 3.4e-74 282.7 329 50.8
Cc06_g00770 Coffea canephora HOM05D006207 ORTHO05D002478 1.9e-72 276.9 313 48.9
vmacro20324 Vaccinium macrocarpon HOM05D006207 ORTHO05D007868 4.2e-72 275.8 305 49.8
EL10Ac5g12487 Beta vulgaris HOM05D006207 ORTHO05D007868 1.3e-70 270.8 316 50.9
PSO765G0078 Papaver somniferum HOM05D006207 ORTHO05D007868 6.7e-70 268.5 318 48.4
CDE07G0940 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 1.5e-69 267.3 310 49.4
Rhsim04G0125000 Rhododendron simsii HOM05D006207 ORTHO05D007868 2.5e-69 266.5 314 47.5
Sc01g0005970 Simmondsia chinensis HOM05D006207 ORTHO05D007868 4.3e-69 265.8 318 48.1
PGSC0003DMG400017108 Solanum tuberosum HOM05D006207 ORTHO05D007868 2.1e-68 263.5 321 48.0
Cfa017117 Carpinus fangiana HOM05D006207 ORTHO05D007868 2.8e-68 263.1 300 52.7
Sopen09g008460 Solanum pennellii HOM05D006207 ORTHO05D007868 1.8e-67 260.4 321 47.7
SHI12871 Sapria himalayana HOM05D006207 ORTHO05D007868 5.3e-67 258.8 305 50.2
Medtr4g014250 Medicago truncatula HOM05D006207 ORTHO05D007868 6.9e-67 258.5 316 50.0
CAN.G967.4 Capsicum annuum HOM05D006207 ORTHO05D007868 1.5e-66 257.3 317 46.1
HanXRQChr16g0510291 Helianthus annuus HOM05D006207 ORTHO05D007868 5.9e-66 255.4 305 47.9
Nitab4.5_0000230g0180 Nicotiana tabacum HOM05D006207 ORTHO05D007868 2.2e-65 253.4 305 48.5
DCAR_023998 Daucus carota HOM05D006207 ORTHO05D007868 8.5e-65 251.5 315 46.7
Nitab4.5_0015157g0010 Nicotiana tabacum HOM05D006207 ORTHO05D007868 7.2e-64 248.4 306 47.7
Oeu057638.1 Olea europaea HOM05D006207 ORTHO05D007868 2.1e-63 246.9 311 44.7
BcaC05g29617 Brassica carinata HOM05D006207 ORTHO05D007868 1.8e-62 243.8 272 51.5
Oeu038722.1 Olea europaea HOM05D006207 ORTHO05D007868 7.4e-61 238.4 314 44.9
Peaxi162Scf00744g00339 Petunia axillaris HOM05D006207 ORTHO05D007868 7.4e-61 238.4 330 41.5
MSTRG.5544 Avicennia marina HOM05D006207 ORTHO05D007868 8.2e-60 235.0 311 42.8
Migut.J00099 Erythranthe guttata HOM05D006207 ORTHO05D007868 1.5e-58 230.7 311 45.3
MBI03_g07303_MAGBIO Magnolia biondii HOM05D006207 ORTHO05D007868 2.6e-58 229.9 306 46.4
ECA236G5132 Erigeron canadensis HOM05D006207 ORTHO05D007868 1.7e-57 227.3 316 44.6
HPP92_019707 Vanilla planifolia HOM05D006207 ORTHO05D007868 3.8e-57 226.1 318 44.3
Ah.12g059050 Amaranthus hybridus HOM05D006207 ORTHO05D007868 1.1e-56 224.6 304 45.7
CDE06G0694 Ceratophyllum demersum HOM05D006207 ORTHO05D007868 9.4e-56 221.5 312 44.6
Lj2C67T4 Lonicera japonica HOM05D006207 ORTHO05D007868 2.0e-53 213.8 197 54.3
SEGI_14997 Sequoiadendron giganteum HOM05D006207 ORTHO05D007868 1.5e-50 204.1 390 35.6
unitig_27.g24873 Utricularia gibba HOM05D006207 ORTHO05D007868 5.5e-48 195.7 310 40.0
ATR0594G098 Amborella trichopoda HOM05D006207 ORTHO05D007868 2.7e-47 193.4 301 40.9
AUR62030762 Chenopodium quinoa HOM05D006207 ORTHO05D007868 9.1e-43 178.3 299 40.8
Lj3P946T49 Lonicera japonica HOM05D006207 ORTHO05D007868 2.6e-42 176.8 180 50.6
Pp3c3_16910 Physcomitrium patens HOM05D006207 ORTHO05D007868 1.3e-41 174.5 345 35.9
Rhsim05G0225500 Rhododendron simsii HOM05D006207 ORTHO05D007868 1.3e-41 174.5 180 50.0
Solyc09g015180.4 Solanum lycopersicum HOM05D006207 ORTHO05D007868 1.3e-41 174.5 247 42.9
MD04G1166200 Malus domestica HOM05D006207 ORTHO05D007868 5.3e-35 152.5 166 50.6
Duzib128G0456 Durio zibethinus HOM05D006207 ORTHO05D007868 1.7e-33 147.5 180 47.2
AUR62030533 Chenopodium quinoa HOM05D006207 ORTHO05D007868 4.0e-30 136.3 135 53.3
AagrBONN_evm.TU.Sc2ySwM_368.1939 Anthoceros agrestis HOM05D006207 ORTHO05D007868 1.7e-28 131.0 392 27.0
Os07g0540200 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.1e-27 128.3 309 33.3
Zm00001eb163300 Zea mays HOM05D006207 ORTHO05D007868 1.4e-27 127.9 310 32.6
Ca_20352_v3 Cicer arietinum L. HOM05D006207 ORTHO05D007868 1.9e-24 117.5 97 66.0
CBR_g48858 Chara braunii HOM05D006207 ORTHO05D007868 4.7e-23 112.8 350 29.1
Os04g0479300 Oryza sativa ssp. japonica HOM05D006207 ORTHO05D007868 1.8e-19 100.9 303 30.0
MD04G1166100 Malus domestica HOM05D006207 ORTHO05D007868 1.2e-18 98.2 73 67.1
Zm00001eb421620 Zea mays HOM05D006207 ORTHO05D007868 2.5e-16 90.5 196 33.7
SalBow6G1507 Salvia bowleyana HOM05D000800 ORTHO05D000658 1.6e-15 87.8 96 47.9
VMungo1215G0839 Vigna mungo HOM05D006207 ORTHO05D007868 1.7e-12 77.8 77 49.4
Mapoly0060s0108 Marchantia polymorpha HOM05D006207 ORTHO05D007868 1.4e-11 74.7 122 38.5
Cc08_g04640 Coffea canephora HOM05D006207 ORTHO05D007868 7.3e-08 62.4 78 47.4
SalBow2G0248 Salvia bowleyana HOM05D007863 ORTHO05D009265 9.5e-08 62.0 79 43.0
VMungo1309G1345 Vigna mungo HOM05D006207 ORTHO05D007868 4.7e-07 59.7 67 49.3
VMungo0647G0753 Vigna mungo HOM05D006207 ORTHO05D007868 6.2e-07 59.3 117 35.9
SalBow8G1578 Salvia bowleyana HOM05D006207 ORTHO05D007868 3.1e-06 57.0 79 45.6


User provided reference genes

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